RchiOBHm_Chr7g0186071

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
6060406 .. 6063857
3452 bp
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UTR
Exon/CDS
Intron
PRQ16610

Sequence Viewer

Length: 1485 bp
ATGGCTGCTGCTTCTTCTTGTTCTTCTGGTGTTCTGTTCGGATCAAGAGAGAATGGAGCTTTTCTGGCACAGTTTGATGGCCTTAGGCAAGTGGAGAAAATGCATATGCCTTTAGCTCCCACCAAGCCACAAGGGCGTGTTTCTACTTCAGCACCAAAATGTAGAACAATCAAGGCCATGGCATCCCCTGCTGTTTCTGCTCCCAAAAGAGAAACGGACCCCAAAAAAAGAACTGTAATAACAGGGCAGGGTCTAGTCTCAGTTTTTGGAAGTGACATTGATACTTTCTACAATAGACTCCTGGAGGGAGAGAGTGGAATCACTCTAATAGACAGATTTGATGCTTCAAGCTACTCAGTTAGATTCGCGGGACAGATTCGTGATTTCTCTTCTACAGGCTACATTGATGGGAAGAGTGATCGCCGTCTTGATGATTGCTGGAGATATGGTATGGTAGCCGGCAAAAAAGCCCTTGAAGATGCCAACCTTGGACCTGAAGCCCTTGAATCTTTGGACAAAACAAGGATTGGAGTGATAGTTGGGACAGGTATGGGAGGCTTAACAGCTTTCAGCGCCGGAGTGGAGTCTCTTGTTCAAAAGGGTTACAAGAAGATTAGTCCATTTTTCATTCCTTACTCCATTACCAACATGGGGTCAGCATTGTTAGCAATAGACACCGGGTTAATGGGACCAAATTACTCCATCTCTACCGCTTGTGCCACTGCAAATTACTGCTTCTATGCAGCTGCAAATCACATTAGAAGAGGTGAAGCAGATATCATGGTAGTTGGAGGGACTGAAGCTGCAGTCATGCCTGTAGGTGTTGGAGGTTTCATTGCTTGCCGGGCCTTGTCTCAGAGAAATGATGAACCCCACAGAGCTTCAAGACCATGGGACAAAAATCGTGATGGTTTCGTTATGGGAGAAGGCGCTGGTGTTCTGATTATGGAGAGCTTGGAGAGTGCATTGAAAAGAGGAGCACCTATAATTGCTGAGTACTTGGGAGGCGCTGTAACTTGTGATGCTCATCACATGACAGATCCCAGATCAGATGGACTTGGAGTGTCATCTTGCATAACCAAAAGTTTAGAAGATGCTGGGGTTTCCCCTGAAGAGGTGAACTATGTGAATGCTCATGCAACATCCACACTAGCAGGAGATTTGGCCGAGTTTAACGCCATCAAAAAGGTCTTTGGGAAGAACACATCCGAGATGAAGATCAATGGAACCAAGGAAAGGCACCCGAATTCCATGATTGGACATGGTCTTGGGGCTGCTGGTGGATTGGAAGCCATAGCAACCATCAAAGCAATCAACACTGGCTGGCTTCACCCAACAATTAATCAAGATGACTTGGAGCCTGCTGTTACAATTGACACCGTCCCAAACGTGAAGAAGAAGCATGAGGTTAATGTTGCCATCTCAAACTCATTCGGCTTTGGAGGGCACAATTCTGTGGTGGTCTTTGCCCCTTACAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

52.33

Weight (kDa)

6.84

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 77 - 322 1.8e-53 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 331 - 449 1.2e-30 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1239
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 368, 711
AclWI GGATC 2 cut(s) 49, 1034
AcoI YGGCCR 1 cut(s) 1164
AcsI RAATTY 1 cut(s) 1246
AcuI CTGAAG 4 cut(s) 132, 516, 819, 1131
AfaI GTAC 1 cut(s) 998
AfiI CCNNNNNNNGG 3 cut(s) 651, 1114, 1236
AgsI TTSAA 6 cut(s) 348, 476, 506, 596, 885, 970
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 8 cut(s) 59, 116, 351, 566, 746, 803, 881, 954
AluI AGCT 8 cut(s) 59, 116, 351, 566, 746, 803, 881, 954
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 3 cut(s) 262, 591, 858
AlwI GGATC 2 cut(s) 49, 1034
AoxI GGCC 4 cut(s) 79, 174, 846, 1164
ApeKI GCWGC 6 cut(s) 5, 8, 743, 746, 803, 1274
ApoI RAATTY 1 cut(s) 1246
AseI ATTAAT 1 cut(s) 1341
AspLEI GCGC 3 cut(s) 575, 932, 1010
AspS9I GGNCC 4 cut(s) 217, 491, 689, 846
AsuC2I CCSGG 2 cut(s) 679, 845
AsuHPI GGTGA 3 cut(s) 779, 1129, 1322
AvaII GGWCC 3 cut(s) 217, 491, 689
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 1449
BanI GGYRCC 1 cut(s) 1239
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 4 cut(s) 733, 755, 790, 1261
BccI CCATC 8 cut(s) 71, 401, 710, 902, 1046, 1187, 1310, 1427
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 679, 845
BcoDI GTCTC 3 cut(s) 262, 591, 858
BfaI CTAG 2 cut(s) 254, 1151
BfmI CTRYAG 3 cut(s) 393, 804, 816
BfoI RGCGCY 3 cut(s) 576, 933, 1011
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 6 cut(s) 6, 9, 744, 747, 804, 1275
BlsI GCNGC 6 cut(s) 7, 10, 745, 748, 805, 1276
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 3 cut(s) 302, 679, 845
Bme18I GGWCC 3 cut(s) 217, 491, 689
BmgT120I GGNCC 4 cut(s) 217, 491, 689, 846
BmiI GGNNCC 5 cut(s) 219, 690, 1228, 1241, 1359
BmrFI CCNGG 3 cut(s) 302, 679, 845
BmsI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
BpmI CTGGAG 2 cut(s) 323, 460
BpuMI CCSGG 2 cut(s) 679, 845
BsaBI GATNNNNATC 2 cut(s) 1026, 1217
BsaJI CCNNGG 4 cut(s) 177, 487, 890, 1230
BsaXI ACNNNNNCTCC 6 cut(s) 433, 463, 522, 552, 996, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 651, 1114, 1236
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 1324
Bse21I CCTNAGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 834
Bse8I GATNNNNATC 2 cut(s) 1026, 1217
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 177, 487, 890, 1230
BseGI GGATG 3 cut(s) 182, 1142, 1205
BseJI GATNNNNATC 2 cut(s) 1026, 1217
BseLI CCNNNNNNNGG 3 cut(s) 651, 1114, 1236
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 4 cut(s) 273, 369, 869, 984
BseNI ACTGG 1 cut(s) 1324
BseRI GAGGAG 1 cut(s) 990
BseSI GKGCMC 1 cut(s) 1449
BseXI GCAGC 4 cut(s) 733, 755, 790, 1261
BseYI CCCAGC 1 cut(s) 1097
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 81, 176, 848, 1166
BshNI GGYRCC 1 cut(s) 1239
BsiHKAI GWGCWC 1 cut(s) 982
BsiSI CCGG 4 cut(s) 459, 576, 678, 844
BslFI GGGAC 6 cut(s) 384, 556, 702, 808, 908, 1367
BslI CCNNNNNNNGG 3 cut(s) 651, 1114, 1236
BsmAI GTCTC 3 cut(s) 262, 591, 858
BsmFI GGGAC 6 cut(s) 384, 556, 702, 808, 908, 1367
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 4 cut(s) 81, 176, 848, 1166
Bsp1286I GDGCHC 2 cut(s) 982, 1449
Bsp143I GATC 5 cut(s) 41, 418, 1039, 1046, 1218
Bsp19I CCATGG 2 cut(s) 177, 890
BspACI CCGC 2 cut(s) 368, 711
BspANI GGCC 4 cut(s) 81, 176, 848, 1166
BspCNI CTCAG 4 cut(s) 272, 368, 868, 985
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 5 cut(s) 219, 690, 1228, 1241, 1359
BspMAI CTGCAG 1 cut(s) 808
BspPI GGATC 2 cut(s) 49, 1034
BspT107I GGYRCC 1 cut(s) 1239
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 1 cut(s) 1324
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 4 cut(s) 177, 487, 890, 1230
BssMI GATC 5 cut(s) 41, 418, 1039, 1046, 1218
BssT1I CCWWGG 4 cut(s) 177, 487, 890, 1230
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 72, 235, 1381
Bst6I CTCTTC 4 cut(s) 394, 407, 757, 1107
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 4 cut(s) 460, 841, 1325, 1362
BstDEI CTNAG 5 cut(s) 83, 259, 355, 855, 993
BstDSI CCRYGG 2 cut(s) 177, 890
BstF5I GGATG 3 cut(s) 182, 1142, 1205
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 3 cut(s) 576, 933, 1011
BstHHI GCGC 3 cut(s) 575, 932, 1010
BstKTI GATC 5 cut(s) 44, 421, 1042, 1049, 1221
BstMAI GTCTC 3 cut(s) 262, 591, 858
BstMBI GATC 5 cut(s) 41, 418, 1039, 1046, 1218
BstMWI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 300, 677, 843
BstSFI CTRYAG 3 cut(s) 393, 804, 816
BstSLI GKGCMC 1 cut(s) 1449
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 4 cut(s) 733, 755, 790, 1261
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 4 cut(s) 81, 176, 848, 1166
BtgI CCRYGG 2 cut(s) 177, 890
BtsCI GGATG 3 cut(s) 182, 1142, 1205
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 2 cut(s) 720, 1317
Cac8I GCNNGC 4 cut(s) 460, 841, 1325, 1362
CfoI GCGC 3 cut(s) 575, 932, 1010
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 4 cut(s) 217, 491, 689, 846
Csp6I GTAC 1 cut(s) 997
CviQI GTAC 1 cut(s) 997
DdeI CTNAG 5 cut(s) 83, 259, 355, 855, 993
DpnI GATC 5 cut(s) 43, 420, 1041, 1048, 1220
DpnII GATC 5 cut(s) 41, 418, 1039, 1046, 1218
EaeI YGGCCR 1 cut(s) 1164
Eam1104I CTCTTC 4 cut(s) 394, 407, 757, 1107
EarI CTCTTC 4 cut(s) 394, 407, 757, 1107
Eco130I CCWWGG 4 cut(s) 177, 487, 890, 1230
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 217, 491, 689
Eco57I CTGAAG 4 cut(s) 132, 516, 819, 1131
Eco81I CCTNAGG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 1246
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 4 cut(s) 177, 487, 890, 1230
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 4 cut(s) 177, 487, 890, 1230
FaqI GGGAC 6 cut(s) 384, 556, 702, 808, 908, 1367
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 6 cut(s) 6, 9, 744, 747, 804, 1275
FokI GGATG 3 cut(s) 169, 1129, 1192
Fsp4HI GCNGC 6 cut(s) 6, 9, 744, 747, 804, 1275
FspBI CTAG 2 cut(s) 254, 1151
GlaI GCGC 3 cut(s) 574, 931, 1009
GluI GCNGC 6 cut(s) 6, 9, 744, 747, 804, 1275
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 2 cut(s) 323, 460
HaeII RGCGCY 3 cut(s) 576, 933, 1011
HaeIII GGCC 4 cut(s) 81, 176, 848, 1166
HapII CCGG 4 cut(s) 459, 576, 678, 844
HhaI GCGC 3 cut(s) 575, 932, 1010
Hin6I GCGC 3 cut(s) 573, 930, 1008
HinP1I GCGC 3 cut(s) 573, 930, 1008
HinfI GANTC 6 cut(s) 297, 318, 363, 376, 506, 584
HpaII CCGG 4 cut(s) 459, 576, 678, 844
HphI GGTGA 3 cut(s) 779, 1129, 1322
Hpy166II GTNNAC 1 cut(s) 1120
Hpy188I TCNGA 5 cut(s) 41, 858, 942, 1051, 1210
Hpy188III TCNNGA 6 cut(s) 45, 380, 428, 885, 905, 1346
Hpy8I GTNNAC 1 cut(s) 1120
HpyAV CCTTC 1 cut(s) 920
HpyCH4III ACNGT 3 cut(s) 72, 235, 1381
HpyCH4IV ACGT 1 cut(s) 1389
HpyCH4V TGCA 8 cut(s) 103, 725, 743, 749, 806, 965, 1074, 1139
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
HpyF3I CTNAG 5 cut(s) 83, 259, 355, 855, 993
HpySE526I ACGT 1 cut(s) 1389
HspAI GCGC 3 cut(s) 573, 930, 1008
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 5 cut(s) 41, 418, 1039, 1046, 1218
LmnI GCTCC 5 cut(s) 56, 121, 205, 977, 1357
Lsp1109I GCAGC 4 cut(s) 733, 755, 790, 1261
LweI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
MaeI CTAG 2 cut(s) 254, 1151
MaeII ACGT 1 cut(s) 1389
MaeIII GTNAC 4 cut(s) 272, 602, 1012, 1366
MalI GATC 5 cut(s) 43, 420, 1041, 1048, 1220
MboI GATC 5 cut(s) 41, 418, 1039, 1046, 1218
MfeI CAATTG 1 cut(s) 1371
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 2 cut(s) 982, 1449
MluCI AATT 7 cut(s) 694, 727, 987, 1246, 1338, 1371, 1450
MlyI GAGTC 2 cut(s) 291, 593
MmeI TCCRAC 2 cut(s) 769, 805
Mph1103I ATGCAT 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 5 cut(s) 560, 683, 1173, 1341, 1410
MslI CAYNNNNRTG 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 4 cut(s) 459, 576, 678, 844
MspR9I CCNGG 3 cut(s) 302, 679, 845
MunI CAATTG 1 cut(s) 1371
Mva1269I GAATGC 1 cut(s) 1135
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 2 cut(s) 679, 845
NcoI CCATGG 2 cut(s) 177, 890
NdeI CATATG 1 cut(s) 105
NdeII GATC 5 cut(s) 41, 418, 1039, 1046, 1218
NgoMIV GCCGGC 1 cut(s) 458
NlaIV GGNNCC 5 cut(s) 219, 690, 1228, 1241, 1359
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 105
PctI GAATGC 1 cut(s) 1135
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 4 cut(s) 318, 363, 376, 506
PflFI GACNNNGTC 2 cut(s) 1263, 1379
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 6 cut(s) 7, 10, 745, 748, 805, 1276
PleI GAGTC 2 cut(s) 291, 592
PpsI GAGTC 2 cut(s) 291, 592
PshBI ATTAAT 1 cut(s) 1341
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 5 cut(s) 219, 690, 1228, 1241, 1359
PspPI GGNCC 4 cut(s) 217, 491, 689, 846
PstI CTGCAG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 1039
PsyI GACNNNGTC 2 cut(s) 1263, 1379
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 998
RsaNI GTAC 1 cut(s) 997
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 5 cut(s) 560, 683, 1173, 1341, 1410
SatI GCNGC 6 cut(s) 6, 9, 744, 747, 804, 1275
Sau3AI GATC 5 cut(s) 41, 418, 1039, 1046, 1218
Sau96I GGNCC 4 cut(s) 217, 491, 689, 846
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 2 cut(s) 291, 593
ScrFI CCNGG 3 cut(s) 302, 679, 845
SduI GDGCHC 2 cut(s) 982, 1449
SfaNI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
SfcI CTRYAG 3 cut(s) 393, 804, 816
SinI GGWCC 3 cut(s) 217, 491, 689
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 7 cut(s) 694, 727, 987, 1246, 1338, 1371, 1450
SsiI CCGC 2 cut(s) 368, 711
SspMI CTAG 2 cut(s) 254, 1151
StyD4I CCNGG 3 cut(s) 300, 677, 843
StyI CCWWGG 4 cut(s) 177, 487, 890, 1230
TaaI ACNGT 3 cut(s) 72, 235, 1381
TaiI ACGT 1 cut(s) 1392
TasI AATT 7 cut(s) 694, 727, 987, 1246, 1338, 1371, 1450
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 4 cut(s) 318, 363, 376, 506
Tru1I TTAA 5 cut(s) 560, 683, 1173, 1341, 1410
Tru9I TTAA 5 cut(s) 560, 683, 1173, 1341, 1410
TscAI CASTG 2 cut(s) 727, 1324
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 6 cut(s) 5, 8, 743, 746, 803, 1274
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 616, 823, 882, 1229
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 727, 1324
Tth111I GACNNNGTC 2 cut(s) 1263, 1379
VpaK11BI GGWCC 3 cut(s) 217, 491, 689
VspI ATTAAT 1 cut(s) 1341
XapI RAATTY 1 cut(s) 1246
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XspI CTAG 2 cut(s) 254, 1151
ZrmI AGTACT 1 cut(s) 998
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.