Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002219

Physical Location & Seq

Genomic Coordinates Reverse (-)

85366695 .. 85371465

Gene Structure 4771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG628200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGGGCTTACAGCAACGACGGCGTTTTGTTGTCTCCGATATACAGTTTGAGTTCCGGCCAAGACCTCCGTTCCTCCAAGCACGTCTACGACAATGTCCACGGCAACATTTACCTCGATCCGCTTTCTTTGAAGTTTATTGATACTGAGGAGTTTCAGAGGCTTAGAGACCTGAAACAACTCGGAGTGACAAACTCAGTTTTTCCTGGGGCTGTGCATTCCAGGTTTGAGCATTCGCTTGGTGTCTATTGGCTTGCTGGTGAAGCTGTTCAGAGGCTCAAAAATTATCAGGGTCTCGAACTTGATATTGACCGCTTTGATCTCCAGACAGTAAAAATTGCAGGTCTATTGCATGATGTTGGCCATGGGCCTTTCAGTCACTTGTTTGAACGGGAGTTTCTTCCACGGGTTCGGAGTGGTTCCCGTTGGTCTCATGAGGATATGTCAGTTAAGATGATTGACCACATTGTTAATCAGCATCATATTGATATTGACCCTGAGATGATTAAAAGAGTTAAGGAGATGATACTTGCTTCGGAAAATGCCAACGCAAAAAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGTCGTAATGGTATTGATGTGGACAAGTTTGATTATATTGTCCGTGACAGCCGAGCTTGTGGGCTGGGATGTAATTTTGAGTTTCGAAGATTAATGGAAACAATGCGGGTTTTGGATGATGAGATCTGCTACCGTGCTAAAGACTATCTCACTGTCCACAAATTATTTGTCACTCGGGCGGATTTGTATCGAACAGTTTATACACATCCAAAAGTAAAGGCCATAGAGCTTATGGTGGTGGATGCCCTGGTGAAAGCAAATGATTATCTACAAATATCATCTCACATTGAGGATCCAGCTGAATATTGGAAGTTAGATGACTCAATAATCAGAACTATTGAGACAGCTCCGAATGAAGAGCTAAAGGAGGCTAGGGACTTAATCCTGCGCATTAGGAGGAGAAATCTCTATCAGTTCTGCAATGAGTATGCTGTACCCAAGGAGCAAGTGGAACATTTCAAAAACGTCACTGCTCAAGATATTGTTTGTTCTCAGGTCCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

367

Amino Acids

42.48

Weight (kDa)

6.02

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD	PF01966	75 - 167	1.7e-11	HD domain
HD_assoc_2	PF19276	227 - 337	4.8e-07	HD associated region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40270 AT5G40270 AT5G40290
fragaria_vesca	FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610
malus_domestica	MD09G1034800.v1.1 MD16G1092000.v1.1
prunus_persica	Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1
pyrus_communis	pycom111g02770 pycom16g07850
rosa_chinensis	RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921
rosa_laevigata	RLG00000005877 RLG00000022010
rosa_multiflora	Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080690 Rroxscaffold_5G00384470
rosa_rugosa	Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200
rosa_samantha	Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900
rosa_wichuraiana	Rw2G052030 Rw4G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	986
Acc36I	ACCTGC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	4 cut(s)	122, 313, 703, 776
AclWI	GGATC	3 cut(s)	113, 884, 897
AcoI	YGGCCR	2 cut(s)	58, 361
AfaI	GTAC	1 cut(s)	1032
AgsI	TTSAA	3 cut(s)	133, 389, 1057
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	4 cut(s)	205, 221, 560, 843
AluBI	AGCT	7 cut(s)	266, 558, 653, 826, 896, 944, 958
AluI	AGCT	7 cut(s)	266, 558, 653, 826, 896, 944, 958
Alw26I	GTCTC	5 cut(s)	39, 162, 299, 435, 932
AlwI	GGATC	3 cut(s)	113, 884, 897
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	4 cut(s)	58, 361, 368, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	750, 782
AseI	ATTAAT	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	987
AspS9I	GGNCC	2 cut(s)	368, 1093
AsuHPI	GGTGA	2 cut(s)	272, 859
AsuII	TTCGAA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	1 cut(s)	1093
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	889
BceAI	ACGGC	2 cut(s)	37, 118
BciT130I	CCWGG	4 cut(s)	207, 223, 562, 845
BcoDI	GTCTC	5 cut(s)	39, 162, 299, 435, 932
BfaI	CTAG	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	720
Bme1390I	CCNGG	4 cut(s)	207, 223, 562, 845
Bme18I	GGWCC	1 cut(s)	1093
BmeT110I	CYCGRG	1 cut(s)	771
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	368, 1093
BmiI	GGNNCC	3 cut(s)	421, 891, 1095
BmrFI	CCNGG	4 cut(s)	207, 223, 562, 845
BmsI	GCATC	2 cut(s)	487, 829
BpmI	CTGGAG	2 cut(s)	308, 544
Bpu14I	TTCGAA	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	1056
BsaBI	GATNNNNATC	1 cut(s)	783
BsaI	GGTCTC	3 cut(s)	162, 299, 435
BsaJI	CCNNGG	7 cut(s)	100, 206, 364, 404, 561, 843, 1035
Bse3DI	GCAATG	1 cut(s)	1024
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	207, 223, 562, 845
BseDI	CCNNGG	7 cut(s)	100, 206, 364, 404, 561, 843, 1035
BseGI	GGATG	4 cut(s)	671, 718, 802, 844
BseJI	GATNNNNATC	1 cut(s)	783
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	4 cut(s)	138, 210, 489, 1103
BseRI	GAGGAG	2 cut(s)	164, 1009
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	4 cut(s)	60, 363, 370, 818
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	986, 1079
BsmAI	GTCTC	5 cut(s)	39, 162, 299, 435, 932
BsmFI	GGGAC	2 cut(s)	986, 1079
BsmI	GAATGC	2 cut(s)	217, 232
BsnI	GGCC	4 cut(s)	60, 363, 370, 818
Bso31I	GGTCTC	3 cut(s)	162, 299, 435
BsoBI	CYCGRG	1 cut(s)	771
Bsp119I	TTCGAA	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	118, 319, 720, 889
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	4 cut(s)	122, 313, 703, 776
BspANI	GGCC	4 cut(s)	60, 363, 370, 818
BspCNI	CTCAG	4 cut(s)	139, 209, 490, 1102
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	421, 891, 1095
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	3 cut(s)	113, 884, 897
BspQI	GCTCTTC	1 cut(s)	948
BspT104I	TTCGAA	1 cut(s)	682
BspTNI	GGTCTC	3 cut(s)	162, 299, 435
BsrDI	GCAATG	1 cut(s)	1024
BssECI	CCNNGG	7 cut(s)	100, 206, 364, 404, 561, 843, 1035
BssMI	GATC	4 cut(s)	118, 319, 720, 889
BssT1I	CCWWGG	2 cut(s)	364, 1035
Bst2UI	CCWGG	4 cut(s)	207, 223, 562, 845
Bst4CI	ACNGT	5 cut(s)	47, 331, 731, 751, 793
Bst6I	CTCTTC	1 cut(s)	948
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	5 cut(s)	147, 164, 196, 498, 1089
BstDSI	CCRYGG	3 cut(s)	100, 364, 404
BstF5I	GGATG	4 cut(s)	671, 718, 802, 844
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	4 cut(s)	121, 322, 723, 892
BstMAI	GTCTC	5 cut(s)	39, 162, 299, 435, 932
BstMBI	GATC	4 cut(s)	118, 319, 720, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 263
BstNI	CCWGG	4 cut(s)	207, 223, 562, 845
BstSCI	CCNGG	4 cut(s)	205, 221, 560, 843
BstX2I	RGATCY	2 cut(s)	720, 889
BstYI	RGATCY	2 cut(s)	720, 889
BsuRI	GGCC	4 cut(s)	60, 363, 370, 818
BtgI	CCRYGG	3 cut(s)	100, 364, 404
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	671, 718, 802, 844
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	2 cut(s)	747, 1065
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	987
Cfr13I	GGNCC	2 cut(s)	368, 1093
Csp6I	GTAC	1 cut(s)	1031
CviAII	CATG	3 cut(s)	353, 365, 434
CviQI	GTAC	1 cut(s)	1031
DdeI	CTNAG	5 cut(s)	147, 164, 196, 498, 1089
DpnI	GATC	4 cut(s)	120, 321, 722, 891
DpnII	GATC	4 cut(s)	118, 319, 720, 889
EaeI	YGGCCR	2 cut(s)	58, 361
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
EciI	GGCGGA	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	364, 1035
Eco31I	GGTCTC	3 cut(s)	162, 299, 435
Eco47I	GGWCC	1 cut(s)	1093
Eco88I	CYCGRG	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	1093
EcoRII	CCWGG	4 cut(s)	205, 221, 560, 843
EcoT14I	CCWWGG	2 cut(s)	364, 1035
ErhI	CCWWGG	2 cut(s)	364, 1035
FaeI	CATG	3 cut(s)	356, 368, 437
FaqI	GGGAC	2 cut(s)	986, 1079
FatI	CATG	3 cut(s)	352, 364, 433
FauI	CCCGC	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	4 cut(s)	678, 725, 789, 851
FspBI	CTAG	1 cut(s)	969
FspI	TGCGCA	1 cut(s)	986
GlaI	GCGC	1 cut(s)	986
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	308, 544
HaeIII	GGCC	4 cut(s)	60, 363, 370, 818
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	3 cut(s)	356, 368, 437
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HinfI	GANTC	1 cut(s)	917
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	272, 859
Hpy166II	GTNNAC	4 cut(s)	88, 100, 619, 754
Hpy188I	TCNGA	8 cut(s)	39, 159, 185, 273, 414, 538, 929, 948
Hpy188III	TCNNGA	4 cut(s)	296, 325, 434, 1073
Hpy8I	GTNNAC	4 cut(s)	88, 100, 619, 754
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	5 cut(s)	47, 331, 731, 751, 793
HpyCH4IV	ACGT	2 cut(s)	84, 1062
HpyCH4V	TGCA	4 cut(s)	217, 341, 352, 1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 263
HpyF3I	CTNAG	5 cut(s)	147, 164, 196, 498, 1089
HpySE526I	ACGT	2 cut(s)	84, 1062
Hsp92II	CATG	3 cut(s)	356, 368, 437
HspAI	GCGC	1 cut(s)	985
Kzo9I	GATC	4 cut(s)	118, 319, 720, 889
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	3 cut(s)	563, 949, 1039
LweI	GCATC	2 cut(s)	487, 829
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	2 cut(s)	84, 1062
MaeIII	GTNAC	5 cut(s)	187, 377, 641, 766, 1063
MalI	GATC	4 cut(s)	120, 321, 722, 891
MboI	GATC	4 cut(s)	118, 319, 720, 889
MboII	GAAGA	3 cut(s)	392, 696, 965
MflI	RGATCY	2 cut(s)	720, 889
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	283, 336, 585, 670, 758
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	911
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	7 cut(s)	450, 471, 507, 516, 689, 977, 1102
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	4 cut(s)	207, 223, 562, 845
Mva1269I	GAATGC	2 cut(s)	217, 232
MvaI	CCWGG	4 cut(s)	207, 223, 562, 845
MwoI	GCNNNNNNNGC	2 cut(s)	21, 263
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	4 cut(s)	118, 319, 720, 889
NlaIII	CATG	3 cut(s)	356, 368, 437
NlaIV	GGNNCC	3 cut(s)	421, 891, 1095
NmeAIII	GCCGAG	1 cut(s)	674
NmuCI	GTSAC	5 cut(s)	187, 377, 641, 766, 1063
NsbI	TGCGCA	1 cut(s)	986
NspV	TTCGAA	1 cut(s)	682
PagI	TCATGA	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	948
PctI	GAATGC	2 cut(s)	217, 232
PdmI	GAANNNNTTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	1093
PshBI	ATTAAT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	1093
Psp6I	CCWGG	4 cut(s)	205, 221, 560, 843
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	4 cut(s)	205, 221, 560, 843
PspN4I	GGNNCC	3 cut(s)	421, 891, 1095
PspPI	GGNCC	2 cut(s)	368, 1093
PspPPI	RGGWCCY	1 cut(s)	1093
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PsuI	RGATCY	2 cut(s)	720, 889
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	1 cut(s)	1032
RsaNI	GTAC	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	7 cut(s)	450, 471, 507, 516, 689, 977, 1102
Sau3AI	GATC	4 cut(s)	118, 319, 720, 889
Sau96I	GGNCC	2 cut(s)	368, 1093
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	4 cut(s)	207, 223, 562, 845
SfaNI	GCATC	2 cut(s)	487, 829
SfuI	TTCGAA	1 cut(s)	682
SinI	GGWCC	1 cut(s)	1093
SmlI	CTYRAG	1 cut(s)	1071
SmoI	CTYRAG	1 cut(s)	1071
Sse9I	AATT	5 cut(s)	283, 336, 585, 670, 758
SsiI	CCGC	4 cut(s)	122, 313, 703, 776
SspI	AATATT	1 cut(s)	902
SspMI	CTAG	1 cut(s)	969
StyD4I	CCNGG	4 cut(s)	205, 221, 560, 843
StyI	CCWWGG	2 cut(s)	364, 1035
TaaI	ACNGT	5 cut(s)	47, 331, 731, 751, 793
TaiI	ACGT	2 cut(s)	87, 1065
TaqI	TCGA	4 cut(s)	117, 297, 682, 787
TasI	AATT	5 cut(s)	283, 336, 585, 670, 758
Tru1I	TTAA	7 cut(s)	450, 471, 507, 516, 689, 977, 1102
Tru9I	TTAA	7 cut(s)	450, 471, 507, 516, 689, 977, 1102
TscAI	CASTG	2 cut(s)	754, 1072
TseFI	GTSAC	5 cut(s)	187, 377, 641, 766, 1063
Tsp45I	GTSAC	5 cut(s)	187, 377, 641, 766, 1063
TspDTI	ATGAA	2 cut(s)	597, 966
TspGWI	ACGGA	2 cut(s)	59, 629
TspRI	CASTG	2 cut(s)	754, 1072
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	1093
VspI	ATTAAT	1 cut(s)	689
XcmI	CCANNNNNNNNNTGG	3 cut(s)	826, 900, 1042
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.