Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Forward (+)

15712846 .. 15715329

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACAGAACCAGGATTGGAGTGATCGTGGGAACTGGAATGGGAGGCTTAACAGCTTTCAGCGCCGGAGTTGAATCTCTTATTCAAAAGGGATTCAAAAAGATTAGCCCATTTTTCATTCCTTACTCCATTACCAACATGGGATCAGCATTGTTAGCAATCGACACAGGCTTAATGGGACCCAATTACTCCATCTCCACTGCTTGTGCCACAGCGAATTACTGCTTTTATGCAGCTGCAAATCACATTAGAAGAGGTGAAGCAGATATCATGGTAGTTGGTGGGACTGAGGCTGCAGTCATGCCTACTGGTGTTGGTGGGTTTATTGCTTGCCGGGCTTTGTCTCAGAGAAACGATGAACCTCACAGAGCTTCCAGACCATGGGACAAGAATCGTGATGGTTTCGTTATGGGAGAAGGCGCTGGTGTACTGGTCATGGAGAGCTTGGAGAGTGCATTGAAAAGAGGAGCACCGATAATCGCAGAGTACTTGGGAGGTGCTGTGACTTGCGATGCTCATCACATGACTGATCCTAGGTCAGATGGTCTTGGTGTATCGTCTTGCATAACCAAGAGTTTAGAAGATGCTGGAGTTTCCCCTGAAGAGGTGAACTATGTGAATGCTCATGCAACATCTACACTAGCAGGGGATTTGGCTGAGTTTAATGCTATCAAAAAGGTCTTCAAGAACACGTCCGAGATGATAGATCAACGGGACCAAGCTCAACTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

245

Amino Acids

25.77

Weight (kDa)

5.55

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AclWI	GGATC	2 cut(s)	151, 524
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	429, 488
AfiI	CCNNNNNNNGG	2 cut(s)	381, 604
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	5 cut(s)	74, 86, 97, 460, 685
AjiI	CACGTC	1 cut(s)	693
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	56, 236, 371, 444, 722
AluI	AGCT	5 cut(s)	56, 236, 371, 444, 722
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	151, 524
ApeKI	GCWGC	3 cut(s)	233, 236, 293
AspA2I	CCTAGG	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	65, 422
AspS9I	GGNCC	2 cut(s)	179, 715
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	269, 619
AvaII	GGWCC	2 cut(s)	179, 715
AvrII	CCTAGG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	223, 245, 280
BccI	CCATC	3 cut(s)	200, 392, 536
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	534, 641
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	2 cut(s)	66, 423
BisI	GCNGC	3 cut(s)	234, 237, 294
BlnI	CCTAGG	1 cut(s)	533
BlsI	GCNGC	3 cut(s)	235, 238, 295
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	13, 335
Bme18I	GGWCC	2 cut(s)	179, 715
BmgBI	CACGTC	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	179, 715
BmiI	GGNNCC	3 cut(s)	180, 181, 716
BmrFI	CCNGG	2 cut(s)	13, 335
BmsI	GCATC	2 cut(s)	502, 574
BpiI	GAAGAC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	609
BpuMI	CCSGG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	380, 533
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 179, 209, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 604
Bse1I	ACTGG	3 cut(s)	40, 313, 435
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	380, 533
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	2 cut(s)	381, 604
BseMII	CTCAG	3 cut(s)	279, 359, 648
BseNI	ACTGG	3 cut(s)	40, 313, 435
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	223, 245, 280
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	66, 334
BslFI	GGGAC	4 cut(s)	192, 298, 398, 728
BslI	CCNNNNNNNGG	2 cut(s)	381, 604
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	4 cut(s)	192, 298, 398, 728
BsmI	GAATGC	1 cut(s)	625
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	24, 143, 529, 706
Bsp19I	CCATGG	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	280, 358, 649
BspLI	GGNNCC	3 cut(s)	180, 181, 716
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	151, 524
BsrI	ACTGG	3 cut(s)	40, 313, 435
BssECI	CCNNGG	2 cut(s)	380, 533
BssMI	GATC	4 cut(s)	24, 143, 529, 706
BssT1I	CCWWGG	2 cut(s)	380, 533
Bst2UI	CCWGG	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	247, 597
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	3 cut(s)	288, 345, 657
BstDSI	CCRYGG	1 cut(s)	380
BstH2I	RGCGCY	2 cut(s)	66, 423
BstHHI	GCGC	2 cut(s)	65, 422
BstKTI	GATC	4 cut(s)	27, 146, 532, 709
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	4 cut(s)	24, 143, 529, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 155, 335
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 333
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	223, 245, 280
BstV2I	GAAGAC	1 cut(s)	673
BtgI	CCRYGG	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	693
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	2 cut(s)	65, 422
Cfr13I	GGNCC	2 cut(s)	179, 715
Csp6I	GTAC	2 cut(s)	428, 487
CviAII	CATG	7 cut(s)	139, 271, 301, 381, 436, 523, 626
CviQI	GTAC	2 cut(s)	428, 487
DdeI	CTNAG	3 cut(s)	288, 345, 657
DpnI	GATC	4 cut(s)	26, 145, 531, 708
DpnII	GATC	4 cut(s)	24, 143, 529, 706
Eam1104I	CTCTTC	2 cut(s)	247, 597
EarI	CTCTTC	2 cut(s)	247, 597
Eco130I	CCWWGG	2 cut(s)	380, 533
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	179, 715
Eco57I	CTGAAG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	11
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	380, 533
ErhI	CCWWGG	2 cut(s)	380, 533
FaeI	CATG	7 cut(s)	142, 274, 304, 384, 439, 526, 629
FaqI	GGGAC	4 cut(s)	192, 298, 398, 728
FatI	CATG	7 cut(s)	138, 270, 300, 380, 435, 522, 625
Fnu4HI	GCNGC	3 cut(s)	234, 237, 294
Fsp4HI	GCNGC	3 cut(s)	234, 237, 294
FspBI	CTAG	2 cut(s)	534, 641
GlaI	GCGC	2 cut(s)	64, 421
GluI	GCNGC	3 cut(s)	234, 237, 294
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	2 cut(s)	66, 423
HapII	CCGG	2 cut(s)	66, 334
HhaI	GCGC	2 cut(s)	65, 422
Hin1II	CATG	7 cut(s)	142, 274, 304, 384, 439, 526, 629
Hin6I	GCGC	2 cut(s)	63, 420
HinP1I	GCGC	2 cut(s)	63, 420
HinfI	GANTC	3 cut(s)	74, 93, 391
HpaII	CCGG	2 cut(s)	66, 334
HphI	GGTGA	2 cut(s)	269, 619
Hpy166II	GTNNAC	2 cut(s)	428, 610
Hpy188I	TCNGA	3 cut(s)	348, 541, 697
Hpy188III	TCNNGA	3 cut(s)	375, 395, 685
Hpy8I	GTNNAC	2 cut(s)	428, 610
HpyAV	CCTTC	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	6 cut(s)	233, 239, 296, 455, 564, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 155, 335
HpyF3I	CTNAG	3 cut(s)	288, 345, 657
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	7 cut(s)	142, 274, 304, 384, 439, 526, 629
HspAI	GCGC	2 cut(s)	63, 420
KflI	GGGWCCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	24, 143, 529, 706
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	3 cut(s)	223, 245, 280
LweI	GCATC	2 cut(s)	502, 574
MaeI	CTAG	2 cut(s)	534, 641
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	4 cut(s)	26, 145, 531, 708
MboI	GATC	4 cut(s)	24, 143, 529, 706
MboII	GAAGA	4 cut(s)	264, 593, 614, 673
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	184, 217, 730
MnlI	CCTC	7 cut(s)	38, 248, 283, 372, 458, 488, 598
MseI	TTAA	4 cut(s)	50, 173, 663, 733
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	66, 334
MspR9I	CCNGG	2 cut(s)	13, 335
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	62, 155, 335
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	24, 143, 529, 706
NlaIII	CATG	7 cut(s)	142, 274, 304, 384, 439, 526, 629
NlaIV	GGNNCC	3 cut(s)	180, 181, 716
NmuCI	GTSAC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	74, 93, 391
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	3 cut(s)	235, 238, 295
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	180, 181, 716
PspPI	GGNCC	2 cut(s)	179, 715
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	429, 488
RsaNI	GTAC	2 cut(s)	428, 487
SaqAI	TTAA	4 cut(s)	50, 173, 663, 733
SatI	GCNGC	3 cut(s)	234, 237, 294
Sau3AI	GATC	4 cut(s)	24, 143, 529, 706
Sau96I	GGNCC	2 cut(s)	179, 715
ScaI	AGTACT	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	13, 335
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	502, 574
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	179, 715
Sse9I	AATT	3 cut(s)	184, 217, 730
SspMI	CTAG	2 cut(s)	534, 641
StyD4I	CCNGG	2 cut(s)	11, 333
StyI	CCWWGG	2 cut(s)	380, 533
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	184, 217, 730
TatI	WGTACW	2 cut(s)	427, 486
TfiI	GAWTC	3 cut(s)	74, 93, 391
Tru1I	TTAA	4 cut(s)	50, 173, 663, 733
Tru9I	TTAA	4 cut(s)	50, 173, 663, 733
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	233, 236, 293
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	106, 372
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	179, 715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	533
XspI	CTAG	2 cut(s)	534, 641
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.