Rh5BG102000

Belongs to the beta-ketoacyl-ACP synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003245
Physical Location & Seq
Forward (+)
9298690 .. 9302231
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG102000.1

Sequence Viewer

Length: 1089 bp
ATGCAGGCCATTCAGTCCTCCACGCTCCGACCCGCCCCGCTCGACCCGCTCCGCAAACGGACCCACTTCCCCAACCTCACTCCCAAACCCGCCTGCAGACGCGTCTCCTTCGTCTCCGCCTCCTCTGCCGCCGTCTCCGCCCCCACCCGCGAGAAGGACCCCAAGAAGCGCGTGGTCATCACCGGCCTCGGCCTCGTCTCCGTCTTCGGCAACGACGTCAACACCTACTACGACAAGCTCCTCGCCGGAGAGAGCGGCGTCGGACCCATCGACCGCTTCGACGCCTCCAAGTTCCCCACCCGGTTCGGCGGCCAGATCCGCGGCTTCACCTCCGAGGGCTACATTGACGGCAAGAACGATCGCCGCCTCGACGATTGCCTCCGCTACGCCATTGTTGCCGGCAAGAAGGCTCTAGAAGATGCTGATCTCGGCGCCGATAACCGCCCTAAGCTTGATAAGTCGCGGGCTGGTGTGCTAGTTGGATCAGGGATGGGTGGTCTTACTGTGTTTTCTGATGGTGTTCATGCACTGATAGATAAAGGTCACAGGAAAATTACCCCGTTTTTCATTCCCTATGCTATTACAAACATGGGATCTGCTTTGCTTGGAATTGATTTGGGCTTTATGGGGCCGAATTATTCAATCTCGACGGCTTGTGCTACTTCAAATTACTGTTTCTATGCTGCGGCGAATCACATTCGTCGGGGTGAAGCTGATTTGATGATTGCTGGTGGGACTGAAGCTGCCTTGATTCCCATTGGGCTTGGGGGGTTTGTTGCATGCAGGGCATTGTCTCAGAGAAATGATGATCCAAAAACTGCTTCTAGGCCGTGGGACAAAGATAGAGATGGCTTTGTTATGGGTGAAGGTGCTGGAATATTGGTAATGGAGAGCTTGGAACATGCGATGAAACGAGGTGCACCTATTATTGCCGAGTACTTGGGAGGTGCTATTAACTGTGATGCGTATCATATGACTGATCCAAGAGGCGATGGACTTGGTGTATCTACATGCATAGAGAGAAGCCTTGAAGATGCTGGTGTTTCACCTGAAGAGGTGCCGTCTTCCTTAAACCTGTCTTACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

362

Amino Acids

38.64

Weight (kDa)

7.59

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 56 - 302 1.5e-55 Beta-ketoacyl synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 2 cut(s) 431, 1057
AccBSI CCGCTC 3 cut(s) 40, 49, 255
AccII CGCG 5 cut(s) 102, 150, 171, 321, 463
AclWI GGATC 5 cut(s) 310, 490, 601, 803, 974
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 759, 1071
AcyI GRCGYC 4 cut(s) 216, 258, 282, 432
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 642, 666, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AluBI AGCT 5 cut(s) 238, 451, 713, 743, 894
AluI AGCT 5 cut(s) 238, 451, 713, 743, 894
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 5 cut(s) 109, 118, 139, 202, 798
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 5 cut(s) 310, 490, 601, 803, 974
AoxI GGCC 6 cut(s) 6, 184, 190, 310, 629, 827
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 2 cut(s) 683, 743
AspLEI GCGC 2 cut(s) 171, 434
AspS9I GGNCC 4 cut(s) 60, 157, 263, 629
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 5 cut(s) 172, 319, 719, 875, 1038
AvaII GGWCC 3 cut(s) 60, 157, 263
BaeGI GKGCMC 1 cut(s) 922
BanI GGYRCC 2 cut(s) 431, 1057
BbsI GAAGAC 2 cut(s) 196, 1056
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 2 cut(s) 670, 730
BccI CCATC 5 cut(s) 275, 484, 509, 842, 986
BceAI ACGGC 5 cut(s) 116, 364, 666, 814, 1045
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BfaI CTAG 3 cut(s) 413, 476, 825
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 435
BisI GCNGC 8 cut(s) 129, 256, 310, 322, 364, 684, 687, 744
BlsI GCNGC 8 cut(s) 130, 257, 311, 323, 365, 685, 688, 745
BmcAI AGTACT 1 cut(s) 938
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 3 cut(s) 60, 157, 263
BmgT120I GGNCC 4 cut(s) 60, 157, 263, 629
BmiI GGNNCC 6 cut(s) 62, 159, 265, 433, 630, 1059
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 409, 952, 1024
BpiI GAAGAC 2 cut(s) 196, 1056
Bpu10I CCTNAGC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 2 cut(s) 423, 966
BsaHI GRCGYC 4 cut(s) 216, 258, 282, 432
BsaJI CCNNGG 4 cut(s) 187, 319, 333, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 182, 398
Bse8I GATNNNNATC 2 cut(s) 423, 966
BseDI CCNNGG 4 cut(s) 187, 319, 333, 830
BseGI GGATG 1 cut(s) 495
BseJI GATNNNNATC 2 cut(s) 423, 966
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 809
BseRI GAGGAG 2 cut(s) 112, 230
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 2 cut(s) 670, 730
Bsh1236I CGCG 5 cut(s) 102, 150, 171, 321, 463
Bsh1285I CGRYCG 2 cut(s) 274, 361
BshFI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BshNI GGYRCC 2 cut(s) 431, 1057
BsiEI CGRYCG 2 cut(s) 274, 361
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 4 cut(s) 183, 246, 301, 399
BslFI GGGAC 2 cut(s) 748, 848
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BsmBI CGTCTC 4 cut(s) 109, 118, 139, 202
BsmFI GGGAC 2 cut(s) 748, 848
BsnI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
BspANI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BspCNI CTCAG 1 cut(s) 808
BspFNI CGCG 5 cut(s) 102, 150, 171, 321, 463
BspLI GGNNCC 6 cut(s) 62, 159, 265, 433, 630, 1059
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 5 cut(s) 310, 490, 601, 803, 974
BspT107I GGYRCC 2 cut(s) 431, 1057
BsrBI CCGCTC 3 cut(s) 40, 49, 255
BsrFI RCCGGY 2 cut(s) 182, 398
BssAI RCCGGY 2 cut(s) 182, 398
BssECI CCNNGG 4 cut(s) 187, 319, 333, 830
BssMI GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
BssNI GRCGYC 4 cut(s) 216, 258, 282, 432
Bst4CI ACNGT 3 cut(s) 505, 674, 959
Bst6I CTCTTC 1 cut(s) 1047
BstACI GRCGYC 4 cut(s) 216, 258, 282, 432
BstC8I GCNNGC 5 cut(s) 6, 94, 400, 465, 781
BstDEI CTNAG 2 cut(s) 447, 795
BstDSI CCRYGG 2 cut(s) 319, 830
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 5 cut(s) 102, 150, 171, 321, 463
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 171, 434
BstKTI GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
BstMAI GTCTC 5 cut(s) 109, 118, 139, 202, 798
BstMBI GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
BstMCI CGRYCG 2 cut(s) 274, 361
BstMWI GCNNNNNNNGC 6 cut(s) 46, 125, 137, 318, 395, 785
BstNSI RCATGY 3 cut(s) 783, 905, 1014
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 5 cut(s) 102, 150, 171, 321, 463
BstV1I GCAGC 2 cut(s) 670, 730
BstV2I GAAGAC 2 cut(s) 196, 1056
BstX2I RGATCY 2 cut(s) 315, 593
BstYI RGATCY 2 cut(s) 315, 593
BsuRI GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
BtgI CCRYGG 2 cut(s) 319, 830
BtgZI GCGATG 2 cut(s) 920, 1005
BtsCI GGATG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 5 cut(s) 6, 94, 400, 465, 781
CfoI GCGC 2 cut(s) 171, 434
Cfr10I RCCGGY 2 cut(s) 182, 398
Cfr13I GGNCC 4 cut(s) 60, 157, 263, 629
Cfr42I CCGCGG 1 cut(s) 322
CseI GACGC 4 cut(s) 91, 108, 247, 290
Csp6I GTAC 1 cut(s) 937
CviAII CATG 5 cut(s) 524, 589, 780, 902, 1011
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 2 cut(s) 447, 795
DinI GGCGCC 1 cut(s) 433
DpnI GATC 7 cut(s) 317, 360, 426, 484, 595, 810, 981
DpnII GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 1047
EarI CTCTTC 1 cut(s) 1047
EciI GGCGGA 2 cut(s) 106, 127
Eco47I GGWCC 3 cut(s) 60, 157, 263
Eco57I CTGAAG 2 cut(s) 759, 1071
EcoO109I RGGNCCY 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 1016
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
Esp3I CGTCTC 4 cut(s) 109, 118, 139, 202
FaeI CATG 5 cut(s) 527, 592, 783, 905, 1014
FaqI GGGAC 2 cut(s) 748, 848
FatI CATG 5 cut(s) 523, 588, 779, 901, 1010
FauI CCCGC 6 cut(s) 40, 45, 54, 97, 155, 456
FauNDI CATATG 1 cut(s) 972
Fnu4HI GCNGC 8 cut(s) 129, 256, 310, 322, 364, 684, 687, 744
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 8 cut(s) 129, 256, 310, 322, 364, 684, 687, 744
FspBI CTAG 3 cut(s) 413, 476, 825
GlaI GCGC 2 cut(s) 170, 433
GluI GCNGC 8 cut(s) 129, 256, 310, 322, 364, 684, 687, 744
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 6 cut(s) 8, 186, 192, 312, 631, 829
HapII CCGG 4 cut(s) 183, 246, 301, 399
HgaI GACGC 4 cut(s) 91, 108, 247, 290
HhaI GCGC 2 cut(s) 171, 434
Hin1I GRCGYC 4 cut(s) 216, 258, 282, 432
Hin1II CATG 5 cut(s) 527, 592, 783, 905, 1014
Hin6I GCGC 2 cut(s) 169, 432
HinP1I GCGC 2 cut(s) 169, 432
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 2 cut(s) 691, 751
HpaII CCGG 4 cut(s) 183, 246, 301, 399
HphI GGTGA 5 cut(s) 172, 319, 719, 875, 1038
Hpy166II GTNNAC 2 cut(s) 220, 920
Hpy188I TCNGA 6 cut(s) 29, 263, 334, 514, 798, 1088
Hpy188III TCNNGA 2 cut(s) 413, 646
Hpy8I GTNNAC 2 cut(s) 220, 920
Hpy99I CGWCG 6 cut(s) 218, 263, 284, 374, 652, 705
HpyAV CCTTC 4 cut(s) 118, 148, 400, 860
HpyCH4III ACNGT 3 cut(s) 505, 674, 959
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 7 cut(s) 4, 96, 527, 779, 783, 920, 1014
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 125, 137, 318, 395, 785
HpyF3I CTNAG 2 cut(s) 447, 795
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 4 cut(s) 216, 258, 282, 432
Hsp92II CATG 5 cut(s) 527, 592, 783, 905, 1014
HspAI GCGC 2 cut(s) 169, 432
KasI GGCGCC 1 cut(s) 431
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
KspI CCGCGG 1 cut(s) 322
Kzo9I GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
LmnI GCTCC 3 cut(s) 30, 54, 243
Lsp1109I GCAGC 2 cut(s) 670, 730
LweI GCATC 3 cut(s) 409, 952, 1024
MaeI CTAG 3 cut(s) 413, 476, 825
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 542
MalI GATC 7 cut(s) 317, 360, 426, 484, 595, 810, 981
MbiI CCGCTC 3 cut(s) 40, 49, 255
MboI GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
MboII GAAGA 5 cut(s) 196, 428, 1043, 1056, 1064
MflI RGATCY 2 cut(s) 315, 593
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 4 cut(s) 552, 609, 634, 667
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 432
MmeI TCCRAC 3 cut(s) 52, 241, 460
Mph1103I ATGCAT 1 cut(s) 1016
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 2 cut(s) 954, 1070
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 4 cut(s) 183, 246, 301, 399
MspR9I CCNGG 1 cut(s) 301
MvnI CGCG 5 cut(s) 102, 150, 171, 321, 463
MwoI GCNNNNNNNGC 6 cut(s) 46, 125, 137, 318, 395, 785
NaeI GCCGGC 1 cut(s) 400
NarI GGCGCC 1 cut(s) 432
NciI CCSGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 972
NdeII GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 5 cut(s) 527, 592, 783, 905, 1014
NlaIV GGNNCC 6 cut(s) 62, 159, 265, 433, 630, 1059
NmeAIII GCCGAG 3 cut(s) 168, 408, 958
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 1016
NspI RCATGY 3 cut(s) 783, 905, 1014
PaeI GCATGC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 4 cut(s) 213, 267, 276, 354
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 691, 751
PkrI GCNGC 8 cut(s) 130, 257, 311, 323, 365, 685, 688, 745
Ple19I CGATCG 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 6 cut(s) 62, 159, 265, 433, 630, 1059
PspPI GGNCC 4 cut(s) 60, 157, 263, 629
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 315, 593
PvuI CGATCG 1 cut(s) 361
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
SacII CCGCGG 1 cut(s) 322
SaqAI TTAA 2 cut(s) 954, 1070
SatI GCNGC 8 cut(s) 129, 256, 310, 322, 364, 684, 687, 744
Sau3AI GATC 7 cut(s) 315, 358, 424, 482, 593, 808, 979
Sau96I GGNCC 4 cut(s) 60, 157, 263, 629
ScaI AGTACT 1 cut(s) 938
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 3 cut(s) 409, 952, 1024
SfcI CTRYAG 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 433
Sfr303I CCGCGG 1 cut(s) 322
SgrBI CCGCGG 1 cut(s) 322
SinI GGWCC 3 cut(s) 60, 157, 263
SphI GCATGC 1 cut(s) 783
Sse9I AATT 4 cut(s) 552, 609, 634, 667
SspDI GGCGCC 1 cut(s) 431
SspI AATATT 1 cut(s) 879
SspMI CTAG 3 cut(s) 413, 476, 825
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 505, 674, 959
TaiI ACGT 1 cut(s) 219
TaqI TCGA 5 cut(s) 42, 270, 279, 369, 647
TasI AATT 4 cut(s) 552, 609, 634, 667
TatI WGTACW 1 cut(s) 936
TauI GCSGC 6 cut(s) 131, 258, 312, 324, 366, 689
TfiI GAWTC 2 cut(s) 691, 751
Tru1I TTAA 2 cut(s) 954, 1070
Tru9I TTAA 2 cut(s) 954, 1070
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 2 cut(s) 683, 743
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 512, 556, 923
TspGWI ACGGA 2 cut(s) 73, 190
TspRI CASTG 1 cut(s) 534
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 3 cut(s) 60, 157, 263
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 3 cut(s) 783, 905, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 3 cut(s) 413, 476, 825
ZraI GACGTC 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 938
Zsp2I ATGCAT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.