Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Reverse (-)

18774056 .. 18776839

Gene Structure 2784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCAAGCTCTTCAATCTTCATCTCTCCGTGCTTCTCCTCCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGCTAATTACCAATGCGAGACCTTTGCGAAGACAACAACGTTCCTTCATCTCCGCATCAGCATCCACTGTCTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTATGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGAGAAATTGTTGTCTGGTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCGGTGGTCAGATCCGTGGGTTTAGCTCTGAAGGTTATATTGATGGCAAGAATGAGCGTAGGCTTGATGATTGTTTGAAATATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATCTTGGTGGTGATAAGCTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTGGAATGGGAGGTTTAACTGTGTTTTCAGAAGGTGTTCAGAATTTGATTGAGAAGGGTCATAGGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAATATGGGTTCTGCTTTGTTGGCGATTGATCTTGGTCTTATGGGTCCTAACTATTCGATTTCAACTGCTTGTGCTACTTCGAATTACTGCTTTTACGCTGCTGCGAATCACATTCGTCGTGGTGAAGCTGATATGATGATTGCTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGGCATTGTCCCAGAGAAATGATGACCCTCAAACTGCTTCCAGGCCGTGGGATAAAGCAAGAGATGGGTTTGTTATGGGTGAAGGAGCTGGTGTTCTGGTGATGGAAAGCTTGGAACATGCAATGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTCACCATATGACTGATCCAAGAGCTGATGGTCTTGGGGTTTCTTCATGCATTGAAAGATGCCTGGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACTTCCACTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAGGGATCAAAATCAACGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTCTAGAAGCCATCGCCACCGTGAAGGCTATCAACACTGGATGGCTGCATCCTTCCATCAACCAATTTAACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAACACGAGGTTGATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCGGTAGTCGCCTTCTCTGCCTTCAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

473

Amino Acids

50.41

Weight (kDa)

8.29

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	61 - 197	2e-17	Beta-ketoacyl synthase, N-terminal domain
ketoacyl-synt	PF00109	199 - 252	3.3e-09	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	261 - 372	1.6e-35	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccBSI	CCGCTC	1 cut(s)	155
AccII	CGCG	1 cut(s)	165
AciI	CCGC	2 cut(s)	132, 153
AclI	AACGTT	1 cut(s)	118
AclWI	GGATC	4 cut(s)	167, 325, 989, 1172
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	369, 1143
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgsI	TTSAA	7 cut(s)	14, 397, 431, 663, 1034, 1150, 1414
AhlI	ACTAGT	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	839, 1041
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
Alw21I	GWGCWC	2 cut(s)	937, 1157
Alw26I	GTCTC	4 cut(s)	91, 154, 212, 217
AlwI	GGATC	4 cut(s)	167, 325, 989, 1172
AoxI	GGCC	1 cut(s)	842
ApeKI	GCWGC	5 cut(s)	698, 701, 758, 1211, 1264
ApoI	RAATTY	1 cut(s)	541
AseI	ATTAAT	1 cut(s)	1128
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	644, 1318
AsuHPI	GGTGA	8 cut(s)	275, 461, 734, 890, 910, 974, 1053, 1124
AsuII	TTCGAA	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	644, 1318
AxyI	CCTNAGG	1 cut(s)	1065
BauI	CACGAG	1 cut(s)	1340
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	937, 1157
BbvI	GCAGC	5 cut(s)	685, 688, 745, 1223, 1251
BccI	CCATC	8 cut(s)	67, 356, 857, 895, 1001, 1238, 1254, 1283
BceAI	ACGGC	1 cut(s)	829
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 218, 252
BciT130I	CCWGG	2 cut(s)	841, 1043
BcoDI	GTCTC	4 cut(s)	91, 154, 212, 217
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	2 cut(s)	491, 1223
BisI	GCNGC	5 cut(s)	699, 702, 759, 1212, 1265
BlsI	GCNGC	5 cut(s)	700, 703, 760, 1213, 1266
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	841, 1043
Bme18I	GGWCC	2 cut(s)	644, 1318
BmgT120I	GGNCC	2 cut(s)	644, 1318
BmiI	GGNNCC	2 cut(s)	645, 1320
BmrFI	CCNGG	2 cut(s)	841, 1043
BmsI	GCATC	8 cut(s)	143, 149, 226, 286, 967, 1028, 1039, 1276
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	2 cut(s)	504, 1236
Bpu14I	TTCGAA	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	1169
BsaI	GGTCTC	2 cut(s)	91, 212
BsaJI	CCNNGG	3 cut(s)	334, 845, 1204
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	3 cut(s)	202, 505, 1261
Bse21I	CCTNAGG	1 cut(s)	1065
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	1169
BseBI	CCWGG	2 cut(s)	841, 1043
BseDI	CCNNGG	3 cut(s)	334, 845, 1204
BseGI	GGATG	3 cut(s)	140, 1265, 1267
BseJI	GATNNNNATC	1 cut(s)	1169
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	3 cut(s)	744, 1056, 1113
BseNI	ACTGG	3 cut(s)	202, 505, 1261
BseRI	GAGGAG	2 cut(s)	27, 1082
BseXI	GCAGC	5 cut(s)	685, 688, 745, 1223, 1251
BsgI	GTGCAG	1 cut(s)	1230
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	844
BsiHKAI	GWGCWC	2 cut(s)	937, 1157
BslFI	GGGAC	4 cut(s)	511, 763, 793, 1304
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	4 cut(s)	91, 154, 212, 217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	4 cut(s)	511, 763, 793, 1304
BsnI	GGCC	1 cut(s)	844
Bso31I	GGTCTC	2 cut(s)	91, 212
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	937, 1157
Bsp143I	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
BspACI	CCGC	2 cut(s)	132, 153
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	3 cut(s)	745, 1057, 1114
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	645, 1320
BspPI	GGATC	4 cut(s)	167, 325, 989, 1172
BspQI	GCTCTTC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	680
BspTNI	GGTCTC	2 cut(s)	91, 212
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	927
BsrI	ACTGG	3 cut(s)	202, 505, 1261
BssECI	CCNNGG	3 cut(s)	334, 845, 1204
BssMI	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
BssSI	CACGAG	1 cut(s)	1340
Bst2BI	CACGAG	1 cut(s)	1340
Bst2UI	CCWGG	2 cut(s)	841, 1043
Bst4CI	ACNGT	4 cut(s)	148, 520, 1240, 1318
Bst6I	CTCTTC	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	753, 1065, 1122
BstDSI	CCRYGG	2 cut(s)	334, 845
BstF5I	GGATG	3 cut(s)	140, 1265, 1267
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	7 cut(s)	175, 289, 333, 631, 997, 1117, 1167
BstMAI	GTCTC	4 cut(s)	91, 154, 212, 217
BstMBI	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 800, 1406
BstNI	CCWGG	2 cut(s)	841, 1043
BstNSI	RCATGY	2 cut(s)	920, 1094
BstSCI	CCNGG	2 cut(s)	839, 1041
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	5 cut(s)	685, 688, 745, 1223, 1251
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	2 cut(s)	172, 330
BstYI	RGATCY	2 cut(s)	172, 330
Bsu36I	CCTNAGG	1 cut(s)	1065
BsuRI	GGCC	1 cut(s)	844
BtgI	CCRYGG	2 cut(s)	334, 845
BtgZI	GCGATG	1 cut(s)	1216
BtsCI	GGATG	3 cut(s)	140, 1265, 1267
BtsI	GCAGTG	1 cut(s)	1198
BtsIMutI	CAGTG	3 cut(s)	144, 1198, 1254
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	644, 1318
Csp6I	GTAC	1 cut(s)	488
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	3 cut(s)	917, 1026, 1091
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	3 cut(s)	753, 1065, 1122
DpnI	GATC	7 cut(s)	174, 288, 332, 630, 996, 1116, 1166
DpnII	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco31I	GGTCTC	2 cut(s)	91, 212
Eco47I	GGWCC	2 cut(s)	644, 1318
Eco57I	CTGAAG	2 cut(s)	369, 1143
Eco81I	CCTNAGG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	839, 1041
EcoT22I	ATGCAT	1 cut(s)	1031
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	3 cut(s)	920, 1029, 1094
FaqI	GGGAC	4 cut(s)	511, 763, 793, 1304
FatI	CATG	3 cut(s)	916, 1025, 1090
FauNDI	CATATG	1 cut(s)	987
Fnu4HI	GCNGC	5 cut(s)	699, 702, 759, 1212, 1265
FokI	GGATG	3 cut(s)	127, 1254, 1272
Fsp4HI	GCNGC	5 cut(s)	699, 702, 759, 1212, 1265
FspBI	CTAG	2 cut(s)	491, 1223
GluI	GCNGC	5 cut(s)	699, 702, 759, 1212, 1265
GsuI	CTGGAG	2 cut(s)	504, 1236
HaeIII	GGCC	1 cut(s)	844
Hin1II	CATG	3 cut(s)	920, 1029, 1094
HindIII	AAGCTT	2 cut(s)	455, 907
HinfI	GANTC	3 cut(s)	273, 318, 706
HphI	GGTGA	8 cut(s)	275, 461, 734, 890, 910, 974, 1053, 1124
Hpy166II	GTNNAC	2 cut(s)	1306, 1382
Hpy188I	TCNGA	5 cut(s)	177, 330, 349, 529, 540
Hpy188III	TCNNGA	3 cut(s)	428, 1150, 1223
Hpy8I	GTNNAC	2 cut(s)	1306, 1382
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	9 cut(s)	133, 344, 524, 547, 875, 1237, 1281, 1411, 1420
HpyCH4III	ACNGT	4 cut(s)	148, 520, 1240, 1318
HpyCH4IV	ACGT	2 cut(s)	118, 928
HpyCH4V	TGCA	8 cut(s)	4, 405, 920, 1029, 1088, 1094, 1211, 1267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 800, 1406
HpyF3I	CTNAG	3 cut(s)	753, 1065, 1122
HpySE526I	ACGT	2 cut(s)	118, 928
Hsp92II	CATG	3 cut(s)	920, 1029, 1094
Kzo9I	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	160, 884, 940
Lsp1109I	GCAGC	5 cut(s)	685, 688, 745, 1223, 1251
LweI	GCATC	8 cut(s)	143, 149, 226, 286, 967, 1028, 1039, 1276
MaeI	CTAG	2 cut(s)	491, 1223
MaeII	ACGT	2 cut(s)	118, 928
MaeIII	GTNAC	2 cut(s)	224, 1196
MalI	GATC	7 cut(s)	174, 288, 332, 630, 996, 1116, 1166
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
MboII	GAAGA	6 cut(s)	9, 120, 190, 1014, 1058, 1342
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	172, 330
MhlI	GDGCHC	2 cut(s)	937, 1157
MluCI	AATT	8 cut(s)	84, 251, 541, 682, 939, 970, 1075, 1283
Mph1103I	ATGCAT	1 cut(s)	1031
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	6 cut(s)	459, 515, 969, 1128, 1137, 1287
MspA1I	CMGCKG	1 cut(s)	1214
MspR9I	CCNGG	2 cut(s)	841, 1043
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	2 cut(s)	841, 1043
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	620, 800, 1406
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
NlaIII	CATG	3 cut(s)	920, 1029, 1094
NlaIV	GGNNCC	2 cut(s)	645, 1320
NmuCI	GTSAC	1 cut(s)	1196
NsiI	ATGCAT	1 cut(s)	1031
NspI	RCATGY	2 cut(s)	920, 1094
NspV	TTCGAA	1 cut(s)	680
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	273, 318, 706
PflFI	GACNNNGTC	1 cut(s)	1316
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	5 cut(s)	700, 703, 760, 1213, 1266
PpuMI	RGGWCCY	1 cut(s)	644
PshBI	ATTAAT	1 cut(s)	1128
Psp1406I	AACGTT	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	839, 1041
PspGI	CCWGG	2 cut(s)	839, 1041
PspN4I	GGNNCC	2 cut(s)	645, 1320
PspPI	GGNCC	2 cut(s)	644, 1318
PspPPI	RGGWCCY	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	172, 330
PsyI	GACNNNGTC	1 cut(s)	1316
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	6 cut(s)	459, 515, 969, 1128, 1137, 1287
SatI	GCNGC	5 cut(s)	699, 702, 759, 1212, 1265
Sau3AI	GATC	7 cut(s)	172, 286, 330, 628, 994, 1114, 1164
Sau96I	GGNCC	2 cut(s)	644, 1318
ScaI	AGTACT	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	841, 1043
SduI	GDGCHC	2 cut(s)	937, 1157
SfaNI	GCATC	8 cut(s)	143, 149, 226, 286, 967, 1028, 1039, 1276
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	2 cut(s)	644, 1318
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	8 cut(s)	84, 251, 541, 682, 939, 970, 1075, 1283
SsiI	CCGC	2 cut(s)	132, 153
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	2 cut(s)	491, 1223
StyD4I	CCNGG	2 cut(s)	839, 1041
TaaI	ACNGT	4 cut(s)	148, 520, 1240, 1318
TaiI	ACGT	2 cut(s)	121, 931
TaqI	TCGA	4 cut(s)	294, 316, 656, 680
TasI	AATT	8 cut(s)	84, 251, 541, 682, 939, 970, 1075, 1283
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	3 cut(s)	273, 318, 706
Tru1I	TTAA	6 cut(s)	459, 515, 969, 1128, 1137, 1287
Tru9I	TTAA	6 cut(s)	459, 515, 969, 1128, 1137, 1287
TscAI	CASTG	3 cut(s)	151, 1205, 1261
TseFI	GTSAC	1 cut(s)	1196
TseI	GCWGC	5 cut(s)	698, 701, 758, 1211, 1264
Tsp45I	GTSAC	1 cut(s)	1196
TspDTI	ATGAA	4 cut(s)	9, 115, 938, 1014
TspGWI	ACGGA	2 cut(s)	17, 323
TspRI	CASTG	3 cut(s)	151, 1205, 1261
Tth111I	GACNNNGTC	1 cut(s)	1316
Van91I	CCANNNNNTGG	1 cut(s)	846
VpaK11BI	GGWCC	2 cut(s)	644, 1318
VspI	ATTAAT	1 cut(s)	1128
XapI	RAATTY	1 cut(s)	541
XbaI	TCTAGA	1 cut(s)	1222
XceI	RCATGY	2 cut(s)	920, 1094
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	491, 1223
ZrmI	AGTACT	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.