Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Forward (+)

15716364 .. 15721759

Gene Structure 5396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10380.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGTTAGCGACAGCGAGAGAGAGGATGATGGCTGGATGGAGAAAATTTTTATTGGGATTGGAATACGGATTCTACATTTGTTTTGGATTCTACATTACGTCATGGAGAGCTTGGAGAGTGCATTGAAAAGAGGAGCACCGATAATCGCAGAGTACTTGGGAGGTGCTGTGACTTGCGATGCTCATCACATGACTGATCCTAGGTCAGATGGTCTTGGTGTATCGTCTTGCATAACCAAGAGTTTAGAAGATGCTGGAGTTTCCCCTGAAGAGGTGAACTATGTGAATGCTCATGCAACATCTACACTAGCAGGGGATTTGGCTGAGTTTAATGCTATCAAAAAGGTCTTCAAGAACACGTCCGAGATGACGATCAACGGGACCAAGTCGATGATTGGACACGGTCTTGGAGCTTCCGGTGGATTGGAAGCCATTGCAACCATTAAAGCAATCAACACTGGCTGGCTCCATCCTACAATTAATCAAGATGACTTGGAGCCCGCTGTTACAATTGACACTGTCCCGAATGTGAAGAAGCAACATGAGGTTAACCTATTTCAAACTCATTCGGCTTTGGCGGACACAACTCTGTGGTTGTCTTTGCCCCTTTTAGTCCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

209

Amino Acids

22.52

Weight (kDa)

5.07

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	504, 581
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	3 cut(s)	130, 355, 563
AjiI	CACGTC	1 cut(s)	363
AluBI	AGCT	2 cut(s)	114, 416
AluI	AGCT	2 cut(s)	114, 416
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	483
AspA2I	CCTAGG	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	384
AvrII	CCTAGG	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	142
BccI	CCATC	4 cut(s)	26, 34, 206, 480
BfaI	CTAG	2 cut(s)	204, 311
BlnI	CCTAGG	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	3 cut(s)	385, 470, 501
BmsI	GCATC	2 cut(s)	172, 244
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	279
BsaBI	GATNNNNATC	2 cut(s)	186, 374
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	2 cut(s)	186, 374
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	34, 45, 472
BseJI	GATNNNNATC	2 cut(s)	186, 374
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	3 cut(s)	397, 509, 602
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	3 cut(s)	397, 509, 602
BsmI	GAATGC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	142, 504
Bsp143I	GATC	2 cut(s)	199, 375
BspACI	CCGC	2 cut(s)	504, 581
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	385, 470, 501
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	199, 375
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	407, 523
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	467, 504
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	34, 45, 472
BstKTI	GATC	2 cut(s)	202, 378
BstMBI	GATC	2 cut(s)	199, 375
BstV2I	GAAGAC	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	34, 45, 472
BtsIMutI	CAGTG	2 cut(s)	459, 519
Cac8I	GCNNGC	2 cut(s)	467, 504
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	106, 193, 296, 545
CviJI	RGCY	9 cut(s)	36, 114, 326, 416, 434, 465, 469, 502, 575
CviKI_1	RGCY	9 cut(s)	36, 114, 326, 416, 434, 465, 469, 502, 575
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	201, 377
DpnII	GATC	2 cut(s)	199, 375
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	109, 196, 299, 548
FaiI	YATR	6 cut(s)	107, 194, 236, 285, 297, 546
FaqI	GGGAC	3 cut(s)	397, 509, 602
FatI	CATG	4 cut(s)	105, 192, 295, 544
FauI	CCCGC	1 cut(s)	511
FokI	GGATG	3 cut(s)	41, 52, 459
FriOI	GRGCYC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	204, 311
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	4 cut(s)	109, 196, 299, 548
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	2 cut(s)	73, 91
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	280, 553
Hpy188I	TCNGA	2 cut(s)	211, 367
Hpy188III	TCNNGA	3 cut(s)	355, 488, 526
Hpy8I	GTNNAC	2 cut(s)	280, 553
HpyCH4III	ACNGT	2 cut(s)	407, 523
HpyCH4IV	ACGT	2 cut(s)	102, 362
HpyCH4V	TGCA	4 cut(s)	125, 234, 299, 440
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	102, 362
Hsp92II	CATG	4 cut(s)	109, 196, 299, 548
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	199, 375
LmnI	GCTCC	4 cut(s)	137, 413, 474, 499
LpnPI	CCDG	7 cut(s)	22, 243, 282, 300, 433, 447, 451
LweI	GCATC	2 cut(s)	172, 244
MaeI	CTAG	2 cut(s)	204, 311
MaeII	ACGT	2 cut(s)	102, 362
MaeIII	GTNAC	2 cut(s)	172, 508
MalI	GATC	2 cut(s)	201, 377
MboI	GATC	2 cut(s)	199, 375
MboII	GAAGA	4 cut(s)	263, 284, 343, 547
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	142, 504
MluCI	AATT	3 cut(s)	48, 480, 513
MnlI	CCTC	5 cut(s)	19, 128, 158, 268, 541
MseI	TTAA	4 cut(s)	333, 447, 483, 552
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	199, 375
NlaIII	CATG	4 cut(s)	109, 196, 299, 548
NlaIV	GGNNCC	3 cut(s)	385, 470, 501
NmuCI	GTSAC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	73, 91
PflFI	GACNNNGTC	3 cut(s)	388, 405, 521
PshBI	ATTAAT	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	385, 470, 501
PspPI	GGNCC	1 cut(s)	384
PsyI	GACNNNGTC	3 cut(s)	388, 405, 521
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	333, 447, 483, 552
Sau3AI	GATC	2 cut(s)	199, 375
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	142, 504
SfaNI	GCATC	2 cut(s)	172, 244
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	3 cut(s)	48, 480, 513
SsiI	CCGC	2 cut(s)	504, 581
SspMI	CTAG	2 cut(s)	204, 311
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	407, 523
TaiI	ACGT	2 cut(s)	105, 365
TaqI	TCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	48, 480, 513
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	73, 91
Tru1I	TTAA	4 cut(s)	333, 447, 483, 552
Tru9I	TTAA	4 cut(s)	333, 447, 483, 552
TscAI	CASTG	2 cut(s)	466, 526
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	2 cut(s)	466, 526
Tth111I	GACNNNGTC	3 cut(s)	388, 405, 521
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	204, 311
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.