4Fe-4S single cluster domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40270 AT5G40270 AT5G40290 |
| fragaria_vesca | FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610 |
| malus_domestica | MD09G1034800.v1.1 MD16G1092000.v1.1 |
| prunus_persica | Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 |
| pyrus_communis | pycom111g02770 pycom16g07850 |
| rosa_chinensis | RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921 |
| rosa_laevigata | RLG00000005877 RLG00000022010 |
| rosa_multiflora | Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00080690 Rroxscaffold_5G00384470 |
| rosa_rugosa | Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200 |
| rosa_samantha | Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900 |
| rosa_wichuraiana | Rw2G052030 Rw4G035110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 431, 1247 |
| AccBSI | CCGCTC | 1 cut(s) | 88 |
| AccI | GTMKAC | 3 cut(s) | 75, 435, 1257 |
| AccII | CGCG | 1 cut(s) | 359 |
| AccIII | TCCGGA | 1 cut(s) | 1354 |
| AciI | CCGC | 3 cut(s) | 5, 86, 538 |
| AclI | AACGTT | 1 cut(s) | 60 |
| AclWI | GGATC | 3 cut(s) | 36, 484, 975 |
| AcoI | YGGCCR | 2 cut(s) | 325, 798 |
| AcsI | RAATTY | 4 cut(s) | 37, 97, 866, 1187 |
| AcuI | CTGAAG | 4 cut(s) | 158, 483, 947, 1337 |
| AfaI | GTAC | 4 cut(s) | 180, 1180, 1338, 1344 |
| AfeI | AGCGCT | 1 cut(s) | 1392 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 259, 493 |
| AflIII | ACRYGT | 2 cut(s) | 345, 508 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 391 |
| AjnI | CCWGG | 3 cut(s) | 169, 492, 1275 |
| Alw21I | GWGCWC | 1 cut(s) | 444 |
| AlwI | GGATC | 3 cut(s) | 36, 484, 975 |
| Ama87I | CYCGRG | 2 cut(s) | 369, 738 |
| Aor13HI | TCCGGA | 1 cut(s) | 1354 |
| Aor51HI | AGCGCT | 1 cut(s) | 1392 |
| AoxI | GGCC | 3 cut(s) | 325, 332, 798 |
| ApeKI | GCWGC | 3 cut(s) | 524, 1283, 1393 |
| ApoI | RAATTY | 4 cut(s) | 37, 97, 866, 1187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 117 |
| AspLEI | GCGC | 2 cut(s) | 359, 1393 |
| AspS9I | GGNCC | 2 cut(s) | 332, 393 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 395 |
| AsuII | TTCGAA | 1 cut(s) | 958 |
| AsuNHI | GCTAGC | 1 cut(s) | 497 |
| AvaI | CYCGRG | 2 cut(s) | 369, 738 |
| AvaII | GGWCC | 1 cut(s) | 393 |
| BalI | TGGCCA | 1 cut(s) | 327 |
| BbsI | GAAGAC | 1 cut(s) | 1325 |
| Bbv12I | GWGCWC | 1 cut(s) | 444 |
| BbvI | GCAGC | 3 cut(s) | 511, 1295, 1380 |
| BccI | CCATC | 2 cut(s) | 652, 868 |
| BceAI | ACGGC | 2 cut(s) | 82, 785 |
| BciT130I | CCWGG | 3 cut(s) | 171, 494, 1277 |
| BclI | TGATCA | 1 cut(s) | 1101 |
| BfaI | CTAG | 4 cut(s) | 47, 186, 498, 702 |
| BfmI | CTRYAG | 2 cut(s) | 1079, 1394 |
| BfoI | RGCGCY | 1 cut(s) | 1394 |
| BisI | GCNGC | 4 cut(s) | 6, 525, 1284, 1394 |
| BlpI | GCTNAGC | 1 cut(s) | 1387 |
| BlsI | GCNGC | 4 cut(s) | 7, 526, 1285, 1395 |
| BmcAI | AGTACT | 1 cut(s) | 1180 |
| Bme1390I | CCNGG | 3 cut(s) | 171, 494, 1277 |
| Bme18I | GGWCC | 1 cut(s) | 393 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 391 |
| BmeT110I | CYCGRG | 2 cut(s) | 369, 738 |
| BmgT120I | GGNCC | 2 cut(s) | 332, 393 |
| BmiI | GGNNCC | 1 cut(s) | 395 |
| BmrFI | CCNGG | 3 cut(s) | 171, 494, 1277 |
| BmsI | GCATC | 3 cut(s) | 78, 760, 1285 |
| BmtI | GCTAGC | 1 cut(s) | 501 |
| BpiI | GAAGAC | 1 cut(s) | 1325 |
| BpmI | CTGGAG | 1 cut(s) | 192 |
| Bpu10I | CCTNAGC | 1 cut(s) | 921 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1387 |
| Bpu14I | TTCGAA | 1 cut(s) | 958 |
| BsaJI | CCNNGG | 4 cut(s) | 169, 253, 328, 368 |
| BsaWI | WCCGGW | 1 cut(s) | 1354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 259, 493 |
| Bse1I | ACTGG | 2 cut(s) | 577, 976 |
| Bse3DI | GCAATG | 2 cut(s) | 991, 1075 |
| BseAI | TCCGGA | 1 cut(s) | 1354 |
| BseBI | CCWGG | 3 cut(s) | 171, 494, 1277 |
| BseDI | CCNNGG | 4 cut(s) | 169, 253, 328, 368 |
| BseGI | GGATG | 1 cut(s) | 688 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 259, 493 |
| BseMI | GCAATG | 2 cut(s) | 991, 1075 |
| BseMII | CTCAG | 2 cut(s) | 912, 1070 |
| BseNI | ACTGG | 2 cut(s) | 577, 976 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseXI | GCAGC | 3 cut(s) | 511, 1295, 1380 |
| BsgI | GTGCAG | 2 cut(s) | 510, 1362 |
| Bsh1236I | CGCG | 1 cut(s) | 359 |
| BshFI | GGCC | 3 cut(s) | 327, 334, 800 |
| BsiHKAI | GWGCWC | 1 cut(s) | 444 |
| BsiHKCI | CYCGRG | 2 cut(s) | 369, 738 |
| BsiSI | CCGG | 2 cut(s) | 34, 1355 |
| BslFI | GGGAC | 1 cut(s) | 379 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 259, 493 |
| BsmFI | GGGAC | 1 cut(s) | 379 |
| BsmI | GAATGC | 3 cut(s) | 196, 526, 954 |
| BsnI | GGCC | 3 cut(s) | 327, 334, 800 |
| BsoBI | CYCGRG | 2 cut(s) | 369, 738 |
| Bsp119I | TTCGAA | 1 cut(s) | 958 |
| Bsp1286I | GDGCHC | 1 cut(s) | 444 |
| Bsp13I | TCCGGA | 1 cut(s) | 1354 |
| Bsp1407I | TGTACA | 1 cut(s) | 178 |
| Bsp143I | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1387 |
| Bsp19I | CCATGG | 1 cut(s) | 328 |
| BspACI | CCGC | 3 cut(s) | 5, 86, 538 |
| BspANI | GGCC | 3 cut(s) | 327, 334, 800 |
| BspCNI | CTCAG | 2 cut(s) | 913, 1069 |
| BspEI | TCCGGA | 1 cut(s) | 1354 |
| BspFNI | CGCG | 1 cut(s) | 359 |
| BspLI | GGNNCC | 1 cut(s) | 395 |
| BspMAI | CTGCAG | 1 cut(s) | 1398 |
| BspOI | GCTAGC | 1 cut(s) | 501 |
| BspPI | GGATC | 3 cut(s) | 36, 484, 975 |
| BspQI | GCTCTTC | 1 cut(s) | 459 |
| BspT104I | TTCGAA | 1 cut(s) | 958 |
| BsrBI | CCGCTC | 1 cut(s) | 88 |
| BsrDI | GCAATG | 2 cut(s) | 991, 1075 |
| BsrGI | TGTACA | 1 cut(s) | 178 |
| BsrI | ACTGG | 2 cut(s) | 577, 976 |
| BssECI | CCNNGG | 4 cut(s) | 169, 253, 328, 368 |
| BssMI | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| BssT1I | CCWWGG | 2 cut(s) | 253, 328 |
| Bst2UI | CCWGG | 3 cut(s) | 171, 494, 1277 |
| Bst4CI | ACNGT | 6 cut(s) | 117, 295, 698, 760, 997, 1108 |
| Bst6I | CTCTTC | 1 cut(s) | 459 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 521, 1289 |
| BstAUI | TGTACA | 1 cut(s) | 178 |
| BstBI | TTCGAA | 1 cut(s) | 958 |
| BstC8I | GCNNGC | 4 cut(s) | 219, 499, 771, 1066 |
| BstDEI | CTNAG | 3 cut(s) | 921, 1056, 1387 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 1 cut(s) | 688 |
| BstFNI | CGCG | 1 cut(s) | 359 |
| BstH2I | RGCGCY | 1 cut(s) | 1394 |
| BstHHI | GCGC | 2 cut(s) | 359, 1393 |
| BstKTI | GATC | 6 cut(s) | 31, 136, 492, 970, 1104, 1207 |
| BstMBI | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 227, 521, 1289 |
| BstNI | CCWGG | 3 cut(s) | 171, 494, 1277 |
| BstNSI | RCATGY | 3 cut(s) | 349, 512, 773 |
| BstSCI | CCNGG | 3 cut(s) | 169, 492, 1275 |
| BstSFI | CTRYAG | 2 cut(s) | 1079, 1394 |
| BstUI | CGCG | 1 cut(s) | 359 |
| BstV1I | GCAGC | 3 cut(s) | 511, 1295, 1380 |
| BstV2I | GAAGAC | 1 cut(s) | 1325 |
| BstX2I | RGATCY | 1 cut(s) | 967 |
| BstYI | RGATCY | 1 cut(s) | 967 |
| BsuRI | GGCC | 3 cut(s) | 327, 334, 800 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtsCI | GGATG | 1 cut(s) | 688 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 570, 1104 |
| Cac8I | GCNNGC | 4 cut(s) | 219, 499, 771, 1066 |
| CfoI | GCGC | 2 cut(s) | 359, 1393 |
| Cfr13I | GGNCC | 2 cut(s) | 332, 393 |
| CseI | GACGC | 1 cut(s) | 576 |
| CsiI | ACCWGGT | 1 cut(s) | 1275 |
| Csp6I | GTAC | 4 cut(s) | 179, 1179, 1337, 1343 |
| CviAII | CATG | 9 cut(s) | 160, 317, 329, 346, 398, 509, 667, 770, 796 |
| CviQI | GTAC | 4 cut(s) | 179, 1179, 1337, 1343 |
| DdeI | CTNAG | 3 cut(s) | 921, 1056, 1387 |
| DpnI | GATC | 6 cut(s) | 30, 135, 491, 969, 1103, 1206 |
| DpnII | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 431, 1247 |
| DriI | GACNNNNNGTC | 1 cut(s) | 391 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 431, 1247 |
| EaeI | YGGCCR | 2 cut(s) | 325, 798 |
| Eam1104I | CTCTTC | 1 cut(s) | 459 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 391 |
| EarI | CTCTTC | 1 cut(s) | 459 |
| Eco130I | CCWWGG | 2 cut(s) | 253, 328 |
| Eco47I | GGWCC | 1 cut(s) | 393 |
| Eco47III | AGCGCT | 1 cut(s) | 1392 |
| Eco57I | CTGAAG | 4 cut(s) | 158, 483, 947, 1337 |
| Eco88I | CYCGRG | 2 cut(s) | 369, 738 |
| EcoRI | GAATTC | 1 cut(s) | 866 |
| EcoRII | CCWGG | 3 cut(s) | 169, 492, 1275 |
| EcoT14I | CCWWGG | 2 cut(s) | 253, 328 |
| ErhI | CCWWGG | 2 cut(s) | 253, 328 |
| FaeI | CATG | 9 cut(s) | 163, 320, 332, 349, 401, 512, 670, 773, 799 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 527, 559 |
| FaqI | GGGAC | 1 cut(s) | 379 |
| FatI | CATG | 9 cut(s) | 159, 316, 328, 345, 397, 508, 666, 769, 795 |
| FauNDI | CATATG | 1 cut(s) | 1324 |
| FbaI | TGATCA | 1 cut(s) | 1101 |
| FblI | GTMKAC | 3 cut(s) | 75, 435, 1257 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 525, 1284, 1394 |
| FokI | GGATG | 1 cut(s) | 695 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 525, 1284, 1394 |
| FspBI | CTAG | 4 cut(s) | 47, 186, 498, 702 |
| GlaI | GCGC | 2 cut(s) | 358, 1392 |
| GluI | GCNGC | 4 cut(s) | 6, 525, 1284, 1394 |
| GsuI | CTGGAG | 1 cut(s) | 192 |
| HaeII | RGCGCY | 1 cut(s) | 1394 |
| HaeIII | GGCC | 3 cut(s) | 327, 334, 800 |
| HapII | CCGG | 2 cut(s) | 34, 1355 |
| HgaI | GACGC | 1 cut(s) | 576 |
| HhaI | GCGC | 2 cut(s) | 359, 1393 |
| Hin1II | CATG | 9 cut(s) | 163, 320, 332, 349, 401, 512, 670, 773, 799 |
| Hin6I | GCGC | 2 cut(s) | 357, 1391 |
| HinP1I | GCGC | 2 cut(s) | 357, 1391 |
| HincII | GTYRAC | 3 cut(s) | 436, 586, 993 |
| HindII | GTYRAC | 3 cut(s) | 436, 586, 993 |
| HindIII | AAGCTT | 1 cut(s) | 1384 |
| HinfI | GANTC | 7 cut(s) | 458, 611, 736, 845, 884, 1152, 1194 |
| HpaI | GTTAAC | 1 cut(s) | 993 |
| HpaII | CCGG | 2 cut(s) | 34, 1355 |
| HphI | GGTGA | 2 cut(s) | 236, 395 |
| Hpy166II | GTNNAC | 8 cut(s) | 52, 64, 76, 166, 436, 586, 993, 1258 |
| Hpy188III | TCNNGA | 8 cut(s) | 26, 53, 131, 186, 871, 1145, 1238, 1355 |
| Hpy8I | GTNNAC | 8 cut(s) | 52, 64, 76, 166, 436, 586, 993, 1258 |
| Hpy99I | CGWCG | 1 cut(s) | 440 |
| HpyAV | CCTTC | 3 cut(s) | 775, 922, 957 |
| HpyCH4III | ACNGT | 6 cut(s) | 117, 295, 698, 760, 997, 1108 |
| HpyCH4IV | ACGT | 3 cut(s) | 60, 607, 908 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 227, 521, 1289 |
| HpyF3I | CTNAG | 3 cut(s) | 921, 1056, 1387 |
| HpySE526I | ACGT | 3 cut(s) | 60, 607, 908 |
| Hsp92II | CATG | 9 cut(s) | 163, 320, 332, 349, 401, 512, 670, 773, 799 |
| HspAI | GCGC | 2 cut(s) | 357, 1391 |
| Kpn2I | TCCGGA | 1 cut(s) | 1354 |
| Ksp22I | TGATCA | 1 cut(s) | 1101 |
| KspAI | GTTAAC | 1 cut(s) | 993 |
| Kzo9I | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| LguI | GCTCTTC | 1 cut(s) | 459 |
| LmnI | GCTCC | 2 cut(s) | 173, 262 |
| Lsp1109I | GCAGC | 3 cut(s) | 511, 1295, 1380 |
| LweI | GCATC | 3 cut(s) | 78, 760, 1285 |
| MabI | ACCWGGT | 1 cut(s) | 1275 |
| MaeI | CTAG | 4 cut(s) | 47, 186, 498, 702 |
| MaeII | ACGT | 3 cut(s) | 60, 607, 908 |
| MaeIII | GTNAC | 5 cut(s) | 383, 608, 692, 1072, 1214 |
| MalI | GATC | 6 cut(s) | 30, 135, 491, 969, 1103, 1206 |
| MbiI | CCGCTC | 1 cut(s) | 88 |
| MboI | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| MboII | GAAGA | 7 cut(s) | 356, 427, 476, 972, 1100, 1153, 1330 |
| MflI | RGATCY | 1 cut(s) | 967 |
| MhlI | GDGCHC | 1 cut(s) | 444 |
| MlsI | TGGCCA | 1 cut(s) | 327 |
| MluNI | TGGCCA | 1 cut(s) | 327 |
| MlyI | GAGTC | 4 cut(s) | 605, 730, 839, 1161 |
| Mox20I | TGGCCA | 1 cut(s) | 327 |
| MroI | TCCGGA | 1 cut(s) | 1354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 117 |
| MscI | TGGCCA | 1 cut(s) | 327 |
| MseI | TTAA | 3 cut(s) | 944, 992, 1110 |
| MslI | CAYNNNNRTG | 1 cut(s) | 381 |
| Msp20I | TGGCCA | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 1 cut(s) | 1315 |
| MspI | CCGG | 2 cut(s) | 34, 1355 |
| MspR9I | CCNGG | 3 cut(s) | 171, 494, 1277 |
| Mva1269I | GAATGC | 3 cut(s) | 196, 526, 954 |
| MvaI | CCWGG | 3 cut(s) | 171, 494, 1277 |
| MvnI | CGCG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 227, 521, 1289 |
| NcoI | CCATGG | 1 cut(s) | 328 |
| NdeI | CATATG | 1 cut(s) | 1324 |
| NdeII | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| NheI | GCTAGC | 1 cut(s) | 497 |
| NlaIII | CATG | 9 cut(s) | 163, 320, 332, 349, 401, 512, 670, 773, 799 |
| NlaIV | GGNNCC | 1 cut(s) | 395 |
| NmuCI | GTSAC | 3 cut(s) | 383, 608, 1214 |
| NspI | RCATGY | 3 cut(s) | 349, 512, 773 |
| NspV | TTCGAA | 1 cut(s) | 958 |
| PaeI | GCATGC | 1 cut(s) | 773 |
| PciI | ACATGT | 2 cut(s) | 345, 508 |
| PciSI | GCTCTTC | 1 cut(s) | 459 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 78, 613 |
| PctI | GAATGC | 3 cut(s) | 196, 526, 954 |
| PdmI | GAANNNNTTC | 1 cut(s) | 117 |
| PfeI | GAWTC | 3 cut(s) | 458, 884, 1194 |
| PkrI | GCNGC | 4 cut(s) | 7, 526, 1285, 1395 |
| PleI | GAGTC | 4 cut(s) | 605, 730, 839, 1160 |
| PpsI | GAGTC | 4 cut(s) | 605, 730, 839, 1160 |
| PscI | ACATGT | 2 cut(s) | 345, 508 |
| Psp1406I | AACGTT | 1 cut(s) | 60 |
| Psp6I | CCWGG | 3 cut(s) | 169, 492, 1275 |
| PspGI | CCWGG | 3 cut(s) | 169, 492, 1275 |
| PspN4I | GGNNCC | 1 cut(s) | 395 |
| PspPI | GGNCC | 2 cut(s) | 332, 393 |
| PstI | CTGCAG | 1 cut(s) | 1398 |
| PsuI | RGATCY | 1 cut(s) | 967 |
| PvuII | CAGCTG | 1 cut(s) | 1315 |
| RsaI | GTAC | 4 cut(s) | 180, 1180, 1338, 1344 |
| RsaNI | GTAC | 4 cut(s) | 179, 1179, 1337, 1343 |
| RseI | CAYNNNNRTG | 1 cut(s) | 381 |
| SalI | GTCGAC | 1 cut(s) | 434 |
| SapI | GCTCTTC | 1 cut(s) | 459 |
| SaqAI | TTAA | 3 cut(s) | 944, 992, 1110 |
| SatI | GCNGC | 4 cut(s) | 6, 525, 1284, 1394 |
| Sau3AI | GATC | 6 cut(s) | 28, 133, 489, 967, 1101, 1204 |
| Sau96I | GGNCC | 2 cut(s) | 332, 393 |
| ScaI | AGTACT | 1 cut(s) | 1180 |
| SchI | GAGTC | 4 cut(s) | 605, 730, 839, 1161 |
| ScrFI | CCNGG | 3 cut(s) | 171, 494, 1277 |
| SduI | GDGCHC | 1 cut(s) | 444 |
| SexAI | ACCWGGT | 1 cut(s) | 1275 |
| SfaNI | GCATC | 3 cut(s) | 78, 760, 1285 |
| SfcI | CTRYAG | 2 cut(s) | 1079, 1394 |
| SfuI | TTCGAA | 1 cut(s) | 958 |
| SinI | GGWCC | 1 cut(s) | 393 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 381 |
| SphI | GCATGC | 1 cut(s) | 773 |
| SsiI | CCGC | 3 cut(s) | 5, 86, 538 |
| SspMI | CTAG | 4 cut(s) | 47, 186, 498, 702 |
| StyD4I | CCNGG | 3 cut(s) | 169, 492, 1275 |
| StyI | CCWWGG | 2 cut(s) | 253, 328 |
| TaaI | ACNGT | 6 cut(s) | 117, 295, 698, 760, 997, 1108 |
| TaiI | ACGT | 3 cut(s) | 63, 610, 911 |
| TaqI | TCGA | 3 cut(s) | 81, 435, 958 |
| TatI | WGTACW | 4 cut(s) | 178, 1178, 1336, 1342 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 3 cut(s) | 458, 884, 1194 |
| Tru1I | TTAA | 3 cut(s) | 944, 992, 1110 |
| Tru9I | TTAA | 3 cut(s) | 944, 992, 1110 |
| TscAI | CASTG | 3 cut(s) | 115, 577, 1111 |
| TseFI | GTSAC | 3 cut(s) | 383, 608, 1214 |
| TseI | GCWGC | 3 cut(s) | 524, 1283, 1393 |
| Tsp45I | GTSAC | 3 cut(s) | 383, 608, 1214 |
| TspDTI | ATGAA | 1 cut(s) | 365 |
| TspRI | CASTG | 3 cut(s) | 115, 577, 1111 |
| VpaK11BI | GGWCC | 1 cut(s) | 393 |
| XapI | RAATTY | 4 cut(s) | 37, 97, 866, 1187 |
| XbaI | TCTAGA | 1 cut(s) | 185 |
| XceI | RCATGY | 3 cut(s) | 349, 512, 773 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 673, 867 |
| XmiI | GTMKAC | 3 cut(s) | 75, 435, 1257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 117 |
| XspI | CTAG | 4 cut(s) | 47, 186, 498, 702 |
| ZrmI | AGTACT | 1 cut(s) | 1180 |