FvH4_3g05870

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3410401 .. 3413206
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05870.t2

Sequence Viewer

Length: 1410 bp
ATGCAAGCCATTCAATCCTCCACGCTCCGACCCGCCCCGCTCGACCCGCTCCGCAAACGGACCCACTTCCCCAACCTCACTCCCAGACCCGCCCCTAGACGCGTCTCCTTCATCTCCGCCTCATCCGCCACAACTGTCTCGGCCCCCACGCGCGAGAAGGACCCCAAGAAGCGCGTGGTCATCACCGGCCTCGGCTGCGTCTCCGTCTTCGGCAACGACGTTAACGCCTACTACGACAAGCTCCTCGCCGGCGAGAGCGGCGTCGGTCCCATCGACCGGTTCGATGCGTCCAAGTTCCCCACCCGCTTCGGCGGCCAGATCCGCGGCTTCACCTCCGAGGGCTACATTGACGGCAAGAACGATCGCCGCCTCGACGATTGCCTCCGCTACGCCATTGTCGCCGGCAAGAAAGCTCTCGAAGATGCTGATCTCGGCGCCGATAACCGCCCCAAGCTTGATAAGTCGAGGGCCGGTGTGCTAGTTGGATCAGGGATGGGTGGTCTTACTGTGTTTTCTGACGGTGTTCATGCACTGATAGATAAGGGTCACAGGAAGATTACCCCGTTTTTCATTCCTTATGCTATTACAAACATGGGATCCGCTTTGCTTGGGATTGATCTGGGTTTTATGGGGCCGAATTACTCAATCTCGACTGCTTGTGCTACTTCAAATTACTGTTTCTATGCTGCCGCGAATCACATTCGTCGGGGCGAGGCTGATTTGATGATTGCTGGTGGGACTGAGGCGGCCTTGATTCCCATTGGGCTTGGGGGGTTTGTTGCATGCAGGGCGTTGTCTCAGAGAAATGATGATCCGAAAACTGCTTCTAGGCCGTGGGACAAAGATAGGGATGGCTTTGTTATGGGTGAAGGTGCTGGAATATTGGTAATGGAGAGCTTGGAACATGCGATGAAACGAGGTGCACCTATTATTGCCGAGTACTTGGGAGGTGCTATTAACTGTGATGCATATCATATGACTGATCCAAGAGCTGATGGACTTGGTGTATCCACATGCATAGAGAGAAGCCTTGAAGATTCTGGTGTATCGCCTGAAGAGGTCAACTACATCAATGCACATGCAACTTCCACCCTTGCGGGTGATCTAGCTGAGGTTAATGCTATAAAGAAAGTGTTCAAGAACACTAAAGAGATTAAAATCAATGCTACTAAGTCTATGATCGGTCACTGCCTCGGTGCCTCTGGGGGTTTGGAAGCTATTGCTACAGTGAAAGCCATACAAACAGGATGGCTCCATCCTTCTATAAACCAATTTAATCCAGAACCTTCAGTTGAGTTTGACACTGTTGCAAATGTAAAGCAGCAGCACGAAGTGAATGTTGCCATATCAAATTCGTTCGGATTTGGAGGACACAACTCTGTGGTTGCGTTTTCTGCGTTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

49.98

Weight (kDa)

8.04

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 57 - 303 3e-56 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 312 - 423 1.3e-34 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 434, 1196
AccBSI CCGCTC 3 cut(s) 40, 49, 258
AccII CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
AclWI GGATC 6 cut(s) 313, 493, 591, 604, 806, 977
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 1351
AcuI CTGAAG 2 cut(s) 1074, 1272
AcyI GRCGYC 2 cut(s) 261, 435
AdeI CACNNNGTG 1 cut(s) 1333
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 1 cut(s) 276
AflIII ACRYGT 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 5 cut(s) 14, 669, 1034, 1138, 1402
AluBI AGCT 7 cut(s) 241, 413, 454, 897, 992, 1109, 1217
AluI AGCT 7 cut(s) 241, 413, 454, 897, 992, 1109, 1217
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 4 cut(s) 109, 142, 205, 801
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 6 cut(s) 313, 493, 591, 604, 806, 977
AoxI GGCC 7 cut(s) 141, 187, 313, 468, 632, 747, 830
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 4 cut(s) 195, 686, 1321, 1324
ApoI RAATTY 1 cut(s) 1351
AsiGI ACCGGT 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 1133
AspLEI GCGC 3 cut(s) 153, 174, 437
AspS9I GGNCC 6 cut(s) 60, 142, 160, 266, 468, 632
AsuHPI GGTGA 4 cut(s) 175, 322, 878, 1112
AvaII GGWCC 3 cut(s) 60, 160, 266
BaeGI GKGCMC 1 cut(s) 925
BamHI GGATCC 1 cut(s) 596
BanI GGYRCC 2 cut(s) 434, 1196
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 925
BbvCI CCTCAGC 1 cut(s) 1110
BbvI GCAGC 4 cut(s) 182, 673, 1333, 1336
BccI CCATC 6 cut(s) 278, 487, 845, 989, 1242, 1263
BceAI ACGGC 2 cut(s) 367, 817
BciVI GTATCC 1 cut(s) 1018
BcoDI GTCTC 4 cut(s) 109, 142, 205, 801
BfaI CTAG 4 cut(s) 96, 479, 828, 1106
BfmI CTRYAG 1 cut(s) 1224
BfoI RGCGCY 1 cut(s) 438
BfuI GTATCC 1 cut(s) 1018
BmcAI AGTACT 1 cut(s) 941
Bme18I GGWCC 3 cut(s) 60, 160, 266
BmgT120I GGNCC 6 cut(s) 60, 142, 160, 266, 468, 632
BmiI GGNNCC 9 cut(s) 62, 144, 162, 268, 436, 598, 633, 1198, 1253
BmsI GCATC 3 cut(s) 274, 412, 955
BpiI GAAGAC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 1110
BsaBI GATNNNNATC 3 cut(s) 426, 969, 1157
BsaHI GRCGYC 2 cut(s) 261, 435
BsaJI CCNNGG 5 cut(s) 190, 322, 336, 833, 1192
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 5 cut(s) 185, 248, 276, 401, 470
Bse8I GATNNNNATC 3 cut(s) 426, 969, 1157
BseDI CCNNGG 5 cut(s) 190, 322, 336, 833, 1192
BseGI GGATG 5 cut(s) 122, 498, 856, 1253, 1255
BseJI GATNNNNATC 3 cut(s) 426, 969, 1157
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 732, 812, 1101
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 4 cut(s) 182, 673, 1333, 1336
Bsh1236I CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
Bsh1285I CGRYCG 2 cut(s) 277, 364
BshFI GGCC 7 cut(s) 143, 189, 315, 470, 634, 749, 832
BshNI GGYRCC 2 cut(s) 434, 1196
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 2 cut(s) 277, 364
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 5 cut(s) 186, 249, 277, 402, 471
BslFI GGGAC 3 cut(s) 252, 751, 851
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 4 cut(s) 109, 142, 205, 801
BsmBI CGTCTC 2 cut(s) 109, 205
BsmFI GGGAC 3 cut(s) 252, 751, 851
BsnI GGCC 7 cut(s) 143, 189, 315, 470, 634, 749, 832
Bsp1286I GDGCHC 1 cut(s) 925
BspANI GGCC 7 cut(s) 143, 189, 315, 470, 634, 749, 832
BspCNI CTCAG 3 cut(s) 733, 811, 1102
BspFNI CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
BspLI GGNNCC 9 cut(s) 62, 144, 162, 268, 436, 598, 633, 1198, 1253
BspPI GGATC 6 cut(s) 313, 493, 591, 604, 806, 977
BspT107I GGYRCC 2 cut(s) 434, 1196
BsrBI CCGCTC 3 cut(s) 40, 49, 258
BsrFI RCCGGY 5 cut(s) 185, 248, 276, 401, 470
BssAI RCCGGY 5 cut(s) 185, 248, 276, 401, 470
BssECI CCNNGG 5 cut(s) 190, 322, 336, 833, 1192
BssNI GRCGYC 2 cut(s) 261, 435
Bst4CI ACNGT 7 cut(s) 136, 508, 521, 677, 962, 1228, 1306
Bst6I CTCTTC 1 cut(s) 1050
BstACI GRCGYC 2 cut(s) 261, 435
BstC8I GCNNGC 4 cut(s) 6, 250, 403, 784
BstDEI CTNAG 4 cut(s) 741, 798, 1110, 1170
BstDSI CCRYGG 2 cut(s) 322, 833
BstF5I GGATG 5 cut(s) 122, 498, 856, 1253, 1255
BstFNI CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 3 cut(s) 153, 174, 437
BstMAI GTCTC 4 cut(s) 109, 142, 205, 801
BstMCI CGRYCG 2 cut(s) 277, 364
BstMWI GCNNNNNNNGC 9 cut(s) 46, 125, 195, 258, 312, 321, 398, 788, 1394
BstNSI RCATGY 4 cut(s) 786, 908, 1017, 1082
BstSFI CTRYAG 1 cut(s) 1224
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
BstV1I GCAGC 4 cut(s) 182, 673, 1333, 1336
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 318, 596
BstYI RGATCY 2 cut(s) 318, 596
BsuI GTATCC 1 cut(s) 1018
BsuRI GGCC 7 cut(s) 143, 189, 315, 470, 634, 749, 832
BtgI CCRYGG 2 cut(s) 322, 833
BtgZI GCGATG 1 cut(s) 923
BtsCI GGATG 5 cut(s) 122, 498, 856, 1253, 1255
BtsI GCAGTG 1 cut(s) 1186
BtsIMutI CAGTG 4 cut(s) 530, 1186, 1233, 1302
Cac8I GCNNGC 4 cut(s) 6, 250, 403, 784
CfoI GCGC 3 cut(s) 153, 174, 437
Cfr10I RCCGGY 5 cut(s) 185, 248, 276, 401, 470
Cfr13I GGNCC 6 cut(s) 60, 142, 160, 266, 468, 632
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 5 cut(s) 91, 108, 187, 250, 276
Csp6I GTAC 1 cut(s) 940
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 6 cut(s) 527, 592, 783, 905, 1014, 1079
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 4 cut(s) 741, 798, 1110, 1170
DinI GGCGCC 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 1333
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
EciI GGCGGA 2 cut(s) 106, 115
Eco47I GGWCC 3 cut(s) 60, 160, 266
Eco57I CTGAAG 2 cut(s) 1074, 1272
EcoO109I RGGNCCY 1 cut(s) 160
EcoT22I ATGCAT 2 cut(s) 970, 1019
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
Esp3I CGTCTC 2 cut(s) 109, 205
FaeI CATG 6 cut(s) 530, 595, 786, 908, 1017, 1082
FaqI GGGAC 3 cut(s) 252, 751, 851
FatI CATG 6 cut(s) 526, 591, 782, 904, 1013, 1078
FauI CCCGC 6 cut(s) 40, 45, 54, 97, 311, 1090
FauNDI CATATG 1 cut(s) 975
FokI GGATG 5 cut(s) 109, 505, 863, 1242, 1260
FspBI CTAG 4 cut(s) 96, 479, 828, 1106
GlaI GCGC 3 cut(s) 152, 173, 436
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 7 cut(s) 143, 189, 315, 470, 634, 749, 832
HapII CCGG 5 cut(s) 186, 249, 277, 402, 471
HgaI GACGC 5 cut(s) 91, 108, 187, 250, 276
HhaI GCGC 3 cut(s) 153, 174, 437
Hin1I GRCGYC 2 cut(s) 261, 435
Hin1II CATG 6 cut(s) 530, 595, 786, 908, 1017, 1082
Hin6I GCGC 3 cut(s) 151, 172, 435
HinP1I GCGC 3 cut(s) 151, 172, 435
HincII GTYRAC 2 cut(s) 223, 1063
HindII GTYRAC 2 cut(s) 223, 1063
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 3 cut(s) 694, 754, 1037
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 5 cut(s) 186, 249, 277, 402, 471
HphI GGTGA 4 cut(s) 175, 322, 878, 1112
Hpy166II GTNNAC 3 cut(s) 223, 923, 1063
Hpy188I TCNGA 6 cut(s) 29, 337, 517, 801, 816, 1361
Hpy188III TCNNGA 4 cut(s) 416, 649, 1138, 1280
Hpy8I GTNNAC 3 cut(s) 223, 923, 1063
Hpy99I CGWCG 4 cut(s) 221, 266, 377, 708
HpyAV CCTTC 5 cut(s) 118, 151, 863, 1269, 1296
HpyCH4III ACNGT 7 cut(s) 136, 508, 521, 677, 962, 1228, 1306
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 9 cut(s) 46, 125, 195, 258, 312, 321, 398, 788, 1394
HpyF3I CTNAG 4 cut(s) 741, 798, 1110, 1170
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 2 cut(s) 261, 435
Hsp92II CATG 6 cut(s) 530, 595, 786, 908, 1017, 1082
HspAI GCGC 3 cut(s) 151, 172, 435
KasI GGCGCC 1 cut(s) 434
KroI GCCGGC 2 cut(s) 248, 401
KroNI GCCGGC 2 cut(s) 250, 403
KspAI GTTAAC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 325
LmnI GCTCC 4 cut(s) 30, 54, 246, 1257
Lsp1109I GCAGC 4 cut(s) 182, 673, 1333, 1336
LweI GCATC 3 cut(s) 274, 412, 955
MaeI CTAG 4 cut(s) 96, 479, 828, 1106
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 545, 1184
MbiI CCGCTC 3 cut(s) 40, 49, 258
MboII GAAGA 5 cut(s) 199, 431, 565, 1046, 1067
MflI RGATCY 2 cut(s) 318, 596
MhlI GDGCHC 1 cut(s) 925
MluCI AATT 4 cut(s) 637, 670, 1271, 1351
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 52, 463
Mph1103I ATGCAT 2 cut(s) 970, 1019
MreI CGCCGGCG 1 cut(s) 248
MroNI GCCGGC 2 cut(s) 248, 401
MroXI GAANNNNTTC 1 cut(s) 1133
MseI TTAA 5 cut(s) 222, 957, 1116, 1155, 1275
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 5 cut(s) 186, 249, 277, 402, 471
MvnI CGCG 6 cut(s) 102, 151, 153, 174, 324, 692
MwoI GCNNNNNNNGC 9 cut(s) 46, 125, 195, 258, 312, 321, 398, 788, 1394
NaeI GCCGGC 2 cut(s) 250, 403
NarI GGCGCC 1 cut(s) 435
NdeI CATATG 1 cut(s) 975
NgoMIV GCCGGC 2 cut(s) 248, 401
NlaIII CATG 6 cut(s) 530, 595, 786, 908, 1017, 1082
NlaIV GGNNCC 9 cut(s) 62, 144, 162, 268, 436, 598, 633, 1198, 1253
NmeAIII GCCGAG 4 cut(s) 119, 171, 411, 961
NmuCI GTSAC 2 cut(s) 545, 1184
NsiI ATGCAT 2 cut(s) 970, 1019
NspI RCATGY 4 cut(s) 786, 908, 1017, 1082
PaeI GCATGC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 5 cut(s) 216, 231, 270, 279, 357
PdiI GCCGGC 2 cut(s) 250, 403
PdmI GAANNNNTTC 1 cut(s) 1133
PfeI GAWTC 3 cut(s) 694, 754, 1037
PinAI ACCGGT 1 cut(s) 276
Ple19I CGATCG 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 438
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 9 cut(s) 62, 144, 162, 268, 436, 598, 633, 1198, 1253
PspPI GGNCC 6 cut(s) 60, 142, 160, 266, 468, 632
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 2 cut(s) 318, 596
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
SacII CCGCGG 1 cut(s) 325
SaqAI TTAA 5 cut(s) 222, 957, 1116, 1155, 1275
Sau96I GGNCC 6 cut(s) 60, 142, 160, 266, 468, 632
ScaI AGTACT 1 cut(s) 941
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 3 cut(s) 274, 412, 955
SfcI CTRYAG 1 cut(s) 1224
SfoI GGCGCC 1 cut(s) 436
Sfr303I CCGCGG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 248
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 3 cut(s) 60, 160, 266
SphI GCATGC 1 cut(s) 786
Sse9I AATT 4 cut(s) 637, 670, 1271, 1351
SspDI GGCGCC 1 cut(s) 434
SspI AATATT 1 cut(s) 882
SspMI CTAG 4 cut(s) 96, 479, 828, 1106
TaaI ACNGT 7 cut(s) 136, 508, 521, 677, 962, 1228, 1306
TaiI ACGT 1 cut(s) 222
TaqI TCGA 7 cut(s) 42, 273, 282, 372, 417, 464, 650
TaqII GACCGA 2 cut(s) 254, 1172
TasI AATT 4 cut(s) 637, 670, 1271, 1351
TatI WGTACW 1 cut(s) 939
TauI GCSGC 6 cut(s) 261, 315, 327, 369, 692, 749
TfiI GAWTC 3 cut(s) 694, 754, 1037
Tru1I TTAA 5 cut(s) 222, 957, 1116, 1155, 1275
Tru9I TTAA 5 cut(s) 222, 957, 1116, 1155, 1275
TscAI CASTG 4 cut(s) 537, 1193, 1233, 1309
TseFI GTSAC 2 cut(s) 545, 1184
TseI GCWGC 4 cut(s) 195, 686, 1321, 1324
Tsp45I GTSAC 2 cut(s) 545, 1184
TspDTI ATGAA 4 cut(s) 100, 515, 559, 926
TspGWI ACGGA 2 cut(s) 73, 193
TspRI CASTG 4 cut(s) 537, 1193, 1233, 1309
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 3 cut(s) 60, 160, 266
XapI RAATTY 1 cut(s) 1351
XceI RCATGY 4 cut(s) 786, 908, 1017, 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 1133
XspI CTAG 4 cut(s) 96, 479, 828, 1106
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 2 cut(s) 970, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.