Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002219

Physical Location & Seq

Genomic Coordinates Forward (+)

67309190 .. 67315189

Gene Structure 6000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG433900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCGGCTATGGAGAATGACTTTCAGGATCGCCGGAATTTGAAGCTAGTTCACGATAACGTTCACGGCATCGTCTACCTCGAACCGCTCTCCTTGAATTTTATTGACACTGAACAGTTTCAGAGGCTTCGTGATCTGAAGCAACTTGGTCTGACCAGCATGGTTTACCCTGGAGCTGTACATTCTAGATTTGAGCATTCACTTGGGGTATATTGGCTTGCTGGTGAAGCTATCAATAAAATCAAAACTTACCAAGGCGAGGAGCTTGGAATTGACAGCTTTGATGTGAGAACAGTAAAACTTGCTGGACTACTGCATGATATTGGCCATGGGCCTTTCAGCCACATGTTTGAGAGCGCGTTTCTTCCTCGGGTTCATTCTGGTGACAAATGGTCCCATGAGGATATGTCTGTGAAGATGATTGACTACATTGTCGACGAGCACCACATTGACATTGATTCTGAAGAGCTAAAGAGAGTGAAAGACCTGATCCTGGCTAGCTCTAAACATGTGGCACAGAATGCTGCACCAGAAAAGCGGTTCTTGTATGATATTGTTGCTAATGGACGCACTGGAATAGATGTTGACAAGTTTGATTACATTGAACGTGACTCCCGTGCCTGTGGCATAGGCTGTAATTTTCACTTTGAGAGGCTGATGGAAACCATGCGAGTTATGGAGGATGAGATATGTTACCGTGCTAGTGAATATCTGACAATCAACAAGCTGTTTATGACTCGGGCTAATCTGCATCGGACTGTCTATACGCATGCAAAAGTGAAGGCTATTGAACTCATGGCCGTTGATGTTCTGTGCAAAGCAAATGCTGAACTTGGGATTGCAGACTCCATTCACAAACCATCTGAATTCTGGAAGTTAGATGATTCAATTCTGAAAAAAATTGAAACGTCTGACAACCCTGAGCTGAAGGAGGCAAAGGATTTAATCTTACGCATTCGAAGAAGGGATCTCTACCAGTTCTGCAATGAGTTAACTGTTCCAAAGGACAGACTACATAACTTCAACGATATTACAGCCAAAGATATAATTTGTTCTCAGAAAGCTGGCAATGTTACGCTACAGGAGGAAGATGTGGTTGTGATCACTGTTAAAATTGATTGGACTAATGACAGGAACAGCCCTCTTGAAAGGTACCTGAAATTAAATCAAATAATGCTTATTATTAAGCCACTGTTAACTTTGAATTTGCATATAGTGATTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer4_14 HD Radical_SAM

Protein Analysis

409

Amino Acids

47.23

Weight (kDa)

5.85

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD	PF01966	63 - 154	4.3e-11	HD domain
HD_assoc_2	PF19276	216 - 326	2.1e-06	HD associated region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40270 AT5G40270 AT5G40290
fragaria_vesca	FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610
malus_domestica	MD09G1034800.v1.1 MD16G1092000.v1.1
prunus_persica	Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1
pyrus_communis	pycom111g02770 pycom16g07850
rosa_chinensis	RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921
rosa_laevigata	RLG00000005877 RLG00000022010
rosa_multiflora	Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080690 Rroxscaffold_5G00384470
rosa_rugosa	Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200
rosa_samantha	Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900
rosa_wichuraiana	Rw2G052030 Rw4G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
Acc65I	GGTACC	1 cut(s)	1152
AccB1I	GGYRCC	1 cut(s)	1152
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	2 cut(s)	75, 435
AccII	CGCG	1 cut(s)	359
AciI	CCGC	3 cut(s)	5, 86, 538
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	3 cut(s)	36, 484, 975
AcoI	YGGCCR	2 cut(s)	325, 798
AcsI	RAATTY	5 cut(s)	37, 97, 866, 1204, 1224
AcuI	CTGAAG	3 cut(s)	158, 483, 947
AfaI	GTAC	2 cut(s)	180, 1154
AfiI	CCNNNNNNNGG	2 cut(s)	259, 493
AflIII	ACRYGT	2 cut(s)	345, 508
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	169, 492
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	36, 484, 975
Ama87I	CYCGRG	2 cut(s)	369, 738
AoxI	GGCC	3 cut(s)	325, 332, 798
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	5 cut(s)	37, 97, 866, 1204, 1224
Asp700I	GAANNNNTTC	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	1152
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	332, 393
AsuHPI	GGTGA	2 cut(s)	236, 395
AsuII	TTCGAA	1 cut(s)	958
AsuNHI	GCTAGC	1 cut(s)	497
AvaI	CYCGRG	2 cut(s)	369, 738
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	1152
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	652, 868
BceAI	ACGGC	2 cut(s)	82, 785
BciT130I	CCWGG	2 cut(s)	171, 494
BclI	TGATCA	1 cut(s)	1101
BfaI	CTAG	4 cut(s)	47, 186, 498, 702
BfmI	CTRYAG	1 cut(s)	1079
BisI	GCNGC	2 cut(s)	6, 525
BlsI	GCNGC	2 cut(s)	7, 526
Bme1390I	CCNGG	2 cut(s)	171, 494
Bme18I	GGWCC	1 cut(s)	393
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	369, 738
BmgT120I	GGNCC	2 cut(s)	332, 393
BmiI	GGNNCC	2 cut(s)	395, 1154
BmrFI	CCNGG	2 cut(s)	171, 494
BmsI	GCATC	2 cut(s)	78, 760
BmtI	GCTAGC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	921
Bpu14I	TTCGAA	1 cut(s)	958
BsaJI	CCNNGG	4 cut(s)	169, 253, 328, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 493
Bse1I	ACTGG	2 cut(s)	577, 976
Bse3DI	GCAATG	2 cut(s)	991, 1075
BseBI	CCWGG	2 cut(s)	171, 494
BseDI	CCNNGG	4 cut(s)	169, 253, 328, 368
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	259, 493
BseMI	GCAATG	2 cut(s)	991, 1075
BseMII	CTCAG	2 cut(s)	912, 1070
BseNI	ACTGG	2 cut(s)	577, 976
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	3 cut(s)	327, 334, 800
BshNI	GGYRCC	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	2 cut(s)	369, 738
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	259, 493
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	3 cut(s)	196, 526, 954
BsnI	GGCC	3 cut(s)	327, 334, 800
BsoBI	CYCGRG	2 cut(s)	369, 738
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	28, 133, 489, 967, 1101
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	3 cut(s)	5, 86, 538
BspANI	GGCC	3 cut(s)	327, 334, 800
BspCNI	CTCAG	2 cut(s)	913, 1069
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	2 cut(s)	395, 1154
BspOI	GCTAGC	1 cut(s)	501
BspPI	GGATC	3 cut(s)	36, 484, 975
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	1152
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	991, 1075
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	577, 976
BssECI	CCNNGG	4 cut(s)	169, 253, 328, 368
BssMI	GATC	5 cut(s)	28, 133, 489, 967, 1101
BssT1I	CCWWGG	2 cut(s)	253, 328
Bst2UI	CCWGG	2 cut(s)	171, 494
Bst4CI	ACNGT	7 cut(s)	117, 295, 698, 760, 997, 1108, 1194
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	958
BstC8I	GCNNGC	4 cut(s)	219, 499, 771, 1066
BstDEI	CTNAG	2 cut(s)	921, 1056
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	5 cut(s)	31, 136, 492, 970, 1104
BstMBI	GATC	5 cut(s)	28, 133, 489, 967, 1101
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 521
BstNI	CCWGG	2 cut(s)	171, 494
BstNSI	RCATGY	3 cut(s)	349, 512, 773
BstSCI	CCNGG	2 cut(s)	169, 492
BstSFI	CTRYAG	1 cut(s)	1079
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	327, 334, 800
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	4 cut(s)	108, 570, 1104, 1190
Cac8I	GCNNGC	4 cut(s)	219, 499, 771, 1066
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	332, 393
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	179, 1153
CviAII	CATG	9 cut(s)	160, 317, 329, 346, 398, 509, 667, 770, 796
CviQI	GTAC	2 cut(s)	179, 1153
DdeI	CTNAG	2 cut(s)	921, 1056
DpnI	GATC	5 cut(s)	30, 135, 491, 969, 1103
DpnII	GATC	5 cut(s)	28, 133, 489, 967, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	431
DriI	GACNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	2 cut(s)	325, 798
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	253, 328
Eco47I	GGWCC	1 cut(s)	393
Eco57I	CTGAAG	3 cut(s)	158, 483, 947
Eco88I	CYCGRG	2 cut(s)	369, 738
EcoRI	GAATTC	1 cut(s)	866
EcoRII	CCWGG	2 cut(s)	169, 492
EcoT14I	CCWWGG	2 cut(s)	253, 328
ErhI	CCWWGG	2 cut(s)	253, 328
FaeI	CATG	9 cut(s)	163, 320, 332, 349, 401, 512, 670, 773, 799
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	9 cut(s)	159, 316, 328, 345, 397, 508, 666, 769, 795
FbaI	TGATCA	1 cut(s)	1101
FblI	GTMKAC	2 cut(s)	75, 435
Fnu4HI	GCNGC	2 cut(s)	6, 525
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	2 cut(s)	6, 525
FspBI	CTAG	4 cut(s)	47, 186, 498, 702
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	6, 525
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	327, 334, 800
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	576
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	9 cut(s)	163, 320, 332, 349, 401, 512, 670, 773, 799
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	4 cut(s)	436, 586, 993, 1197
HindII	GTYRAC	4 cut(s)	436, 586, 993, 1197
HinfI	GANTC	5 cut(s)	458, 611, 736, 845, 884
HpaI	GTTAAC	2 cut(s)	993, 1197
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	236, 395
Hpy166II	GTNNAC	8 cut(s)	52, 64, 76, 166, 436, 586, 993, 1197
Hpy188III	TCNNGA	6 cut(s)	26, 53, 131, 186, 871, 1145
Hpy8I	GTNNAC	8 cut(s)	52, 64, 76, 166, 436, 586, 993, 1197
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	775, 922, 957
HpyCH4III	ACNGT	7 cut(s)	117, 295, 698, 760, 997, 1108, 1194
HpyCH4IV	ACGT	3 cut(s)	60, 607, 908
HpyCH4V	TGCA	8 cut(s)	316, 527, 751, 773, 816, 842, 984, 1210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 521
HpyF3I	CTNAG	2 cut(s)	921, 1056
HpySE526I	ACGT	3 cut(s)	60, 607, 908
Hsp92II	CATG	9 cut(s)	163, 320, 332, 349, 401, 512, 670, 773, 799
HspAI	GCGC	1 cut(s)	357
KpnI	GGTACC	1 cut(s)	1156
Ksp22I	TGATCA	1 cut(s)	1101
KspAI	GTTAAC	2 cut(s)	993, 1197
Kzo9I	GATC	5 cut(s)	28, 133, 489, 967, 1101
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	173, 262
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	2 cut(s)	78, 760
MaeI	CTAG	4 cut(s)	47, 186, 498, 702
MaeII	ACGT	3 cut(s)	60, 607, 908
MaeIII	GTNAC	4 cut(s)	383, 608, 692, 1072
MalI	GATC	5 cut(s)	30, 135, 491, 969, 1103
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	5 cut(s)	28, 133, 489, 967, 1101
MboII	GAAGA	5 cut(s)	356, 427, 476, 972, 1100
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	327
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	3 cut(s)	605, 730, 839
Mox20I	TGGCCA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	6 cut(s)	944, 992, 1110, 1163, 1185, 1196
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	327
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	171, 494
Mva1269I	GAATGC	3 cut(s)	196, 526, 954
MvaI	CCWGG	2 cut(s)	171, 494
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	227, 521
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	5 cut(s)	28, 133, 489, 967, 1101
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	9 cut(s)	163, 320, 332, 349, 401, 512, 670, 773, 799
NlaIV	GGNNCC	2 cut(s)	395, 1154
NmuCI	GTSAC	2 cut(s)	383, 608
NspI	RCATGY	3 cut(s)	349, 512, 773
NspV	TTCGAA	1 cut(s)	958
PaeI	GCATGC	1 cut(s)	773
PciI	ACATGT	2 cut(s)	345, 508
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 613
PctI	GAATGC	3 cut(s)	196, 526, 954
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	458, 884
PkrI	GCNGC	2 cut(s)	7, 526
PleI	GAGTC	3 cut(s)	605, 730, 839
PpsI	GAGTC	3 cut(s)	605, 730, 839
PscI	ACATGT	2 cut(s)	345, 508
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	169, 492
PspGI	CCWGG	2 cut(s)	169, 492
PspN4I	GGNNCC	2 cut(s)	395, 1154
PspPI	GGNCC	2 cut(s)	332, 393
PsuI	RGATCY	1 cut(s)	967
RsaI	GTAC	2 cut(s)	180, 1154
RsaNI	GTAC	2 cut(s)	179, 1153
RseI	CAYNNNNRTG	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	944, 992, 1110, 1163, 1185, 1196
SatI	GCNGC	2 cut(s)	6, 525
Sau3AI	GATC	5 cut(s)	28, 133, 489, 967, 1101
Sau96I	GGNCC	2 cut(s)	332, 393
SchI	GAGTC	3 cut(s)	605, 730, 839
ScrFI	CCNGG	2 cut(s)	171, 494
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	78, 760
SfcI	CTRYAG	1 cut(s)	1079
SfuI	TTCGAA	1 cut(s)	958
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	381
SphI	GCATGC	1 cut(s)	773
SsiI	CCGC	3 cut(s)	5, 86, 538
SspMI	CTAG	4 cut(s)	47, 186, 498, 702
StyD4I	CCNGG	2 cut(s)	169, 492
StyI	CCWWGG	2 cut(s)	253, 328
TaaI	ACNGT	7 cut(s)	117, 295, 698, 760, 997, 1108, 1194
TaiI	ACGT	3 cut(s)	63, 610, 911
TaqI	TCGA	3 cut(s)	81, 435, 958
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	458, 884
Tru1I	TTAA	6 cut(s)	944, 992, 1110, 1163, 1185, 1196
Tru9I	TTAA	6 cut(s)	944, 992, 1110, 1163, 1185, 1196
TscAI	CASTG	4 cut(s)	115, 577, 1111, 1197
TseFI	GTSAC	2 cut(s)	383, 608
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	2 cut(s)	383, 608
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	4 cut(s)	115, 577, 1111, 1197
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	5 cut(s)	37, 97, 866, 1204, 1224
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	3 cut(s)	349, 512, 773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	673, 867
XmiI	GTMKAC	2 cut(s)	75, 435
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	4 cut(s)	47, 186, 498, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.