MD14G1131500.v1.1

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
20882611 .. 20886254
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1131500.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGGCTGGAATTGCTGGTCCTTGTTCTTCTGGTTTGCTGTTTAGATCAAGAGAAGCTGGGAGCATTAATGGAGCTTCCATGGCACAGTTTGATGGGCTTAGGCAAGTGGAGACCATGCATATGCCTGTAAATGGTAACAAGTCAAATGGCTTGGGTTTTACCTCAGCACCAAAATGCAGGATAATCAAGGCCATGGCATCTTCAACTGTTTCTGCTCCCAAAAGAGAAACAGATTCCAAGAAACGAACTGTAATAACAGGAATGGGTCTAGTCTCAGTTTTTGGAAGTGACATTGATACATTCTACAACAAACTCCTGGAGGGAGAGAGTGGGATCACTCTAATAGATAGGTTTGACGCTTCAACCTTCTCAGTTCGGTTCGCTGGACAGATACGTGATTTCTCCTCTAAAGGCTACATTGATGGGAAGAATGATCGCCGTCTAGATGATTGCTGGAGATACGGTATTGTTGCTGGCAAAAAGGCCCTTGAAGATGCCAACCTTGGACCTGAAGTTCTCCAAACTATGGATAGAACAAGGATCGGAGTGATTGTGGGGACTGGCATGGGAGGCTTAACAGCTTTCAGCGCTGGAGTTGAATCTCTTATTCAAAAGGGATACAAAAAGATTAGTCCATTTTTCATTCCTTACTCCATTACCAACATGGGGTCGGCTTTGTTAGCAATTGACACTGGCTTAATGGGACCCAACTACTCCATCTCCACTGCTTGTGCCACCGCAAATTACTGTTTTTACGCAGCTGCGAATCACATTAGAAGAGGTGAAGCAGATATTATGGTAGTTGGTGGAACTGAGGCTGCAGTCATGCCTACTGGTGTTGGTGGGTTTATTGCTTGCCGGGCTTTGTCTCAGAGAAACGATGAACCCCACAGAGCTTCCAGACCATGGGACAAAAATCGTGATGGTTTCGTTATGGGAGAAGGTGCTGGTGTACTGGTTATGGAGAGCTTGGAAAGTGCATTGAAAAGAGGAGCACCGATAATTGCAGAGTACTTAGGAGGTGCTGTGACATGCGATGCTCATCACATGACTGATCCTAGGTCAGATGGTCTTGGTGTATCGTCTTGCATAACCAAGAGTTTAGAAGATGCTGGAGTTTCCCCTGAAGAGGTGAACTATGTGAATGCTCATGCAACATCTACACTAGCAGGGGATTTGGCTGAGTTTAATGCAATCAAAAAGGTCTTTAAGGACACATCCGAGATGAAGATCAACGGGACCAAGTCAATGATCGGACATGGTCTTGGAGCTGCTGGGGGATTGGAAGCCATTGCAACCATTAAAGCAATCAACACTGGCTGGCTCCATCCTACAATTAATCAAGATGACTTGGAGCCTGCTGTTACAATTGACACTGTCCCGAATGTGAAGAAGCAACATGAGGTTAACGTTGCTATTTCAAATTCATTCGGCTTTGGCGGACACAACTCCGTGGTTGTCTTTGCCCCCTTCAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

52.12

Weight (kDa)

6.57

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 82 - 327 3.1e-54 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 336 - 448 1.8e-33 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 526, 906
AciI CCGC 2 cut(s) 738, 1440
AclI AACGTT 1 cut(s) 1410
AclWI GGATC 3 cut(s) 341, 548, 1049
AcsI RAATTY 1 cut(s) 1423
AcuI CTGAAG 3 cut(s) 531, 1146, 1456
AfaI GTAC 2 cut(s) 954, 1013
AfeI AGCGCT 1 cut(s) 589
AfiI CCNNNNNNNGG 5 cut(s) 131, 526, 666, 906, 1129
AgsI TTSAA 7 cut(s) 204, 363, 491, 599, 611, 985, 1422
AjnI CCWGG 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 7 cut(s) 56, 74, 581, 761, 896, 969, 1271
AluI AGCT 7 cut(s) 56, 74, 581, 761, 896, 969, 1271
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 3 cut(s) 104, 277, 873
AlwI GGATC 3 cut(s) 341, 548, 1049
Aor51HI AGCGCT 1 cut(s) 589
AoxI GGCC 2 cut(s) 189, 483
ApeKI GCWGC 4 cut(s) 758, 761, 818, 1271
ApoI RAATTY 1 cut(s) 1423
AseI ATTAAT 2 cut(s) 66, 1338
AspA2I CCTAGG 1 cut(s) 1058
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 5 cut(s) 17, 484, 506, 704, 1239
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 2 cut(s) 794, 1144
AvaII GGWCC 4 cut(s) 17, 506, 704, 1239
AvrII CCTAGG 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 997
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 4 cut(s) 748, 770, 805, 1258
BccI CCATC 6 cut(s) 86, 416, 725, 917, 1061, 1335
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 611
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 3 cut(s) 104, 277, 873
BfaI CTAG 4 cut(s) 269, 443, 1059, 1166
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 591
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 4 cut(s) 759, 762, 819, 1272
BlnI CCTAGG 1 cut(s) 1058
BlsI GCNGC 4 cut(s) 760, 763, 820, 1273
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 2 cut(s) 317, 860
Bme18I GGWCC 4 cut(s) 17, 506, 704, 1239
BmgT120I GGNCC 5 cut(s) 17, 484, 506, 704, 1239
BmiI GGNNCC 5 cut(s) 705, 706, 1240, 1325, 1356
BmrFI CCNGG 2 cut(s) 317, 860
BmsI GCATC 4 cut(s) 206, 484, 1027, 1099
BpmI CTGGAG 4 cut(s) 338, 475, 612, 1134
Bpu10I CCTNAGC 2 cut(s) 98, 163
BpuMI CCSGG 1 cut(s) 860
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 2 cut(s) 1041, 1229
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 6 cut(s) 78, 192, 502, 905, 1058, 1452
BsaXI ACNNNNNCTCC 8 cut(s) 448, 478, 537, 567, 704, 734, 1011, 1041
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 526, 666, 906, 1129
Bse1I ACTGG 5 cut(s) 565, 697, 838, 960, 1321
Bse3DI GCAATG 1 cut(s) 1290
Bse8I GATNNNNATC 2 cut(s) 1041, 1229
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 6 cut(s) 78, 192, 502, 905, 1058, 1452
BseGI GGATG 2 cut(s) 1217, 1327
BseJI GATNNNNATC 2 cut(s) 1041, 1229
BseLI CCNNNNNNNGG 5 cut(s) 131, 526, 666, 906, 1129
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 6 cut(s) 177, 288, 384, 804, 884, 1173
BseNI ACTGG 5 cut(s) 565, 697, 838, 960, 1321
BseRI GAGGAG 2 cut(s) 394, 1005
BseXI GCAGC 4 cut(s) 748, 770, 805, 1258
BseYI CCCAGC 2 cut(s) 56, 1274
BshFI GGCC 2 cut(s) 191, 485
BsiHKAI GWGCWC 1 cut(s) 997
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 6 cut(s) 571, 717, 923, 1252, 1364, 1461
BslI CCNNNNNNNGG 5 cut(s) 131, 526, 666, 906, 1129
BsmAI GTCTC 3 cut(s) 104, 277, 873
BsmFI GGGAC 6 cut(s) 571, 717, 923, 1252, 1364, 1461
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 2 cut(s) 191, 485
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 997
Bsp143I GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
Bsp19I CCATGG 3 cut(s) 78, 192, 905
BspACI CCGC 2 cut(s) 738, 1440
BspANI GGCC 2 cut(s) 191, 485
BspCNI CTCAG 6 cut(s) 176, 287, 383, 805, 883, 1174
BspLI GGNNCC 5 cut(s) 705, 706, 1240, 1325, 1356
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 3 cut(s) 341, 548, 1049
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 1290
BsrI ACTGG 5 cut(s) 565, 697, 838, 960, 1321
BssECI CCNNGG 6 cut(s) 78, 192, 502, 905, 1058, 1452
BssMI GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
BssT1I CCWWGG 5 cut(s) 78, 192, 502, 905, 1058
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 6 cut(s) 87, 208, 250, 464, 749, 1378
Bst6I CTCTTC 2 cut(s) 772, 1122
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 475, 856, 1322, 1359
BstDEI CTNAG 8 cut(s) 98, 163, 274, 370, 813, 870, 1015, 1182
BstDSI CCRYGG 4 cut(s) 78, 192, 905, 1452
BstF5I GGATG 2 cut(s) 1217, 1327
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 7 cut(s) 47, 336, 436, 543, 1057, 1233, 1254
BstMAI GTCTC 3 cut(s) 104, 277, 873
BstMBI GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
BstMWI GCNNNNNNNGC 6 cut(s) 11, 80, 570, 587, 680, 860
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 315, 858
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 748, 770, 805, 1258
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 191, 485
BtgI CCRYGG 4 cut(s) 78, 192, 905, 1452
BtgZI GCGATG 1 cut(s) 1050
BtsCI GGATG 2 cut(s) 1217, 1327
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 4 cut(s) 690, 723, 1314, 1374
Cac8I GCNNGC 4 cut(s) 475, 856, 1322, 1359
CfoI GCGC 1 cut(s) 590
Cfr13I GGNCC 5 cut(s) 17, 484, 506, 704, 1239
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 953, 1012
CviQI GTAC 2 cut(s) 953, 1012
DdeI CTNAG 8 cut(s) 98, 163, 274, 370, 813, 870, 1015, 1182
DpnI GATC 7 cut(s) 46, 335, 435, 542, 1056, 1232, 1253
DpnII GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
Eam1104I CTCTTC 2 cut(s) 772, 1122
EarI CTCTTC 2 cut(s) 772, 1122
EciI GGCGGA 1 cut(s) 1455
Eco130I CCWWGG 5 cut(s) 78, 192, 502, 905, 1058
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 4 cut(s) 17, 506, 704, 1239
Eco47III AGCGCT 1 cut(s) 589
Eco57I CTGAAG 3 cut(s) 531, 1146, 1456
EcoO109I RGGNCCY 2 cut(s) 484, 704
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 5 cut(s) 78, 192, 502, 905, 1058
EcoT22I ATGCAT 1 cut(s) 120
ErhI CCWWGG 5 cut(s) 78, 192, 502, 905, 1058
FaqI GGGAC 6 cut(s) 571, 717, 923, 1252, 1364, 1461
FauNDI CATATG 1 cut(s) 120
Fnu4HI GCNGC 4 cut(s) 759, 762, 819, 1272
FokI GGATG 2 cut(s) 1204, 1314
Fsp4HI GCNGC 4 cut(s) 759, 762, 819, 1272
FspBI CTAG 4 cut(s) 269, 443, 1059, 1166
GlaI GCGC 1 cut(s) 589
GluI GCNGC 4 cut(s) 759, 762, 819, 1272
GsaI CCCAGC 2 cut(s) 60, 1278
GsuI CTGGAG 4 cut(s) 338, 475, 612, 1134
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 2 cut(s) 191, 485
HapII CCGG 1 cut(s) 859
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 590
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 1 cut(s) 1408
HindII GTYRAC 1 cut(s) 1408
HinfI GANTC 3 cut(s) 233, 599, 766
HpaI GTTAAC 1 cut(s) 1408
HpaII CCGG 1 cut(s) 859
HphI GGTGA 2 cut(s) 794, 1144
Hpy166II GTNNAC 3 cut(s) 953, 1135, 1408
Hpy188I TCNGA 5 cut(s) 545, 873, 1066, 1222, 1256
Hpy188III TCNNGA 6 cut(s) 48, 443, 900, 920, 1343, 1381
Hpy8I GTNNAC 3 cut(s) 953, 1135, 1408
HpyAV CCTTC 3 cut(s) 376, 935, 1480
HpyCH4III ACNGT 6 cut(s) 87, 208, 250, 464, 749, 1378
HpyCH4IV ACGT 2 cut(s) 394, 1410
HpyCH4V TGCA 9 cut(s) 118, 177, 821, 980, 1007, 1089, 1154, 1193, 1295
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 80, 570, 587, 680, 860
HpyF3I CTNAG 8 cut(s) 98, 163, 274, 370, 813, 870, 1015, 1182
HpySE526I ACGT 2 cut(s) 394, 1410
HspAI GCGC 1 cut(s) 588
KflI GGGWCCC 1 cut(s) 704
KspAI GTTAAC 1 cut(s) 1408
Kzo9I GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
LmnI GCTCC 7 cut(s) 60, 71, 220, 992, 1268, 1329, 1354
Lsp1109I GCAGC 4 cut(s) 748, 770, 805, 1258
LweI GCATC 4 cut(s) 206, 484, 1027, 1099
MaeI CTAG 4 cut(s) 269, 443, 1059, 1166
MaeII ACGT 2 cut(s) 394, 1410
MaeIII GTNAC 4 cut(s) 134, 287, 1027, 1363
MalI GATC 7 cut(s) 46, 335, 435, 542, 1056, 1232, 1253
MboI GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
MboII GAAGA 9 cut(s) 18, 192, 439, 503, 789, 1118, 1139, 1240, 1402
MfeI CAATTG 2 cut(s) 684, 1368
MhlI GDGCHC 1 cut(s) 997
MluCI AATT 7 cut(s) 9, 684, 742, 1002, 1335, 1368, 1423
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 8 cut(s) 66, 575, 698, 1188, 1209, 1302, 1338, 1407
MslI CAYNNNNRTG 2 cut(s) 119, 172
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 1 cut(s) 859
MspR9I CCNGG 2 cut(s) 317, 860
MunI CAATTG 2 cut(s) 684, 1368
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 6 cut(s) 11, 80, 570, 587, 680, 860
NciI CCSGG 1 cut(s) 860
NcoI CCATGG 3 cut(s) 78, 192, 905
NdeI CATATG 1 cut(s) 120
NdeII GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
NlaIV GGNNCC 5 cut(s) 705, 706, 1240, 1325, 1356
NmuCI GTSAC 2 cut(s) 287, 1027
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 1 cut(s) 1035
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 3 cut(s) 233, 599, 766
PflFI GACNNNGTC 3 cut(s) 1243, 1260, 1376
PflMI CCANNNNNTGG 2 cut(s) 526, 906
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 4 cut(s) 760, 763, 820, 1273
Ppu21I YACGTR 1 cut(s) 395
PpuMI RGGWCCY 1 cut(s) 704
PshBI ATTAAT 2 cut(s) 66, 1338
Psp1406I AACGTT 1 cut(s) 1410
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 2 cut(s) 56, 1274
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 5 cut(s) 705, 706, 1240, 1325, 1356
PspPI GGNCC 5 cut(s) 17, 484, 506, 704, 1239
PspPPI RGGWCCY 1 cut(s) 704
PstI CTGCAG 1 cut(s) 823
PsyI GACNNNGTC 3 cut(s) 1243, 1260, 1376
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 2 cut(s) 954, 1013
RsaNI GTAC 2 cut(s) 953, 1012
RseI CAYNNNNRTG 2 cut(s) 119, 172
SaqAI TTAA 8 cut(s) 66, 575, 698, 1188, 1209, 1302, 1338, 1407
SatI GCNGC 4 cut(s) 759, 762, 819, 1272
Sau3AI GATC 7 cut(s) 44, 333, 433, 540, 1054, 1230, 1251
Sau96I GGNCC 5 cut(s) 17, 484, 506, 704, 1239
ScaI AGTACT 1 cut(s) 1013
ScrFI CCNGG 2 cut(s) 317, 860
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 4 cut(s) 206, 484, 1027, 1099
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 4 cut(s) 17, 506, 704, 1239
SmiMI CAYNNNNRTG 2 cut(s) 119, 172
Sse9I AATT 7 cut(s) 9, 684, 742, 1002, 1335, 1368, 1423
SsiI CCGC 2 cut(s) 738, 1440
SspMI CTAG 4 cut(s) 269, 443, 1059, 1166
StyD4I CCNGG 2 cut(s) 315, 858
StyI CCWWGG 5 cut(s) 78, 192, 502, 905, 1058
TaaI ACNGT 6 cut(s) 87, 208, 250, 464, 749, 1378
TaiI ACGT 2 cut(s) 397, 1413
TasI AATT 7 cut(s) 9, 684, 742, 1002, 1335, 1368, 1423
TatI WGTACW 2 cut(s) 952, 1011
TfiI GAWTC 3 cut(s) 233, 599, 766
Tru1I TTAA 8 cut(s) 66, 575, 698, 1188, 1209, 1302, 1338, 1407
Tru9I TTAA 8 cut(s) 66, 575, 698, 1188, 1209, 1302, 1338, 1407
TscAI CASTG 4 cut(s) 697, 730, 1321, 1381
TseFI GTSAC 2 cut(s) 287, 1027
TseI GCWGC 4 cut(s) 758, 761, 818, 1271
Tsp45I GTSAC 2 cut(s) 287, 1027
TspDTI ATGAA 4 cut(s) 631, 897, 1241, 1416
TspGWI ACGGA 1 cut(s) 1441
TspRI CASTG 4 cut(s) 697, 730, 1321, 1381
Tth111I GACNNNGTC 3 cut(s) 1243, 1260, 1376
Van91I CCANNNNNTGG 2 cut(s) 526, 906
VpaK11BI GGWCC 4 cut(s) 17, 506, 704, 1239
VspI ATTAAT 2 cut(s) 66, 1338
XapI RAATTY 1 cut(s) 1423
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 1 cut(s) 1035
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 1058
XspI CTAG 4 cut(s) 269, 443, 1059, 1166
ZrmI AGTACT 1 cut(s) 1013
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.