Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003245

Physical Location & Seq

Genomic Coordinates Forward (+)

6230790 .. 6234506

Gene Structure 3717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTGCTGCTTCTTCTTGTTCTTCTGGTGTTCTGTTCGGATCAAGAGAGAATGGAGCTTTTCTGGCACAGTTTGATGGCCTTAGGCAAGTGGAGAAAATGCATATGCCTTTAGCTCCCACCAAGCCACAAGGGCGTGTTTCTACTTCAGCACCAAAATGTAGAACAATCAAGGCCATGGCATCCCCTGCTGTTTCTGCTCCCAAAAGAGAAACGGACCCCAAAAAAAGAACTGTAATAACAGGGCAGGGTCTAGTCTCAGTTTTTGGAAGTGACATTGATACTTTCTACAATAGACTCCTGGAGGGAGAGAGTGGAATCACTCTAATAGACAGATTTGATGCTTCAAGCTACTCAGTTAGATTCGCGGGACAGATTCGTGATTTCTCTTCTACAGGCTACATTGATGGGAAGAGTGATCGCCGTCTTGATGATTGCTGGAGATATGGTATGGTAGCCGGCAAAAAAGCCCTTGAAGATGCCAACCTTGGACCTGAAGCCCTTGAATCTTTGGACAAAACAAGGATTGGAGTGATAGTTGGGACAGGTATGGGAGGCTTAACAGCTTTCAGCGCCGGAGTGGAGTCTCTTGTTCAAAAGGGTTACAAGAAGATTAGTCCATTTTTCATTCCTTACTCCATTACCAACATGGGGTCAGCATTGTTAGCAATAGACACCGGGTTAATGGGACCAAATTACTCCATCTCTACCGCTTGTGCCACTGCAAATTACTGCTTCTATGCAGCTGCAAATCACATTAGAAGAGGTGAAGCAGATATCATGGTAGTTGGAGGGACTGAAGCTGCAGTCATGCCTGTAGGTGTTGGAGGTTTCATTGCTTGCCGGGCCTTGTCTCAGAGAAATGATGAACCCCACAGAGCTTCAAGACCATGGGACAAAAATCGTGATGGTTTCGTTATGGGAGAAGGCGCTGGTGTTCTGATTATGGAGAGCTTGGAGAGTGCATTGAAAAGAGGAGCACCTATAATTGCTGAGTACTTGGGAGGCGCTGTAACTTGTGATGCTCATCACATGACAGATCCCAGATCAGATGGACTTGGAGTGTCATCTTGCATAACCAAAAGTTTAGAAGATGCTGGGGTTTCCCCTGAAGAGGTGAACTATGTGAATGCTCATGCAACATCCACACTAGCAGGAGATTTGGCCGAGTTTAACGCCATCAAAAAGGTCTTTGGGAAGAACACATCCGAGATGAAGATCAATGGAACCAAGGAAAGGCACCCGAATGTCATTCACATATTTACTCTTAAAAGGATTTGTTTCTATTTGAAAATAGTAGTATACATGAACACTAATTTTTTACACTTAAAAACTGAGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

448

Amino Acids

48.1

Weight (kDa)

8.46

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	77 - 322	1.4e-53	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	331 - 412	2.4e-20	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46290 AT5G46290 AT5G46290
fragaria_vesca	FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700
malus_domestica	MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1
prunus_persica	Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1
pyrus_communis	pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030
rosa_chinensis	RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071
rosa_laevigata	RLG00000004868 RLG00000032029
rosa_multiflora	Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063000 Rroxscaffold_3G00268460
rosa_rugosa	Rorug05G0011100 Rorug06G0472000
rosa_samantha	Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400
rosa_wichuraiana	Rw5G009210 Rw7G006520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1239
AccI	GTMKAC	1 cut(s)	1302
AccII	CGCG	1 cut(s)	368
AciI	CCGC	2 cut(s)	368, 711
AclWI	GGATC	2 cut(s)	49, 1034
AcoI	YGGCCR	1 cut(s)	1164
AcuI	CTGAAG	4 cut(s)	132, 516, 819, 1131
AfaI	GTAC	1 cut(s)	998
AfiI	CCNNNNNNNGG	3 cut(s)	651, 1114, 1236
AgsI	TTSAA	7 cut(s)	348, 476, 506, 596, 885, 970, 1291
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	8 cut(s)	59, 116, 351, 566, 746, 803, 881, 954
AluI	AGCT	8 cut(s)	59, 116, 351, 566, 746, 803, 881, 954
Alw21I	GWGCWC	1 cut(s)	982
Alw26I	GTCTC	3 cut(s)	262, 591, 858
AlwI	GGATC	2 cut(s)	49, 1034
AoxI	GGCC	4 cut(s)	79, 174, 846, 1164
ApeKI	GCWGC	5 cut(s)	5, 8, 743, 746, 803
AspLEI	GCGC	3 cut(s)	575, 932, 1010
AspS9I	GGNCC	4 cut(s)	217, 491, 689, 846
AsuC2I	CCSGG	2 cut(s)	679, 845
AsuHPI	GGTGA	2 cut(s)	779, 1129
AvaII	GGWCC	3 cut(s)	217, 491, 689
AxyI	CCTNAGG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	1239
Bbv12I	GWGCWC	1 cut(s)	982
BbvI	GCAGC	3 cut(s)	733, 755, 790
BccI	CCATC	6 cut(s)	71, 401, 710, 902, 1046, 1187
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	2 cut(s)	679, 845
BcoDI	GTCTC	3 cut(s)	262, 591, 858
BfaI	CTAG	2 cut(s)	254, 1151
BfmI	CTRYAG	3 cut(s)	393, 804, 816
BfoI	RGCGCY	3 cut(s)	576, 933, 1011
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	6, 9, 744, 747, 804
BlsI	GCNGC	5 cut(s)	7, 10, 745, 748, 805
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	3 cut(s)	302, 679, 845
Bme18I	GGWCC	3 cut(s)	217, 491, 689
BmgT120I	GGNCC	4 cut(s)	217, 491, 689, 846
BmiI	GGNNCC	5 cut(s)	219, 690, 1228, 1241, 1341
BmrFI	CCNGG	3 cut(s)	302, 679, 845
BmsI	GCATC	5 cut(s)	191, 331, 469, 1012, 1084
BpmI	CTGGAG	2 cut(s)	323, 460
BpuMI	CCSGG	2 cut(s)	679, 845
BsaBI	GATNNNNATC	2 cut(s)	1026, 1217
BsaJI	CCNNGG	4 cut(s)	177, 487, 890, 1230
BsaXI	ACNNNNNCTCC	6 cut(s)	433, 463, 522, 552, 996, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	651, 1114, 1236
Bse118I	RCCGGY	1 cut(s)	458
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	834
Bse8I	GATNNNNATC	2 cut(s)	1026, 1217
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	4 cut(s)	177, 487, 890, 1230
BseGI	GGATG	3 cut(s)	182, 1142, 1205
BseJI	GATNNNNATC	2 cut(s)	1026, 1217
BseLI	CCNNNNNNNGG	3 cut(s)	651, 1114, 1236
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	5 cut(s)	273, 369, 869, 984, 1326
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	3 cut(s)	733, 755, 790
BseYI	CCCAGC	1 cut(s)	1097
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	4 cut(s)	81, 176, 848, 1166
BshNI	GGYRCC	1 cut(s)	1239
BsiHKAI	GWGCWC	1 cut(s)	982
BsiSI	CCGG	4 cut(s)	459, 576, 678, 844
BslFI	GGGAC	5 cut(s)	384, 556, 702, 808, 908
BslI	CCNNNNNNNGG	3 cut(s)	651, 1114, 1236
BsmAI	GTCTC	3 cut(s)	262, 591, 858
BsmFI	GGGAC	5 cut(s)	384, 556, 702, 808, 908
BsmI	GAATGC	1 cut(s)	1135
BsnI	GGCC	4 cut(s)	81, 176, 848, 1166
Bsp1286I	GDGCHC	1 cut(s)	982
Bsp143I	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
Bsp19I	CCATGG	2 cut(s)	177, 890
BspACI	CCGC	2 cut(s)	368, 711
BspANI	GGCC	4 cut(s)	81, 176, 848, 1166
BspCNI	CTCAG	5 cut(s)	272, 368, 868, 985, 1327
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	5 cut(s)	219, 690, 1228, 1241, 1341
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	2 cut(s)	49, 1034
BspT107I	GGYRCC	1 cut(s)	1239
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	4 cut(s)	177, 487, 890, 1230
BssMI	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
BssNAI	GTATAC	1 cut(s)	1303
BssT1I	CCWWGG	4 cut(s)	177, 487, 890, 1230
Bst1107I	GTATAC	1 cut(s)	1303
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	72, 235
Bst6I	CTCTTC	4 cut(s)	394, 407, 757, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	460, 841
BstDEI	CTNAG	6 cut(s)	83, 259, 355, 855, 993, 1335
BstDSI	CCRYGG	2 cut(s)	177, 890
BstF5I	GGATG	3 cut(s)	182, 1142, 1205
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	3 cut(s)	576, 933, 1011
BstHHI	GCGC	3 cut(s)	575, 932, 1010
BstKTI	GATC	5 cut(s)	44, 421, 1042, 1049, 1221
BstMAI	GTCTC	3 cut(s)	262, 591, 858
BstMBI	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 133, 188, 197, 572, 665, 845
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	300, 677, 843
BstSFI	CTRYAG	3 cut(s)	393, 804, 816
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	3 cut(s)	733, 755, 790
BstX2I	RGATCY	1 cut(s)	1039
BstYI	RGATCY	1 cut(s)	1039
BstZ17I	GTATAC	1 cut(s)	1303
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	81, 176, 848, 1166
BtgI	CCRYGG	2 cut(s)	177, 890
BtsCI	GGATG	3 cut(s)	182, 1142, 1205
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	460, 841
CfoI	GCGC	3 cut(s)	575, 932, 1010
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	4 cut(s)	217, 491, 689, 846
Csp6I	GTAC	1 cut(s)	997
CviAII	CATG	8 cut(s)	178, 649, 781, 811, 891, 1033, 1136, 1306
CviQI	GTAC	1 cut(s)	997
DdeI	CTNAG	6 cut(s)	83, 259, 355, 855, 993, 1335
DpnI	GATC	5 cut(s)	43, 420, 1041, 1048, 1220
DpnII	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	4 cut(s)	394, 407, 757, 1107
EarI	CTCTTC	4 cut(s)	394, 407, 757, 1107
Eco130I	CCWWGG	4 cut(s)	177, 487, 890, 1230
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	3 cut(s)	217, 491, 689
Eco57I	CTGAAG	4 cut(s)	132, 516, 819, 1131
Eco81I	CCTNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	4 cut(s)	177, 487, 890, 1230
EcoT22I	ATGCAT	1 cut(s)	105
ErhI	CCWWGG	4 cut(s)	177, 487, 890, 1230
FaeI	CATG	8 cut(s)	181, 652, 784, 814, 894, 1036, 1139, 1309
FaqI	GGGAC	5 cut(s)	384, 556, 702, 808, 908
FatI	CATG	8 cut(s)	177, 648, 780, 810, 890, 1032, 1135, 1305
FauI	CCCGC	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	1302
Fnu4HI	GCNGC	5 cut(s)	6, 9, 744, 747, 804
FokI	GGATG	3 cut(s)	169, 1129, 1192
Fsp4HI	GCNGC	5 cut(s)	6, 9, 744, 747, 804
FspBI	CTAG	2 cut(s)	254, 1151
GlaI	GCGC	3 cut(s)	574, 931, 1009
GluI	GCNGC	5 cut(s)	6, 9, 744, 747, 804
GsaI	CCCAGC	1 cut(s)	1101
GsuI	CTGGAG	2 cut(s)	323, 460
HaeII	RGCGCY	3 cut(s)	576, 933, 1011
HaeIII	GGCC	4 cut(s)	81, 176, 848, 1166
HapII	CCGG	4 cut(s)	459, 576, 678, 844
HhaI	GCGC	3 cut(s)	575, 932, 1010
Hin1II	CATG	8 cut(s)	181, 652, 784, 814, 894, 1036, 1139, 1309
Hin6I	GCGC	3 cut(s)	573, 930, 1008
HinP1I	GCGC	3 cut(s)	573, 930, 1008
HinfI	GANTC	6 cut(s)	297, 318, 363, 376, 506, 584
HpaII	CCGG	4 cut(s)	459, 576, 678, 844
HphI	GGTGA	2 cut(s)	779, 1129
Hpy166II	GTNNAC	2 cut(s)	1120, 1303
Hpy188I	TCNGA	5 cut(s)	41, 858, 942, 1051, 1210
Hpy188III	TCNNGA	5 cut(s)	45, 380, 428, 885, 905
Hpy8I	GTNNAC	2 cut(s)	1120, 1303
HpyAV	CCTTC	1 cut(s)	920
HpyCH4III	ACNGT	2 cut(s)	72, 235
HpyCH4V	TGCA	8 cut(s)	103, 725, 743, 749, 806, 965, 1074, 1139
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 133, 188, 197, 572, 665, 845
HpyF3I	CTNAG	6 cut(s)	83, 259, 355, 855, 993, 1335
Hsp92II	CATG	8 cut(s)	181, 652, 784, 814, 894, 1036, 1139, 1309
HspAI	GCGC	3 cut(s)	573, 930, 1008
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
LmnI	GCTCC	4 cut(s)	56, 121, 205, 977
Lsp1109I	GCAGC	3 cut(s)	733, 755, 790
LweI	GCATC	5 cut(s)	191, 331, 469, 1012, 1084
MaeI	CTAG	2 cut(s)	254, 1151
MaeIII	GTNAC	3 cut(s)	272, 602, 1012
MalI	GATC	5 cut(s)	43, 420, 1041, 1048, 1220
MboI	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
MflI	RGATCY	1 cut(s)	1039
MhlI	GDGCHC	1 cut(s)	982
MluCI	AATT	4 cut(s)	694, 727, 987, 1315
MlyI	GAGTC	2 cut(s)	291, 593
MmeI	TCCRAC	2 cut(s)	769, 805
MnlI	CCTC	9 cut(s)	298, 548, 758, 785, 821, 968, 998, 1108, 1330
Mph1103I	ATGCAT	1 cut(s)	105
MroNI	GCCGGC	1 cut(s)	458
MseI	TTAA	6 cut(s)	560, 683, 1173, 1269, 1328, 1345
MslI	CAYNNNNRTG	2 cut(s)	157, 1245
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	4 cut(s)	459, 576, 678, 844
MspR9I	CCNGG	3 cut(s)	302, 679, 845
Mva1269I	GAATGC	1 cut(s)	1135
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	7 cut(s)	65, 133, 188, 197, 572, 665, 845
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	2 cut(s)	679, 845
NcoI	CCATGG	2 cut(s)	177, 890
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	8 cut(s)	181, 652, 784, 814, 894, 1036, 1139, 1309
NlaIV	GGNNCC	5 cut(s)	219, 690, 1228, 1241, 1341
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	1135
PdiI	GCCGGC	1 cut(s)	460
PfeI	GAWTC	4 cut(s)	318, 363, 376, 506
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	5 cut(s)	7, 10, 745, 748, 805
PleI	GAGTC	2 cut(s)	291, 592
PpsI	GAGTC	2 cut(s)	291, 592
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	5 cut(s)	219, 690, 1228, 1241, 1341
PspPI	GGNCC	4 cut(s)	217, 491, 689, 846
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	1039
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	998
RsaNI	GTAC	1 cut(s)	997
RseI	CAYNNNNRTG	2 cut(s)	157, 1245
SaqAI	TTAA	6 cut(s)	560, 683, 1173, 1269, 1328, 1345
SatI	GCNGC	5 cut(s)	6, 9, 744, 747, 804
Sau3AI	GATC	5 cut(s)	41, 418, 1039, 1046, 1218
Sau96I	GGNCC	4 cut(s)	217, 491, 689, 846
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	2 cut(s)	291, 593
ScrFI	CCNGG	3 cut(s)	302, 679, 845
SduI	GDGCHC	1 cut(s)	982
SfaNI	GCATC	5 cut(s)	191, 331, 469, 1012, 1084
SfcI	CTRYAG	3 cut(s)	393, 804, 816
SinI	GGWCC	3 cut(s)	217, 491, 689
SmiMI	CAYNNNNRTG	2 cut(s)	157, 1245
Sse9I	AATT	4 cut(s)	694, 727, 987, 1315
SsiI	CCGC	2 cut(s)	368, 711
SspMI	CTAG	2 cut(s)	254, 1151
StyD4I	CCNGG	3 cut(s)	300, 677, 843
StyI	CCWWGG	4 cut(s)	177, 487, 890, 1230
TaaI	ACNGT	2 cut(s)	72, 235
TasI	AATT	4 cut(s)	694, 727, 987, 1315
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	4 cut(s)	318, 363, 376, 506
Tru1I	TTAA	6 cut(s)	560, 683, 1173, 1269, 1328, 1345
Tru9I	TTAA	6 cut(s)	560, 683, 1173, 1269, 1328, 1345
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	5, 8, 743, 746, 803
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	5 cut(s)	616, 823, 882, 1229, 1322
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	3 cut(s)	217, 491, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	1302
XspI	CTAG	2 cut(s)	254, 1151
ZrmI	AGTACT	1 cut(s)	998
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.