Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Reverse (-)

24535937 .. 24537130

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATCGATCCAAAAACGGCTTCCAGGCCATGGGACAGAGATAGAGATGGCTTTGTTATTGGCGAAGGTGCTGGAGTATTGGTAATGGAGAGCTTGGAACATGCAACAAAACGAGGTGCTACAATTATTGCCGAGTACTTGGGAGGTGGTATTAACTGTGATGCTTATCATATGACTGATCCTAGAGCTGATGGGCTTGGTGTATCTACGTGCATACAGACATGCCTCGAAGATGCTGGTGTATCGCCCGAGGAGGTTAACTACATCAATGCGCATGCAACTTCTACCCTTGCTGGTGACCTCGCCGAGATAAATGCTATAAAGAAGGTGTTCACGAACACTAAAGATATCAAGATCAATGCAACTAAGTCTATGATCGGACACTGTCTTGGTGCTTCGGGGGGTTTGGAAGCTATTGCCGTCATCAAAGCCATAACAACTGGATGGCTGCATCCTTCCATAAACCAATTTAACCCAGAGCCTTCAGTGGAGTTTGACACTGTTCCCAATGTAAAGCAGCAGCATGAAGTGAATGTTGCCATATCGAATTCATTTGGATTTGGCGGACACAACTCCGTTGTGGCCTTCTCTCCTTTCAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

202

Amino Acids

21.34

Weight (kDa)

5.28

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	30
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	2 cut(s)	2, 173
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	93, 188, 413
AluI	AGCT	3 cut(s)	93, 188, 413
AlwI	GGATC	2 cut(s)	2, 173
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	26, 582
ApeKI	GCWGC	3 cut(s)	448, 517, 520
ApoI	RAATTY	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	435, 529, 532
BccI	CCATC	3 cut(s)	41, 185, 438
BceAI	ACGGC	2 cut(s)	33, 404
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	3 cut(s)	449, 518, 521
BlsI	GCNGC	3 cut(s)	450, 519, 522
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	3 cut(s)	151, 223, 460
BpmI	CTGGAG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	29, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	29, 249
BseGI	GGATG	2 cut(s)	449, 451
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	435, 529, 532
BshFI	GGCC	2 cut(s)	28, 584
BshVI	ATCGAT	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	28, 584
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	5 cut(s)	3, 7, 178, 354, 375
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	2 cut(s)	28, 584
BspDI	ATCGAT	1 cut(s)	6
BspPI	GGATC	2 cut(s)	2, 173
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	29, 249
BssMI	GATC	5 cut(s)	3, 7, 178, 354, 375
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	158, 386, 502
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	29
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	449, 451
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	5 cut(s)	6, 10, 181, 357, 378
BstMBI	GATC	5 cut(s)	3, 7, 178, 354, 375
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	3 cut(s)	104, 225, 278
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	435, 529, 532
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	28, 584
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	449, 451
BtsIMutI	CAGTG	3 cut(s)	382, 492, 498
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	5 cut(s)	30, 101, 222, 275, 524
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	5 cut(s)	5, 9, 180, 356, 377
DpnII	GATC	5 cut(s)	3, 7, 178, 354, 375
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	5 cut(s)	33, 104, 225, 278, 527
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	29, 100, 221, 274, 523
FauNDI	CATATG	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	449, 518, 521
FokI	GGATG	2 cut(s)	438, 456
Fsp4HI	GCNGC	3 cut(s)	449, 518, 521
FspAI	RTGCGCAY	1 cut(s)	273
FspBI	CTAG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	449, 518, 521
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	28, 584
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	33, 104, 225, 278, 527
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HpaI	GTTAAC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	259, 333
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	2 cut(s)	334, 352
Hpy8I	GTNNAC	2 cut(s)	259, 333
HpyAV	CCTTC	5 cut(s)	59, 319, 465, 492, 595
HpyCH4III	ACNGT	3 cut(s)	158, 386, 502
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	5 cut(s)	104, 213, 278, 362, 451
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	33, 104, 225, 278, 527
HspAI	GCGC	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	3, 7, 178, 354, 375
LpnPI	CCDG	7 cut(s)	10, 37, 57, 222, 279, 426, 489
Lsp1109I	GCAGC	3 cut(s)	435, 529, 532
LweI	GCATC	3 cut(s)	151, 223, 460
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	5 cut(s)	5, 9, 180, 356, 377
MboI	GATC	5 cut(s)	3, 7, 178, 354, 375
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	3 cut(s)	123, 467, 547
MnlI	CCTC	6 cut(s)	107, 137, 236, 244, 247, 311
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	3 cut(s)	153, 258, 471
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	5 cut(s)	3, 7, 178, 354, 375
NlaIII	CATG	5 cut(s)	33, 104, 225, 278, 527
NmeAIII	GCCGAG	2 cut(s)	157, 331
NmuCI	GTSAC	1 cut(s)	296
NsbI	TGCGCA	1 cut(s)	273
NspI	RCATGY	3 cut(s)	104, 225, 278
PaeI	GCATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	384
PflMI	CCANNNNNTGG	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	450, 519, 522
Ppu21I	YACGTR	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	384
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	153, 258, 471
SatI	GCNGC	3 cut(s)	449, 518, 521
Sau3AI	GATC	5 cut(s)	3, 7, 178, 354, 375
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	25
SfaNI	GCATC	3 cut(s)	151, 223, 460
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	123, 467, 547
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	158, 386, 502
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	6, 228, 545
TasI	AATT	3 cut(s)	123, 467, 547
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	3 cut(s)	153, 258, 471
Tru9I	TTAA	3 cut(s)	153, 258, 471
TscAI	CASTG	3 cut(s)	389, 492, 505
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	448, 517, 520
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	540, 540
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	3 cut(s)	389, 492, 505
Tth111I	GACNNNGTC	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	3 cut(s)	104, 225, 278
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.