Rh5DG100500

Belongs to the beta-ketoacyl-ACP synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003245
Physical Location & Seq
Forward (+)
9197319 .. 9201374
4056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG100500.1

Sequence Viewer

Length: 1086 bp
ATGCAGGCCATTCAGTCCTCCACGCTCCGACCCGCCCCGCTCGACCCGCTCCGCAAACGGACCCACTTCCCCAACCTCACTCCCAAACCCGCCTGCAGACGCGTCTCCTTCGTCTCTGCCGCCGCTGCCGTCTCCGCCCCCACCCGCGAGAAGGACCCCAAGAAGCGCGTGGTCATCACCGGCCTCGGCCTCGTCTCCGTCTTCGGCAACGACGTCAACACCTACTACGACAAGCTCCTCGCCGGAGAGAGCGGCGTCGGACCCATCGACCGCTTCGACGCCTCCAAGTTCCCCACCCGGTTCGGCGGCCAGATCCGCGGCTTCACCTCGGAGGGCTACATTGACGGCAAGAACGATCGCCGCCTCGACGATTGCCTCCGCTACGCCATTGTTGCCGGTAAGAAGGCTCTAGAAGATGCTGATCTCGGCGCCGATAACCGCCCTAAGCTTGATAAGTCGCGGGCTGGTGTGCTAGTTGGATCAGGGATGGGTGGTCTTACTGTGTTTTCTGATGGTGTTCATGCACTGATAGATAAAGGTCACAGGAAAATTACCCCATTTTTCATTCCCTATGCTATTACAAACATGGGATCTGCTTTGCTTGGGATTGATTTGGGCTTTATGGGGCCGAATTATTCAATCTCGACTGCTTGTGCTACTTCAAATTACTGTTTCTATGCTGCGGCGAATCACATTCGTCGGGGTGAAGCTGATTTGATGATTGCTGGTGGGACTGAAGCTGCCTTGATTCCCATTGGGCTTGGGGGGTTTGTTGCATGCAGGGCATTGTCCCAGAGAAATGATGATCCGAAAACTGCTTCTAGGCCGTGGGACAAAGATAGAGATGGCTTTGTTATGGGTGAAGGTGCTGGAATATTGGTAATGGAGAGCTTGGAACATGCGATGAAACGAGGTGCACCTATTATTGCCGAGTACTTGGGAGGTGCTATTAACTGTGATGCGTATCATATGACTGATCCAAGAGGCGATGGACTTGGTGTATCTACATGCATAGAGAGAAGCCTTGAAGATGCTGGCGTGTCACCTGAAGAGGTGCCGTCTTCCTTAAACCTGTCTTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

361

Amino Acids

38.56

Weight (kDa)

7.59

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 55 - 301 1.4e-55 Beta-ketoacyl synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 428, 1054
AccBSI CCGCTC 3 cut(s) 40, 49, 252
AccII CGCG 5 cut(s) 102, 147, 168, 318, 460
AclWI GGATC 5 cut(s) 307, 487, 598, 800, 971
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 756, 1068
AcyI GRCGYC 4 cut(s) 213, 255, 279, 429
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 639, 663, 1028
AluBI AGCT 5 cut(s) 235, 448, 710, 740, 891
AluI AGCT 5 cut(s) 235, 448, 710, 740, 891
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 4 cut(s) 109, 118, 136, 199
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 5 cut(s) 307, 487, 598, 800, 971
AoxI GGCC 6 cut(s) 6, 181, 187, 307, 626, 824
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 3 cut(s) 125, 680, 740
AspLEI GCGC 2 cut(s) 168, 431
AspS9I GGNCC 4 cut(s) 60, 154, 260, 626
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 5 cut(s) 169, 316, 716, 872, 1035
AvaII GGWCC 3 cut(s) 60, 154, 260
BaeGI GKGCMC 1 cut(s) 919
BanI GGYRCC 2 cut(s) 428, 1054
BbsI GAAGAC 2 cut(s) 193, 1053
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 3 cut(s) 112, 667, 727
BccI CCATC 5 cut(s) 272, 481, 506, 839, 983
BceAI ACGGC 4 cut(s) 113, 361, 811, 1042
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 109, 118, 136, 199
BfaI CTAG 3 cut(s) 410, 473, 822
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 3 cut(s) 60, 154, 260
BmgT120I GGNCC 4 cut(s) 60, 154, 260, 626
BmiI GGNNCC 6 cut(s) 62, 156, 262, 430, 627, 1056
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 3 cut(s) 406, 949, 1021
BpiI GAAGAC 2 cut(s) 193, 1053
Bpu10I CCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 2 cut(s) 420, 963
BsaHI GRCGYC 4 cut(s) 213, 255, 279, 429
BsaJI CCNNGG 4 cut(s) 184, 316, 327, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 2 cut(s) 179, 395
Bse8I GATNNNNATC 2 cut(s) 420, 963
BseDI CCNNGG 4 cut(s) 184, 316, 327, 827
BseGI GGATG 1 cut(s) 492
BseJI GATNNNNATC 2 cut(s) 420, 963
BseLI CCNNNNNNNGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 3 cut(s) 112, 667, 727
Bsh1236I CGCG 5 cut(s) 102, 147, 168, 318, 460
Bsh1285I CGRYCG 2 cut(s) 271, 358
BshFI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BshNI GGYRCC 2 cut(s) 428, 1054
BsiEI CGRYCG 2 cut(s) 271, 358
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 4 cut(s) 180, 243, 298, 396
BslFI GGGAC 3 cut(s) 745, 775, 845
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 4 cut(s) 109, 118, 136, 199
BsmBI CGTCTC 4 cut(s) 109, 118, 136, 199
BsmFI GGGAC 3 cut(s) 745, 775, 845
BsnI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
BspANI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BspFNI CGCG 5 cut(s) 102, 147, 168, 318, 460
BspLI GGNNCC 6 cut(s) 62, 156, 262, 430, 627, 1056
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 5 cut(s) 307, 487, 598, 800, 971
BspT107I GGYRCC 2 cut(s) 428, 1054
BsrBI CCGCTC 3 cut(s) 40, 49, 252
BsrFI RCCGGY 2 cut(s) 179, 395
BssAI RCCGGY 2 cut(s) 179, 395
BssECI CCNNGG 4 cut(s) 184, 316, 327, 827
BssMI GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
BssNI GRCGYC 4 cut(s) 213, 255, 279, 429
Bst4CI ACNGT 3 cut(s) 502, 671, 956
Bst6I CTCTTC 1 cut(s) 1044
BstACI GRCGYC 4 cut(s) 213, 255, 279, 429
BstC8I GCNNGC 5 cut(s) 6, 94, 462, 778, 1036
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 2 cut(s) 316, 827
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 5 cut(s) 102, 147, 168, 318, 460
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 2 cut(s) 168, 431
BstKTI GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
BstMAI GTCTC 4 cut(s) 109, 118, 136, 199
BstMBI GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
BstMCI CGRYCG 2 cut(s) 271, 358
BstMWI GCNNNNNNNGC 6 cut(s) 46, 125, 134, 315, 392, 782
BstNSI RCATGY 3 cut(s) 780, 902, 1011
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 5 cut(s) 102, 147, 168, 318, 460
BstV1I GCAGC 3 cut(s) 112, 667, 727
BstV2I GAAGAC 2 cut(s) 193, 1053
BstX2I RGATCY 2 cut(s) 312, 590
BstYI RGATCY 2 cut(s) 312, 590
BsuRI GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
BtgI CCRYGG 2 cut(s) 316, 827
BtgZI GCGATG 2 cut(s) 917, 1002
BtsCI GGATG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 5 cut(s) 6, 94, 462, 778, 1036
CfoI GCGC 2 cut(s) 168, 431
Cfr10I RCCGGY 2 cut(s) 179, 395
Cfr13I GGNCC 4 cut(s) 60, 154, 260, 626
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 4 cut(s) 91, 108, 244, 287
Csp6I GTAC 1 cut(s) 934
CviAII CATG 5 cut(s) 521, 586, 777, 899, 1008
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 1 cut(s) 444
DinI GGCGCC 1 cut(s) 430
DpnI GATC 7 cut(s) 314, 357, 423, 481, 592, 807, 978
DpnII GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
EciI GGCGGA 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 60, 154, 260
Eco57I CTGAAG 2 cut(s) 756, 1068
EcoO109I RGGNCCY 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 1013
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
Esp3I CGTCTC 4 cut(s) 109, 118, 136, 199
FaeI CATG 5 cut(s) 524, 589, 780, 902, 1011
FaqI GGGAC 3 cut(s) 745, 775, 845
FatI CATG 5 cut(s) 520, 585, 776, 898, 1007
FauI CCCGC 6 cut(s) 40, 45, 54, 97, 152, 453
FauNDI CATATG 1 cut(s) 969
FokI GGATG 1 cut(s) 499
FspBI CTAG 3 cut(s) 410, 473, 822
GlaI GCGC 2 cut(s) 167, 430
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 6 cut(s) 8, 183, 189, 309, 628, 826
HapII CCGG 4 cut(s) 180, 243, 298, 396
HgaI GACGC 4 cut(s) 91, 108, 244, 287
HhaI GCGC 2 cut(s) 168, 431
Hin1I GRCGYC 4 cut(s) 213, 255, 279, 429
Hin1II CATG 5 cut(s) 524, 589, 780, 902, 1011
Hin6I GCGC 2 cut(s) 166, 429
HinP1I GCGC 2 cut(s) 166, 429
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 688, 748
HpaII CCGG 4 cut(s) 180, 243, 298, 396
HphI GGTGA 5 cut(s) 169, 316, 716, 872, 1035
Hpy166II GTNNAC 2 cut(s) 217, 917
Hpy188I TCNGA 6 cut(s) 29, 260, 331, 511, 810, 1085
Hpy188III TCNNGA 2 cut(s) 410, 643
Hpy8I GTNNAC 2 cut(s) 217, 917
Hpy99I CGWCG 5 cut(s) 215, 260, 281, 371, 702
HpyAV CCTTC 4 cut(s) 118, 145, 397, 857
HpyCH4III ACNGT 3 cut(s) 502, 671, 956
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 7 cut(s) 4, 96, 524, 776, 780, 917, 1011
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 125, 134, 315, 392, 782
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 4 cut(s) 213, 255, 279, 429
Hsp92II CATG 5 cut(s) 524, 589, 780, 902, 1011
HspAI GCGC 2 cut(s) 166, 429
KasI GGCGCC 1 cut(s) 428
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
LmnI GCTCC 3 cut(s) 30, 54, 240
Lsp1109I GCAGC 3 cut(s) 112, 667, 727
LweI GCATC 3 cut(s) 406, 949, 1021
MaeI CTAG 3 cut(s) 410, 473, 822
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 539, 1041
MalI GATC 7 cut(s) 314, 357, 423, 481, 592, 807, 978
MbiI CCGCTC 3 cut(s) 40, 49, 252
MboI GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
MboII GAAGA 5 cut(s) 193, 425, 1040, 1053, 1061
MflI RGATCY 2 cut(s) 312, 590
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 3 cut(s) 549, 631, 664
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 429
MmeI TCCRAC 3 cut(s) 52, 238, 457
Mph1103I ATGCAT 1 cut(s) 1013
MseI TTAA 2 cut(s) 951, 1067
MspA1I CMGCKG 2 cut(s) 125, 318
MspI CCGG 4 cut(s) 180, 243, 298, 396
MspR9I CCNGG 1 cut(s) 298
MvnI CGCG 5 cut(s) 102, 147, 168, 318, 460
MwoI GCNNNNNNNGC 6 cut(s) 46, 125, 134, 315, 392, 782
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 969
NdeII GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
NlaIII CATG 5 cut(s) 524, 589, 780, 902, 1011
NlaIV GGNNCC 6 cut(s) 62, 156, 262, 430, 627, 1056
NmeAIII GCCGAG 3 cut(s) 165, 405, 955
NmuCI GTSAC 2 cut(s) 539, 1041
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 3 cut(s) 780, 902, 1011
PaeI GCATGC 1 cut(s) 780
PcsI WCGNNNNNNNCGW 4 cut(s) 210, 264, 273, 351
PfeI GAWTC 2 cut(s) 688, 748
Ple19I CGATCG 1 cut(s) 358
PluTI GGCGCC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 6 cut(s) 62, 156, 262, 430, 627, 1056
PspPI GGNCC 4 cut(s) 60, 154, 260, 626
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 312, 590
PvuI CGATCG 1 cut(s) 358
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
SacII CCGCGG 1 cut(s) 319
SaqAI TTAA 2 cut(s) 951, 1067
Sau3AI GATC 7 cut(s) 312, 355, 421, 479, 590, 805, 976
Sau96I GGNCC 4 cut(s) 60, 154, 260, 626
ScaI AGTACT 1 cut(s) 935
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 3 cut(s) 406, 949, 1021
SfcI CTRYAG 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 3 cut(s) 60, 154, 260
SphI GCATGC 1 cut(s) 780
Sse9I AATT 3 cut(s) 549, 631, 664
SspDI GGCGCC 1 cut(s) 428
SspI AATATT 1 cut(s) 876
SspMI CTAG 3 cut(s) 410, 473, 822
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 502, 671, 956
TaiI ACGT 1 cut(s) 216
TaqI TCGA 5 cut(s) 42, 267, 276, 366, 644
TasI AATT 3 cut(s) 549, 631, 664
TatI WGTACW 1 cut(s) 933
TauI GCSGC 7 cut(s) 122, 125, 255, 309, 321, 363, 686
TfiI GAWTC 2 cut(s) 688, 748
Tru1I TTAA 2 cut(s) 951, 1067
Tru9I TTAA 2 cut(s) 951, 1067
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 539, 1041
TseI GCWGC 3 cut(s) 125, 680, 740
Tsp45I GTSAC 2 cut(s) 539, 1041
TspDTI ATGAA 3 cut(s) 509, 553, 920
TspGWI ACGGA 2 cut(s) 73, 187
TspRI CASTG 1 cut(s) 531
VneI GTGCAC 1 cut(s) 915
VpaK11BI GGWCC 3 cut(s) 60, 154, 260
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 3 cut(s) 780, 902, 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 3 cut(s) 410, 473, 822
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.