Rmu_sc0002573.1_g000019

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002573.1
Physical Location & Seq
Reverse (-)
88276 .. 90530
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002573.1_g000019.1.cds

Sequence Viewer

Length: 1404 bp
atgcaggccattcagtcctccacgctccgacccgccccgctcgacccgctccgcaaacggacccacttccccaacctcactcccaaacccgcctgcagacgcgtctccttcgtctccgccgccgcagccgtctccgcccccacccgcgagaaggaccccaagaagcgcgtggtcatcaccggcctcggcctcgtctccgtcttcggcaacgacgtcaacacctactacgacaagctgctcgccggagagagcggcgtcggacccatcgaccgcttcgacgcctccaagttccccacccggttcggcggccagatccgcggcttcacctcggagggctacattgacggcaagaacgatcgccgcctcgacgattgcctccgctacgccattgttgccggtaagaaggctctagaagatgctgatctcggcgccgataaccgccctaagcttgataagtcgcgggctggtgtgctagttggatcagggatgggtggtcttactgtgttttctgatggtgttcatgcactgatagataaaggtcacaggaaaattaccccatttttcattccctatgctattacaaacatgggatctgctttgcttgggattgatttgggctttatggggccgaattattcaatctcgactgcttgtgctacttcaaattactgtttctatgctgcggcgaatcacattcgtcggggtgaagctgatttgatgattgctggtgggactgaagctgccttgattcccattgggcttggggggtttgttgcatgcagggcattgtcccagagaaatgatgatccgaaaactgcttctaggccgtgggacaaagatagagatggctttgttatgggtgaaggtgctggaatattggtaatggagagcttggaacatgcgatgaaacgaggtgcacctattattgccgagtacttgggaggtgctattaactgtgatgcgtatcatatgactgatccaagaggcgatggacttggtgtatctacatgcatagagagaagccttgaagatgctggcgtgtcacctgaagaggttaactacatcaatgcccatgcaacttccactctagcgggtgacctggctgaggttaatgctataaagaaagtgttcaagaacactaaggagataaagatcaatgctactaagtctatgataggtcactgcctcggtgcttctgggggtttggaagctattgctacagtgaaagccatacaaacaggatggctacatccttccataaaccaatttaatccagaaccctcagtcgagtttgacaccgttgcaaatgtaaagcagcagcatgaagtgaatgttgccatatcaaattctttcggattcggaggacataactctgtggttgccttttctgcattcaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

49.72

Weight (kDa)

8.04

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 428
AccBSI CCGCTC 3 cut(s) 40, 49, 252
AccII CGCG 5 cut(s) 102, 147, 168, 318, 460
AclWI GGATC 5 cut(s) 307, 487, 598, 800, 971
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 1345
AcuI CTGAAG 2 cut(s) 756, 1068
AcyI GRCGYC 4 cut(s) 213, 255, 279, 429
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 2 cut(s) 151, 1105
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 5 cut(s) 639, 663, 1028, 1132, 1396
AjnI CCWGG 1 cut(s) 1098
AluBI AGCT 6 cut(s) 235, 448, 710, 740, 891, 1211
AluI AGCT 6 cut(s) 235, 448, 710, 740, 891, 1211
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 4 cut(s) 109, 118, 136, 199
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 5 cut(s) 307, 487, 598, 800, 971
AoxI GGCC 6 cut(s) 6, 181, 187, 307, 626, 824
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 6 cut(s) 125, 235, 680, 740, 1315, 1318
ApoI RAATTY 1 cut(s) 1345
Asp700I GAANNNNTTC 1 cut(s) 1127
AspLEI GCGC 2 cut(s) 168, 431
AspS9I GGNCC 4 cut(s) 60, 154, 260, 626
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 6 cut(s) 169, 316, 716, 872, 1035, 1106
AvaII GGWCC 3 cut(s) 60, 154, 260
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 919
BbvCI CCTCAGC 1 cut(s) 1104
BbvI GCAGC 6 cut(s) 137, 222, 667, 727, 1327, 1330
BccI CCATC 6 cut(s) 272, 481, 506, 839, 983, 1236
BceAI ACGGC 3 cut(s) 113, 361, 811
BciT130I CCWGG 1 cut(s) 1100
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 109, 118, 136, 199
BfaI CTAG 4 cut(s) 410, 473, 822, 1088
BfmI CTRYAG 2 cut(s) 94, 1218
BfoI RGCGCY 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 2 cut(s) 298, 1100
Bme18I GGWCC 3 cut(s) 60, 154, 260
BmgT120I GGNCC 4 cut(s) 60, 154, 260, 626
BmiI GGNNCC 5 cut(s) 62, 156, 262, 430, 627
BmrFI CCNGG 2 cut(s) 298, 1100
BmsI GCATC 3 cut(s) 406, 949, 1021
BpiI GAAGAC 1 cut(s) 193
Bpu10I CCTNAGC 2 cut(s) 444, 1104
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 3 cut(s) 420, 963, 1151
BsaHI GRCGYC 4 cut(s) 213, 255, 279, 429
BsaJI CCNNGG 5 cut(s) 184, 316, 327, 827, 1186
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 1105
Bse118I RCCGGY 2 cut(s) 179, 395
Bse8I GATNNNNATC 3 cut(s) 420, 963, 1151
BseBI CCWGG 1 cut(s) 1100
BseDI CCNNGG 5 cut(s) 184, 316, 327, 827, 1186
BseGI GGATG 3 cut(s) 492, 1247, 1249
BseJI GATNNNNATC 3 cut(s) 420, 963, 1151
BseLI CCNNNNNNNGG 2 cut(s) 151, 1105
BseMII CTCAG 2 cut(s) 1095, 1296
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 6 cut(s) 137, 222, 667, 727, 1327, 1330
Bsh1236I CGCG 5 cut(s) 102, 147, 168, 318, 460
Bsh1285I CGRYCG 2 cut(s) 271, 358
BshFI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 2 cut(s) 271, 358
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 4 cut(s) 180, 243, 298, 396
BslFI GGGAC 3 cut(s) 745, 775, 845
BslI CCNNNNNNNGG 2 cut(s) 151, 1105
BsmAI GTCTC 4 cut(s) 109, 118, 136, 199
BsmBI CGTCTC 4 cut(s) 109, 118, 136, 199
BsmFI GGGAC 3 cut(s) 745, 775, 845
BsmI GAATGC 1 cut(s) 1391
BsnI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
BspANI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BspCNI CTCAG 2 cut(s) 1096, 1295
BspFNI CGCG 5 cut(s) 102, 147, 168, 318, 460
BspLI GGNNCC 5 cut(s) 62, 156, 262, 430, 627
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 5 cut(s) 307, 487, 598, 800, 971
BspT107I GGYRCC 1 cut(s) 428
BsrBI CCGCTC 3 cut(s) 40, 49, 252
BsrFI RCCGGY 2 cut(s) 179, 395
BssAI RCCGGY 2 cut(s) 179, 395
BssECI CCNNGG 5 cut(s) 184, 316, 327, 827, 1186
BssMI GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
BssNI GRCGYC 4 cut(s) 213, 255, 279, 429
Bst2UI CCWGG 1 cut(s) 1100
Bst4CI ACNGT 5 cut(s) 502, 671, 956, 1222, 1300
Bst6I CTCTTC 1 cut(s) 1044
BstACI GRCGYC 4 cut(s) 213, 255, 279, 429
BstC8I GCNNGC 6 cut(s) 6, 94, 240, 462, 778, 1036
BstDEI CTNAG 5 cut(s) 444, 1104, 1140, 1164, 1282
BstDSI CCRYGG 2 cut(s) 316, 827
BstEII GGTNACC 1 cut(s) 1094
BstENI CCTNNNNNAGG 1 cut(s) 1103
BstF5I GGATG 3 cut(s) 492, 1247, 1249
BstFNI CGCG 5 cut(s) 102, 147, 168, 318, 460
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 2 cut(s) 168, 431
BstKTI GATC 8 cut(s) 315, 358, 424, 482, 593, 808, 979, 1155
BstMAI GTCTC 4 cut(s) 109, 118, 136, 199
BstMBI GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
BstMCI CGRYCG 2 cut(s) 271, 358
BstMWI GCNNNNNNNGC 7 cut(s) 46, 125, 134, 315, 392, 782, 1388
BstNI CCWGG 1 cut(s) 1100
BstNSI RCATGY 3 cut(s) 780, 902, 1011
BstPI GGTNACC 1 cut(s) 1094
BstSCI CCNGG 2 cut(s) 296, 1098
BstSFI CTRYAG 2 cut(s) 94, 1218
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 5 cut(s) 102, 147, 168, 318, 460
BstV1I GCAGC 6 cut(s) 137, 222, 667, 727, 1327, 1330
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 312, 590
BstYI RGATCY 2 cut(s) 312, 590
BsuRI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BtgI CCRYGG 2 cut(s) 316, 827
BtgZI GCGATG 2 cut(s) 917, 1002
BtsCI GGATG 3 cut(s) 492, 1247, 1249
BtsI GCAGTG 1 cut(s) 1180
BtsIMutI CAGTG 3 cut(s) 524, 1180, 1227
Cac8I GCNNGC 6 cut(s) 6, 94, 240, 462, 778, 1036
CfoI GCGC 2 cut(s) 168, 431
Cfr10I RCCGGY 2 cut(s) 179, 395
Cfr13I GGNCC 4 cut(s) 60, 154, 260, 626
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 4 cut(s) 91, 108, 244, 287
Csp6I GTAC 1 cut(s) 934
CviAII CATG 7 cut(s) 521, 586, 777, 899, 1008, 1073, 1322
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 5 cut(s) 444, 1104, 1140, 1164, 1282
DinI GGCGCC 1 cut(s) 430
DpnI GATC 8 cut(s) 314, 357, 423, 481, 592, 807, 978, 1154
DpnII GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
EciI GGCGGA 2 cut(s) 106, 124
Eco47I GGWCC 3 cut(s) 60, 154, 260
Eco57I CTGAAG 2 cut(s) 756, 1068
Eco91I GGTNACC 1 cut(s) 1094
EcoNI CCTNNNNNAGG 1 cut(s) 1103
EcoO109I RGGNCCY 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 1094
EcoRII CCWGG 1 cut(s) 1098
EcoT22I ATGCAT 1 cut(s) 1013
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
Esp3I CGTCTC 4 cut(s) 109, 118, 136, 199
FaeI CATG 7 cut(s) 524, 589, 780, 902, 1011, 1076, 1325
FaqI GGGAC 3 cut(s) 745, 775, 845
FatI CATG 7 cut(s) 520, 585, 776, 898, 1007, 1072, 1321
FauI CCCGC 7 cut(s) 40, 45, 54, 97, 152, 453, 1084
FauNDI CATATG 1 cut(s) 969
FokI GGATG 3 cut(s) 499, 1236, 1254
FspBI CTAG 4 cut(s) 410, 473, 822, 1088
GlaI GCGC 2 cut(s) 167, 430
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
HapII CCGG 4 cut(s) 180, 243, 298, 396
HgaI GACGC 4 cut(s) 91, 108, 244, 287
HhaI GCGC 2 cut(s) 168, 431
Hin1I GRCGYC 4 cut(s) 213, 255, 279, 429
Hin1II CATG 7 cut(s) 524, 589, 780, 902, 1011, 1076, 1325
Hin6I GCGC 2 cut(s) 166, 429
HinP1I GCGC 2 cut(s) 166, 429
HincII GTYRAC 2 cut(s) 217, 1057
HindII GTYRAC 2 cut(s) 217, 1057
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 688, 748, 1356
HpaI GTTAAC 1 cut(s) 1057
HpaII CCGG 4 cut(s) 180, 243, 298, 396
HphI GGTGA 6 cut(s) 169, 316, 716, 872, 1035, 1106
Hpy166II GTNNAC 3 cut(s) 217, 917, 1057
Hpy188I TCNGA 7 cut(s) 29, 260, 331, 511, 810, 1355, 1361
Hpy188III TCNNGA 4 cut(s) 410, 643, 1132, 1274
Hpy8I GTNNAC 3 cut(s) 217, 917, 1057
Hpy99I CGWCG 5 cut(s) 215, 260, 281, 371, 702
HpyAV CCTTC 5 cut(s) 118, 145, 397, 857, 1263
HpyCH4III ACNGT 5 cut(s) 502, 671, 956, 1222, 1300
HpyCH4IV ACGT 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 125, 134, 315, 392, 782, 1388
HpyF3I CTNAG 5 cut(s) 444, 1104, 1140, 1164, 1282
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 4 cut(s) 213, 255, 279, 429
Hsp92II CATG 7 cut(s) 524, 589, 780, 902, 1011, 1076, 1325
HspAI GCGC 2 cut(s) 166, 429
KasI GGCGCC 1 cut(s) 428
KspAI GTTAAC 1 cut(s) 1057
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
LmnI GCTCC 2 cut(s) 30, 54
Lsp1109I GCAGC 6 cut(s) 137, 222, 667, 727, 1327, 1330
LweI GCATC 3 cut(s) 406, 949, 1021
MaeI CTAG 4 cut(s) 410, 473, 822, 1088
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 539, 1041, 1094, 1178
MalI GATC 8 cut(s) 314, 357, 423, 481, 592, 807, 978, 1154
MbiI CCGCTC 3 cut(s) 40, 49, 252
MboI GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
MboII GAAGA 4 cut(s) 193, 425, 1040, 1061
MflI RGATCY 2 cut(s) 312, 590
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 5 cut(s) 549, 631, 664, 1265, 1345
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 429
MmeI TCCRAC 3 cut(s) 52, 238, 457
Mph1103I ATGCAT 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 4 cut(s) 951, 1056, 1110, 1269
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 4 cut(s) 180, 243, 298, 396
MspR9I CCNGG 2 cut(s) 298, 1100
Mva1269I GAATGC 1 cut(s) 1391
MvaI CCWGG 1 cut(s) 1100
MvnI CGCG 5 cut(s) 102, 147, 168, 318, 460
MwoI GCNNNNNNNGC 7 cut(s) 46, 125, 134, 315, 392, 782, 1388
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 969
NdeII GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
NlaIII CATG 7 cut(s) 524, 589, 780, 902, 1011, 1076, 1325
NlaIV GGNNCC 5 cut(s) 62, 156, 262, 430, 627
NmeAIII GCCGAG 3 cut(s) 165, 405, 955
NmuCI GTSAC 4 cut(s) 539, 1041, 1094, 1178
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 3 cut(s) 780, 902, 1011
PaeI GCATGC 1 cut(s) 780
PcsI WCGNNNNNNNCGW 4 cut(s) 210, 264, 273, 351
PctI GAATGC 1 cut(s) 1391
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 3 cut(s) 688, 748, 1356
Ple19I CGATCG 1 cut(s) 358
PluTI GGCGCC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 1098
PspEI GGTNACC 1 cut(s) 1094
PspGI CCWGG 1 cut(s) 1098
PspN4I GGNNCC 5 cut(s) 62, 156, 262, 430, 627
PspPI GGNCC 4 cut(s) 60, 154, 260, 626
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 312, 590
PvuI CGATCG 1 cut(s) 358
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
SacII CCGCGG 1 cut(s) 319
SaqAI TTAA 4 cut(s) 951, 1056, 1110, 1269
Sau3AI GATC 8 cut(s) 312, 355, 421, 479, 590, 805, 976, 1152
Sau96I GGNCC 4 cut(s) 60, 154, 260, 626
ScaI AGTACT 1 cut(s) 935
ScrFI CCNGG 2 cut(s) 298, 1100
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 3 cut(s) 406, 949, 1021
SfcI CTRYAG 2 cut(s) 94, 1218
SfoI GGCGCC 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 3 cut(s) 60, 154, 260
SphI GCATGC 1 cut(s) 780
Sse9I AATT 5 cut(s) 549, 631, 664, 1265, 1345
SspDI GGCGCC 1 cut(s) 428
SspI AATATT 1 cut(s) 876
SspMI CTAG 4 cut(s) 410, 473, 822, 1088
StyD4I CCNGG 2 cut(s) 296, 1098
TaaI ACNGT 5 cut(s) 502, 671, 956, 1222, 1300
TaiI ACGT 1 cut(s) 216
TaqI TCGA 6 cut(s) 42, 267, 276, 366, 644, 1287
TasI AATT 5 cut(s) 549, 631, 664, 1265, 1345
TatI WGTACW 1 cut(s) 933
TauI GCSGC 7 cut(s) 122, 125, 255, 309, 321, 363, 686
TfiI GAWTC 3 cut(s) 688, 748, 1356
Tru1I TTAA 4 cut(s) 951, 1056, 1110, 1269
Tru9I TTAA 4 cut(s) 951, 1056, 1110, 1269
TscAI CASTG 3 cut(s) 531, 1187, 1227
TseFI GTSAC 4 cut(s) 539, 1041, 1094, 1178
TseI GCWGC 6 cut(s) 125, 235, 680, 740, 1315, 1318
Tsp45I GTSAC 4 cut(s) 539, 1041, 1094, 1178
TspDTI ATGAA 4 cut(s) 509, 553, 920, 1338
TspGWI ACGGA 2 cut(s) 73, 187
TspRI CASTG 3 cut(s) 531, 1187, 1227
VneI GTGCAC 1 cut(s) 915
VpaK11BI GGWCC 3 cut(s) 60, 154, 260
XagI CCTNNNNNAGG 1 cut(s) 1103
XapI RAATTY 1 cut(s) 1345
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 3 cut(s) 780, 902, 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 4 cut(s) 410, 473, 822, 1088
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.