Rh5CG113800

Belongs to the beta-ketoacyl-ACP synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003245
Physical Location & Seq
Forward (+)
9300950 .. 9302452
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG113800.1

Sequence Viewer

Length: 1086 bp
ATGCAGGCCATTCAGTCCTCCACGCTCCGACCCGCCCCGCTCGACCCGCTCCGCAAAAGGACCCACTTCCCCAACCTCACTCCCAAACCCGCCTGCAGACGCGTCTCCTTCGTCTCCGCCTCCTCCGCCGCCGCCGTCTCCGCCCCCACCCGCGAGAAGGACCCCAAGAAGCGCGTGGTCATCACCGGCCTCGGCCTCGTCTCTGTCTTCGGAAACGACGTCAACACCTACTACGACAAGCTCCTCGCCGGAGAGAGCGGCGTCGGACCCATCGACCGCTTCGACGCCTCCAAGTTCCCCACCCGGTTCGGCGGCCAGATCCGCGGCTTCACCTCCGAGGGCTACATTGACGGCAAGAACGATCGCCGCCTCGACGATTGCCTCCGCTACGCCATTGTTGCCGGTAAGAAGGCTCTAGAAGATGCTGATCTCGGCGCCGATAACCGCCCTAAGCTTGATAAGTCGCGGGCTGGTGTGCTAGTTGGATCAGGGATGGGTGGTCTTACTGTGTTTTCTGATGGTGTTCATGCACTCATAGATAAAGGTCACAGGAAAATTACCCCATTTTTCATTCCCTATGCTATTACAAACATGGGATCTGCTTTGCTTGGGATTGATTTGGGCTTTATGGGGCCGAATTATTCAATCTCGACGGCTTGTGCTACTTCAAATTATTGTTTCTATGCTGCGGCGAATCACATTCGTCGGGGTGAAGCTGATTTGATGATTGCTGGTGGGACTGAAGCTGCCTTGATTCCCATTGGGCTTGGGGGGTTTGTTGCATGCAGGGCATTGTCTCAGAGAAATGATGATCCGAAAACTGCTTCTAGACCGTGGGACAAAGATAGAGATGGCTTTGTTATGGGTGAAGGTGCTGGAATATTGGTTATGGAGAGCTTGGAACATGCGATGAAACGAGGGGCACCTATTATTGCCGAGTACTTGGGAGGTGCTATTAACTGTGATGCATATCATATGACTGATCCAAGAGGTGATGGACTTGGTGTATCTACATGCATAGAGAGAAGCCTTGAAGATGCTGGTGTTTCACCTGAAGAGGTGCCGTCTTCCTTAAACCTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

361

Amino Acids

38.39

Weight (kDa)

7.59

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 57 - 303 1.4e-55 Beta-ketoacyl synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 3 cut(s) 434, 922, 1060
AccBSI CCGCTC 3 cut(s) 40, 49, 258
AccII CGCG 5 cut(s) 102, 153, 174, 324, 466
AclWI GGATC 5 cut(s) 313, 493, 604, 806, 977
AcoI YGGCCR 1 cut(s) 313
AcuI CTGAAG 2 cut(s) 762, 1074
AcyI GRCGYC 4 cut(s) 219, 261, 285, 435
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 645, 669, 1034
AjnI CCWGG 1 cut(s) 1077
AluBI AGCT 5 cut(s) 241, 454, 716, 746, 897
AluI AGCT 5 cut(s) 241, 454, 716, 746, 897
Alw26I GTCTC 5 cut(s) 109, 118, 142, 205, 801
AlwI GGATC 5 cut(s) 313, 493, 604, 806, 977
AoxI GGCC 5 cut(s) 6, 187, 193, 313, 632
ApeKI GCWGC 2 cut(s) 686, 746
AspLEI GCGC 2 cut(s) 174, 437
AspS9I GGNCC 4 cut(s) 60, 160, 266, 632
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 6 cut(s) 175, 322, 722, 878, 1004, 1041
AvaII GGWCC 3 cut(s) 60, 160, 266
BaeGI GKGCMC 1 cut(s) 925
BanI GGYRCC 3 cut(s) 434, 922, 1060
BbsI GAAGAC 2 cut(s) 199, 1059
BbvI GCAGC 2 cut(s) 673, 733
BccI CCATC 5 cut(s) 278, 487, 512, 845, 989
BceAI ACGGC 4 cut(s) 119, 367, 669, 1048
BciT130I CCWGG 1 cut(s) 1079
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 5 cut(s) 109, 118, 142, 205, 801
BfaI CTAG 3 cut(s) 416, 479, 828
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 438
BisI GCNGC 9 cut(s) 129, 132, 259, 313, 325, 367, 687, 690, 747
BlsI GCNGC 9 cut(s) 130, 133, 260, 314, 326, 368, 688, 691, 748
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 2 cut(s) 304, 1079
Bme18I GGWCC 3 cut(s) 60, 160, 266
BmgT120I GGNCC 4 cut(s) 60, 160, 266, 632
BmiI GGNNCC 7 cut(s) 62, 162, 268, 436, 633, 924, 1062
BmrFI CCNGG 2 cut(s) 304, 1079
BmsI GCATC 3 cut(s) 412, 955, 1027
BpiI GAAGAC 2 cut(s) 199, 1059
Bpu10I CCTNAGC 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 304
BsaBI GATNNNNATC 2 cut(s) 426, 969
BsaHI GRCGYC 4 cut(s) 219, 261, 285, 435
BsaJI CCNNGG 4 cut(s) 190, 322, 336, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 2 cut(s) 185, 401
Bse8I GATNNNNATC 2 cut(s) 426, 969
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 4 cut(s) 190, 322, 336, 833
BseGI GGATG 1 cut(s) 498
BseJI GATNNNNATC 2 cut(s) 426, 969
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 812
BseRI GAGGAG 2 cut(s) 112, 233
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 2 cut(s) 673, 733
Bsh1236I CGCG 5 cut(s) 102, 153, 174, 324, 466
Bsh1285I CGRYCG 2 cut(s) 277, 364
BshFI GGCC 5 cut(s) 8, 189, 195, 315, 634
BshNI GGYRCC 3 cut(s) 434, 922, 1060
BsiEI CGRYCG 2 cut(s) 277, 364
BsiSI CCGG 4 cut(s) 186, 249, 304, 402
BslFI GGGAC 2 cut(s) 751, 851
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 5 cut(s) 109, 118, 142, 205, 801
BsmBI CGTCTC 4 cut(s) 109, 118, 142, 205
BsmFI GGGAC 2 cut(s) 751, 851
BsnI GGCC 5 cut(s) 8, 189, 195, 315, 634
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
BspANI GGCC 5 cut(s) 8, 189, 195, 315, 634
BspCNI CTCAG 1 cut(s) 811
BspFNI CGCG 5 cut(s) 102, 153, 174, 324, 466
BspLI GGNNCC 7 cut(s) 62, 162, 268, 436, 633, 924, 1062
BspMAI CTGCAG 1 cut(s) 98
BspPI GGATC 5 cut(s) 313, 493, 604, 806, 977
BspT107I GGYRCC 3 cut(s) 434, 922, 1060
BsrBI CCGCTC 3 cut(s) 40, 49, 258
BsrFI RCCGGY 2 cut(s) 185, 401
BssAI RCCGGY 2 cut(s) 185, 401
BssECI CCNNGG 4 cut(s) 190, 322, 336, 833
BssMI GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
BssNI GRCGYC 4 cut(s) 219, 261, 285, 435
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 3 cut(s) 508, 834, 962
Bst6I CTCTTC 1 cut(s) 1050
BstACI GRCGYC 4 cut(s) 219, 261, 285, 435
BstC8I GCNNGC 4 cut(s) 6, 94, 468, 784
BstDEI CTNAG 3 cut(s) 450, 798, 1083
BstDSI CCRYGG 2 cut(s) 322, 833
BstF5I GGATG 1 cut(s) 498
BstFNI CGCG 5 cut(s) 102, 153, 174, 324, 466
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 174, 437
BstKTI GATC 7 cut(s) 321, 364, 430, 488, 599, 814, 985
BstMAI GTCTC 5 cut(s) 109, 118, 142, 205, 801
BstMBI GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
BstMCI CGRYCG 2 cut(s) 277, 364
BstMWI GCNNNNNNNGC 6 cut(s) 46, 125, 140, 321, 398, 788
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 3 cut(s) 786, 908, 1017
BstSCI CCNGG 2 cut(s) 302, 1077
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 5 cut(s) 102, 153, 174, 324, 466
BstV1I GCAGC 2 cut(s) 673, 733
BstV2I GAAGAC 2 cut(s) 199, 1059
BstX2I RGATCY 2 cut(s) 318, 596
BstYI RGATCY 2 cut(s) 318, 596
BsuRI GGCC 5 cut(s) 8, 189, 195, 315, 634
BtgI CCRYGG 2 cut(s) 322, 833
BtgZI GCGATG 1 cut(s) 923
BtsCI GGATG 1 cut(s) 498
Cac8I GCNNGC 4 cut(s) 6, 94, 468, 784
CfoI GCGC 2 cut(s) 174, 437
Cfr10I RCCGGY 2 cut(s) 185, 401
Cfr13I GGNCC 4 cut(s) 60, 160, 266, 632
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 4 cut(s) 91, 108, 250, 293
Csp6I GTAC 1 cut(s) 940
CviAII CATG 5 cut(s) 527, 592, 783, 905, 1014
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 3 cut(s) 450, 798, 1083
DinI GGCGCC 1 cut(s) 436
DpnI GATC 7 cut(s) 320, 363, 429, 487, 598, 813, 984
DpnII GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
EciI GGCGGA 3 cut(s) 106, 115, 130
Eco47I GGWCC 3 cut(s) 60, 160, 266
Eco57I CTGAAG 2 cut(s) 762, 1074
EcoO109I RGGNCCY 2 cut(s) 60, 160
EcoRII CCWGG 1 cut(s) 1077
EcoT22I ATGCAT 2 cut(s) 970, 1019
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
Esp3I CGTCTC 4 cut(s) 109, 118, 142, 205
FaeI CATG 5 cut(s) 530, 595, 786, 908, 1017
FaqI GGGAC 2 cut(s) 751, 851
FatI CATG 5 cut(s) 526, 591, 782, 904, 1013
FauI CCCGC 6 cut(s) 40, 45, 54, 97, 158, 459
FauNDI CATATG 1 cut(s) 975
Fnu4HI GCNGC 9 cut(s) 129, 132, 259, 313, 325, 367, 687, 690, 747
FokI GGATG 1 cut(s) 505
Fsp4HI GCNGC 9 cut(s) 129, 132, 259, 313, 325, 367, 687, 690, 747
FspBI CTAG 3 cut(s) 416, 479, 828
GlaI GCGC 2 cut(s) 173, 436
GluI GCNGC 9 cut(s) 129, 132, 259, 313, 325, 367, 687, 690, 747
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 5 cut(s) 8, 189, 195, 315, 634
HapII CCGG 4 cut(s) 186, 249, 304, 402
HgaI GACGC 4 cut(s) 91, 108, 250, 293
HhaI GCGC 2 cut(s) 174, 437
Hin1I GRCGYC 4 cut(s) 219, 261, 285, 435
Hin1II CATG 5 cut(s) 530, 595, 786, 908, 1017
Hin6I GCGC 2 cut(s) 172, 435
HinP1I GCGC 2 cut(s) 172, 435
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 2 cut(s) 694, 754
HpaII CCGG 4 cut(s) 186, 249, 304, 402
HphI GGTGA 6 cut(s) 175, 322, 722, 878, 1004, 1041
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 7 cut(s) 29, 212, 266, 337, 517, 801, 816
Hpy188III TCNNGA 3 cut(s) 416, 649, 828
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 6 cut(s) 221, 266, 287, 377, 655, 708
HpyAV CCTTC 4 cut(s) 118, 151, 403, 863
HpyCH4III ACNGT 3 cut(s) 508, 834, 962
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 4, 96, 530, 782, 786, 968, 1017
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 125, 140, 321, 398, 788
HpyF3I CTNAG 3 cut(s) 450, 798, 1083
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 4 cut(s) 219, 261, 285, 435
Hsp92II CATG 5 cut(s) 530, 595, 786, 908, 1017
HspAI GCGC 2 cut(s) 172, 435
KasI GGCGCC 1 cut(s) 434
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
LmnI GCTCC 3 cut(s) 30, 54, 246
Lsp1109I GCAGC 2 cut(s) 673, 733
LweI GCATC 3 cut(s) 412, 955, 1027
MaeI CTAG 3 cut(s) 416, 479, 828
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 545
MalI GATC 7 cut(s) 320, 363, 429, 487, 598, 813, 984
MbiI CCGCTC 3 cut(s) 40, 49, 258
MboI GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
MboII GAAGA 5 cut(s) 199, 431, 1046, 1059, 1067
MflI RGATCY 2 cut(s) 318, 596
MhlI GDGCHC 1 cut(s) 925
MluCI AATT 3 cut(s) 555, 637, 670
MluI ACGCGT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 435
MmeI TCCRAC 3 cut(s) 52, 244, 463
Mph1103I ATGCAT 2 cut(s) 970, 1019
MseI TTAA 2 cut(s) 957, 1073
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 4 cut(s) 186, 249, 304, 402
MspR9I CCNGG 2 cut(s) 304, 1079
MvaI CCWGG 1 cut(s) 1079
MvnI CGCG 5 cut(s) 102, 153, 174, 324, 466
MwoI GCNNNNNNNGC 6 cut(s) 46, 125, 140, 321, 398, 788
NarI GGCGCC 1 cut(s) 435
NciI CCSGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 975
NdeII GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
NlaIII CATG 5 cut(s) 530, 595, 786, 908, 1017
NlaIV GGNNCC 7 cut(s) 62, 162, 268, 436, 633, 924, 1062
NmeAIII GCCGAG 3 cut(s) 171, 411, 961
NmuCI GTSAC 1 cut(s) 545
NsiI ATGCAT 2 cut(s) 970, 1019
NspI RCATGY 3 cut(s) 786, 908, 1017
PaeI GCATGC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 4 cut(s) 216, 270, 279, 357
PfeI GAWTC 2 cut(s) 694, 754
PkrI GCNGC 9 cut(s) 130, 133, 260, 314, 326, 368, 688, 691, 748
Ple19I CGATCG 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 438
PpuMI RGGWCCY 2 cut(s) 60, 160
Psp5II RGGWCCY 2 cut(s) 60, 160
Psp6I CCWGG 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 7 cut(s) 62, 162, 268, 436, 633, 924, 1062
PspPI GGNCC 4 cut(s) 60, 160, 266, 632
PspPPI RGGWCCY 2 cut(s) 60, 160
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 318, 596
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
SacII CCGCGG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 957, 1073
SatI GCNGC 9 cut(s) 129, 132, 259, 313, 325, 367, 687, 690, 747
Sau3AI GATC 7 cut(s) 318, 361, 427, 485, 596, 811, 982
Sau96I GGNCC 4 cut(s) 60, 160, 266, 632
ScaI AGTACT 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 304, 1079
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 3 cut(s) 412, 955, 1027
SfcI CTRYAG 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 436
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 3 cut(s) 60, 160, 266
SphI GCATGC 1 cut(s) 786
Sse9I AATT 3 cut(s) 555, 637, 670
SspDI GGCGCC 1 cut(s) 434
SspI AATATT 1 cut(s) 882
SspMI CTAG 3 cut(s) 416, 479, 828
StyD4I CCNGG 2 cut(s) 302, 1077
TaaI ACNGT 3 cut(s) 508, 834, 962
TaiI ACGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 42, 273, 282, 372, 650
TasI AATT 3 cut(s) 555, 637, 670
TatI WGTACW 1 cut(s) 939
TauI GCSGC 7 cut(s) 131, 134, 261, 315, 327, 369, 692
TfiI GAWTC 2 cut(s) 694, 754
Tru1I TTAA 2 cut(s) 957, 1073
Tru9I TTAA 2 cut(s) 957, 1073
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 2 cut(s) 686, 746
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 515, 559, 926
VpaK11BI GGWCC 3 cut(s) 60, 160, 266
XbaI TCTAGA 2 cut(s) 415, 827
XceI RCATGY 3 cut(s) 786, 908, 1017
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 3 cut(s) 416, 479, 828
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 2 cut(s) 970, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.