Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Reverse (-)

27759329 .. 27760692

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCAGTCCCTCCAATCCTCCACTCTCCGGCCCGCTCCGCTCAGCCCGATTCGGAAACGGACCCCACATTTCCCCAATGTCACTACCAGAACAGCCAACTCCTCCAGGCGAATCTCATTCATATCCGCCTCCTCCGCCGTGTCCGCCCCTAAGCGCGAGATGGACCCGAAGAAGCGGGTTGTCATCACCGGAATGGGCCTCGTCTCCGTCTTCGGCAACGACGTCAATACTTACTACGACAAGCTCCTCGCCGGAGAGAGCGGTGTGGGTCCAATTGACCGGTTTGATGCGTCCAAGTTTCCGACCCGGTTCGGGGGCCAGATCCGCGGGTTCTCATCGGAGGGGTACATTGATGGGAAGAACGATCGACGGCTCGACGATTGCCTTCGGTACTCGATTGTTGCTGGGAAGAAAGCTCTCGAGGATGCTGATCTTGGCGCCGATCAGCGCTCAAAGCTTGATAAATCGCGGACTGGGGTGCTTGTTGGATCTGGAATGGGTGGTCTTACTGTCTTTTCTGATGGTGTTCATGCACTGATAGAGAAAGGTCACAGGAAAATTACCCCCTTTTTCATTCCTTATGCTATTACAAACATGGGGTCTGCGTTGCTTGCTATTGATCTGGGTTTTATGGGACCCAATTATTCCATTTCGACTGCTTGTGCTACTTCAAATTATTGCTTCTATGCTGCTGCAAATCACATTCGTCGGGGTGAAGCTGATTTGATGATTGCTGGCGGAACTGAAGCTGCCATAATTCCTGTTGGGGTGGGAGGGTTTGTTGCATGCAGGGCCTTGTCTCAGAGAATGGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

273

Amino Acids

29.09

Weight (kDa)

9.66

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	3 cut(s)	35, 40, 261
AccII	CGCG	3 cut(s)	156, 327, 469
AclWI	GGATC	2 cut(s)	316, 496
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	2 cut(s)	222, 438
AfaI	GTAC	2 cut(s)	347, 392
AfeI	AGCGCT	1 cut(s)	449
AfiI	CCNNNNNNNGG	3 cut(s)	27, 312, 313
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	5 cut(s)	244, 416, 457, 719, 749
AluI	AGCT	5 cut(s)	244, 416, 457, 719, 749
Alw26I	GTCTC	2 cut(s)	208, 804
AlwI	GGATC	2 cut(s)	316, 496
Ama87I	CYCGRG	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	449
AoxI	GGCC	4 cut(s)	29, 196, 316, 792
ApeKI	GCWGC	3 cut(s)	689, 692, 749
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AsiGI	ACCGGT	1 cut(s)	279
AspLEI	GCGC	3 cut(s)	156, 440, 450
AspS9I	GGNCC	8 cut(s)	30, 60, 163, 196, 269, 316, 635, 792
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	178, 725
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	4 cut(s)	60, 163, 269, 635
BanI	GGYRCC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	676, 679, 736
BccI	CCATC	3 cut(s)	154, 347, 515
BceAI	ACGGC	2 cut(s)	122, 386
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	208, 804
BfoI	RGCGCY	2 cut(s)	441, 451
BisI	GCNGC	3 cut(s)	690, 693, 750
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	3 cut(s)	691, 694, 751
Bme1390I	CCNGG	2 cut(s)	106, 307
Bme18I	GGWCC	4 cut(s)	60, 163, 269, 635
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	8 cut(s)	30, 60, 163, 196, 269, 316, 635, 792
BmiI	GGNNCC	7 cut(s)	62, 165, 270, 317, 439, 636, 637
BmrFI	CCNGG	2 cut(s)	106, 307
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	277, 415
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	222, 438
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	2 cut(s)	188, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 312, 313
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	27, 312, 313
BseMII	CTCAG	2 cut(s)	55, 815
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	3 cut(s)	91, 121, 236
BseXI	GCAGC	3 cut(s)	676, 679, 736
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	3 cut(s)	156, 327, 469
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	4 cut(s)	31, 198, 318, 794
BshNI	GGYRCC	1 cut(s)	437
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	5 cut(s)	28, 189, 252, 280, 307
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	3 cut(s)	27, 312, 313
BsmAI	GTCTC	2 cut(s)	208, 804
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	648
BsnI	GGCC	4 cut(s)	31, 198, 318, 794
BsoBI	CYCGRG	1 cut(s)	419
Bsp143I	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
Bsp1720I	GCTNAGC	1 cut(s)	41
BspANI	GGCC	4 cut(s)	31, 198, 318, 794
BspCNI	CTCAG	2 cut(s)	54, 814
BspFNI	CGCG	3 cut(s)	156, 327, 469
BspLI	GGNNCC	7 cut(s)	62, 165, 270, 317, 439, 636, 637
BspPI	GGATC	2 cut(s)	316, 496
BspT107I	GGYRCC	1 cut(s)	437
BsrBI	CCGCTC	3 cut(s)	35, 40, 261
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
BssNI	GRCGYC	2 cut(s)	222, 438
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	511
BstACI	GRCGYC	2 cut(s)	222, 438
BstC8I	GCNNGC	4 cut(s)	33, 612, 736, 787
BstDEI	CTNAG	3 cut(s)	41, 150, 801
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	3 cut(s)	156, 327, 469
BstH2I	RGCGCY	2 cut(s)	441, 451
BstHHI	GCGC	3 cut(s)	156, 440, 450
BstKTI	GATC	6 cut(s)	324, 367, 433, 445, 491, 622
BstMAI	GTCTC	2 cut(s)	208, 804
BstMBI	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 134, 143, 324, 454, 611, 791
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	104, 305
BstUI	CGCG	3 cut(s)	156, 327, 469
BstV1I	GCAGC	3 cut(s)	676, 679, 736
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	321, 488
BstYI	RGATCY	2 cut(s)	321, 488
BsuRI	GGCC	4 cut(s)	31, 198, 318, 794
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	4 cut(s)	33, 612, 736, 787
CfoI	GCGC	3 cut(s)	156, 440, 450
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	8 cut(s)	30, 60, 163, 196, 269, 316, 635, 792
Cfr42I	CCGCGG	1 cut(s)	328
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	346, 391
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	3 cut(s)	530, 595, 786
CviQI	GTAC	2 cut(s)	346, 391
DdeI	CTNAG	3 cut(s)	41, 150, 801
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	6 cut(s)	323, 366, 432, 444, 490, 621
DpnII	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
EciI	GGCGGA	4 cut(s)	115, 124, 133, 753
Eco47I	GGWCC	4 cut(s)	60, 163, 269, 635
Eco47III	AGCGCT	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	419
EcoO109I	RGGNCCY	2 cut(s)	635, 792
EcoRII	CCWGG	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	3 cut(s)	533, 598, 789
FaiI	YATR	9 cut(s)	122, 531, 582, 596, 632, 687, 755, 787, 817
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	3 cut(s)	529, 594, 785
FauI	CCCGC	3 cut(s)	40, 168, 320
Fnu4HI	GCNGC	3 cut(s)	690, 693, 750
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	690, 693, 750
GlaI	GCGC	3 cut(s)	155, 439, 449
GluI	GCNGC	3 cut(s)	690, 693, 750
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	88
HaeII	RGCGCY	2 cut(s)	441, 451
HaeIII	GGCC	4 cut(s)	31, 198, 318, 794
HapII	CCGG	5 cut(s)	28, 189, 252, 280, 307
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	3 cut(s)	156, 440, 450
Hin1I	GRCGYC	2 cut(s)	222, 438
Hin1II	CATG	3 cut(s)	533, 598, 789
Hin6I	GCGC	3 cut(s)	154, 438, 448
HinP1I	GCGC	3 cut(s)	154, 438, 448
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	2 cut(s)	49, 111
HpaII	CCGG	5 cut(s)	28, 189, 252, 280, 307
HphI	GGTGA	2 cut(s)	178, 725
Hpy188I	TCNGA	5 cut(s)	54, 303, 340, 520, 804
Hpy188III	TCNNGA	2 cut(s)	419, 492
Hpy99I	CGWCG	4 cut(s)	224, 372, 380, 711
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	4, 533, 695, 785, 789
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 134, 143, 324, 454, 611, 791
HpyF3I	CTNAG	3 cut(s)	41, 150, 801
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	2 cut(s)	222, 438
Hsp92II	CATG	3 cut(s)	533, 598, 789
HspAI	GCGC	3 cut(s)	154, 438, 448
KasI	GGCGCC	1 cut(s)	437
KflI	GGGWCCC	1 cut(s)	635
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
LmnI	GCTCC	2 cut(s)	40, 249
Lsp1109I	GCAGC	3 cut(s)	676, 679, 736
LweI	GCATC	2 cut(s)	277, 415
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	79, 548
MalI	GATC	6 cut(s)	323, 366, 432, 444, 490, 621
MbiI	CCGCTC	3 cut(s)	35, 40, 261
MboI	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
MboII	GAAGA	4 cut(s)	181, 202, 370, 421
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	321, 488
MluCI	AATT	5 cut(s)	273, 558, 640, 673, 756
Mly113I	GGCGCC	1 cut(s)	438
MmeI	TCCRAC	2 cut(s)	326, 466
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	5 cut(s)	28, 189, 252, 280, 307
MspR9I	CCNGG	2 cut(s)	106, 307
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	3 cut(s)	156, 327, 469
MwoI	GCNNNNNNNGC	7 cut(s)	37, 134, 143, 324, 454, 611, 791
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
NlaIII	CATG	3 cut(s)	533, 598, 789
NlaIV	GGNNCC	7 cut(s)	62, 165, 270, 317, 439, 636, 637
NmuCI	GTSAC	2 cut(s)	79, 548
NspI	RCATGY	1 cut(s)	789
PaeI	GCATGC	1 cut(s)	789
PaeR7I	CTCGAG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	49, 111
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	691, 694, 751
Ple19I	CGATCG	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	7 cut(s)	62, 165, 270, 317, 439, 636, 637
PspPI	GGNCC	8 cut(s)	30, 60, 163, 196, 269, 316, 635, 792
PspPPI	RGGWCCY	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	321, 488
PvuI	CGATCG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	347, 392
RsaNI	GTAC	2 cut(s)	346, 391
RseI	CAYNNNNRTG	1 cut(s)	191
SacII	CCGCGG	1 cut(s)	328
SatI	GCNGC	3 cut(s)	690, 693, 750
Sau3AI	GATC	6 cut(s)	321, 364, 430, 442, 488, 619
Sau96I	GGNCC	8 cut(s)	30, 60, 163, 196, 269, 316, 635, 792
ScrFI	CCNGG	2 cut(s)	106, 307
SetI	ASST	7 cut(s)	225, 246, 418, 459, 550, 721, 751
SfaNI	GCATC	2 cut(s)	277, 415
SfoI	GGCGCC	1 cut(s)	439
Sfr274I	CTCGAG	1 cut(s)	419
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SinI	GGWCC	4 cut(s)	60, 163, 269, 635
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	789
Sse9I	AATT	5 cut(s)	273, 558, 640, 673, 756
SspDI	GGCGCC	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	104, 305
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	5 cut(s)	367, 375, 395, 420, 653
TasI	AATT	5 cut(s)	273, 558, 640, 673, 756
TfiI	GAWTC	2 cut(s)	49, 111
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	79, 548
TseI	GCWGC	3 cut(s)	689, 692, 749
Tsp45I	GTSAC	2 cut(s)	79, 548
TspDTI	ATGAA	3 cut(s)	109, 518, 562
TspGWI	ACGGA	2 cut(s)	73, 196
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	4 cut(s)	60, 163, 269, 635
XceI	RCATGY	1 cut(s)	789
XhoI	CTCGAG	1 cut(s)	419
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.