Belongs to the beta-ketoacyl-ACP synthases family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46290 AT5G46290 AT5G46290 |
| fragaria_vesca | FvH4_3g05870 FvH4_3g05870 FvH4_5g11700 FvH4_5g11700 |
| malus_domestica | MD05G1286700.v1.1 MD06G1110900.v1.1 MD10G1264200.v1.1 MD14G1131500.v1.1 |
| prunus_persica | Prupe.4G078200_v2.0.a1 Prupe.5G123300_v2.0.a1 |
| pyrus_communis | pycom05g26510 pycom06g10370 pycom06g10380 pycom10g22030 |
| rosa_chinensis | RchiOBHm_Chr5g0013571 RchiOBHm_Chr7g0186071 |
| rosa_laevigata | RLG00000004868 RLG00000032029 |
| rosa_multiflora | Rmu_sc0000194.1_g000023 Rmu_sc0002573.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00063000 Rroxscaffold_3G00268460 |
| rosa_rugosa | Rorug05G0011100 Rorug06G0472000 |
| rosa_samantha | Rh5AG105700 Rh5BG102000 Rh5CG113800 Rh5DG100500 Rh7AG069900 Rh7BG085900 Rh7CG078400 Rh7DG078400 |
| rosa_wichuraiana | Rw5G009210 Rw7G006520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 228 |
| Acc16I | TGCGCA | 1 cut(s) | 1083 |
| AccB1I | GGYRCC | 1 cut(s) | 878 |
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AccII | CGCG | 2 cut(s) | 108, 159 |
| AciI | CCGC | 5 cut(s) | 33, 123, 147, 178, 741 |
| AclWI | GGATC | 4 cut(s) | 319, 499, 812, 983 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcuI | CTGAAG | 1 cut(s) | 1278 |
| AcyI | GRCGYC | 1 cut(s) | 225 |
| AfaI | GTAC | 3 cut(s) | 350, 395, 947 |
| AfeI | AGCGCT | 1 cut(s) | 452 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 102, 282, 315, 316 |
| AgeI | ACCGGT | 1 cut(s) | 282 |
| AgsI | TTSAA | 5 cut(s) | 675, 834, 1040, 1144, 1408 |
| AjnI | CCWGG | 1 cut(s) | 39 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 814, 846 |
| AluBI | AGCT | 8 cut(s) | 99, 247, 419, 460, 752, 903, 998, 1223 |
| AluI | AGCT | 8 cut(s) | 99, 247, 419, 460, 752, 903, 998, 1223 |
| Alw21I | GWGCWC | 1 cut(s) | 931 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 4 cut(s) | 319, 499, 812, 983 |
| Ama87I | CYCGRG | 1 cut(s) | 100 |
| Aor51HI | AGCGCT | 1 cut(s) | 452 |
| AoxI | GGCC | 8 cut(s) | 6, 132, 138, 199, 319, 550, 795, 836 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApeKI | GCWGC | 5 cut(s) | 692, 695, 752, 1258, 1330 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 587, 619 |
| AsiGI | ACCGGT | 1 cut(s) | 282 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1139 |
| AspLEI | GCGC | 4 cut(s) | 108, 159, 453, 1084 |
| AsuC2I | CCSGG | 2 cut(s) | 137, 310 |
| AsuHPI | GGTGA | 5 cut(s) | 181, 728, 884, 1047, 1118 |
| AvaI | CYCGRG | 1 cut(s) | 100 |
| AvaII | GGWCC | 5 cut(s) | 43, 60, 166, 272, 638 |
| AxyI | CCTNAGG | 1 cut(s) | 1059 |
| BaeGI | GKGCMC | 2 cut(s) | 931, 1194 |
| BanI | GGYRCC | 1 cut(s) | 878 |
| BauI | CACGAG | 1 cut(s) | 203 |
| BbsI | GAAGAC | 1 cut(s) | 205 |
| Bbv12I | GWGCWC | 1 cut(s) | 931 |
| BbvI | GCAGC | 5 cut(s) | 679, 682, 739, 1245, 1342 |
| BccI | CCATC | 6 cut(s) | 284, 350, 518, 851, 995, 1248 |
| BceAI | ACGGC | 1 cut(s) | 125 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 184, 212, 218, 246 |
| BciT130I | CCWGG | 1 cut(s) | 41 |
| BcnI | CCSGG | 2 cut(s) | 137, 310 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BfaI | CTAG | 2 cut(s) | 422, 1152 |
| BfmI | CTRYAG | 1 cut(s) | 1230 |
| BfoI | RGCGCY | 1 cut(s) | 454 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 131 |
| BisI | GCNGC | 5 cut(s) | 693, 696, 753, 1259, 1331 |
| BlsI | GCNGC | 5 cut(s) | 694, 697, 754, 1260, 1332 |
| BmcAI | AGTACT | 1 cut(s) | 947 |
| Bme1390I | CCNGG | 3 cut(s) | 41, 137, 310 |
| Bme18I | GGWCC | 5 cut(s) | 43, 60, 166, 272, 638 |
| BmeT110I | CYCGRG | 1 cut(s) | 100 |
| BmrFI | CCNGG | 3 cut(s) | 41, 137, 310 |
| BmrI | ACTGGG | 1 cut(s) | 69 |
| BmsI | GCATC | 5 cut(s) | 280, 418, 961, 1033, 1270 |
| BmuI | ACTGGG | 1 cut(s) | 69 |
| BpiI | GAAGAC | 1 cut(s) | 205 |
| BpuMI | CCSGG | 2 cut(s) | 137, 310 |
| BsaBI | GATNNNNATC | 2 cut(s) | 432, 975 |
| BsaHI | GRCGYC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 5 cut(s) | 39, 129, 135, 328, 839 |
| BsaWI | WCCGGW | 1 cut(s) | 282 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 768, 798, 876, 906 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 102, 282, 315, 316 |
| Bse118I | RCCGGY | 2 cut(s) | 191, 282 |
| Bse1I | ACTGG | 2 cut(s) | 75, 381 |
| Bse21I | CCTNAGG | 1 cut(s) | 1059 |
| Bse8I | GATNNNNATC | 2 cut(s) | 432, 975 |
| BseBI | CCWGG | 1 cut(s) | 41 |
| BseDI | CCNNGG | 5 cut(s) | 39, 129, 135, 328, 839 |
| BseGI | GGATG | 3 cut(s) | 433, 1259, 1261 |
| BseJI | GATNNNNATC | 2 cut(s) | 432, 975 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 102, 282, 315, 316 |
| BseMII | CTCAG | 3 cut(s) | 818, 1050, 1107 |
| BseNI | ACTGG | 2 cut(s) | 75, 381 |
| BseRI | GAGGAG | 2 cut(s) | 118, 1076 |
| BseSI | GKGCMC | 2 cut(s) | 931, 1194 |
| BseX3I | CGGCCG | 1 cut(s) | 138 |
| BseXI | GCAGC | 5 cut(s) | 679, 682, 739, 1245, 1342 |
| BseYI | CCCAGC | 2 cut(s) | 407, 476 |
| BsgI | GTGCAG | 1 cut(s) | 811 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 159 |
| Bsh1285I | CGRYCG | 3 cut(s) | 141, 283, 370 |
| BshFI | GGCC | 8 cut(s) | 8, 134, 140, 201, 321, 552, 797, 838 |
| BshNI | GGYRCC | 1 cut(s) | 878 |
| BshTI | ACCGGT | 1 cut(s) | 282 |
| BsiEI | CGRYCG | 3 cut(s) | 141, 283, 370 |
| BsiHKAI | GWGCWC | 1 cut(s) | 931 |
| BsiHKCI | CYCGRG | 1 cut(s) | 100 |
| BsiSI | CCGG | 6 cut(s) | 137, 192, 255, 283, 310, 882 |
| BslFI | GGGAC | 3 cut(s) | 258, 651, 857 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 102, 282, 315, 316 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| BsmBI | CGTCTC | 1 cut(s) | 115 |
| BsmFI | GGGAC | 3 cut(s) | 258, 651, 857 |
| BsmI | GAATGC | 1 cut(s) | 1403 |
| BsnI | GGCC | 8 cut(s) | 8, 134, 140, 201, 321, 552, 797, 838 |
| BsoBI | CYCGRG | 1 cut(s) | 100 |
| Bsp1286I | GDGCHC | 2 cut(s) | 931, 1194 |
| Bsp143I | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| Bsp19I | CCATGG | 2 cut(s) | 328, 839 |
| BspACI | CCGC | 5 cut(s) | 33, 123, 147, 178, 741 |
| BspANI | GGCC | 8 cut(s) | 8, 134, 140, 201, 321, 552, 797, 838 |
| BspCNI | CTCAG | 3 cut(s) | 817, 1051, 1108 |
| BspFNI | CGCG | 2 cut(s) | 108, 159 |
| BspPI | GGATC | 4 cut(s) | 319, 499, 812, 983 |
| BspT107I | GGYRCC | 1 cut(s) | 878 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 2 cut(s) | 191, 282 |
| BsrI | ACTGG | 2 cut(s) | 75, 381 |
| BssAI | RCCGGY | 2 cut(s) | 191, 282 |
| BssECI | CCNNGG | 5 cut(s) | 39, 129, 135, 328, 839 |
| BssMI | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| BssNI | GRCGYC | 1 cut(s) | 225 |
| BssSI | CACGAG | 1 cut(s) | 203 |
| BssT1I | CCWWGG | 2 cut(s) | 328, 839 |
| Bst2BI | CACGAG | 1 cut(s) | 203 |
| Bst2UI | CCWGG | 1 cut(s) | 41 |
| Bst4CI | ACNGT | 7 cut(s) | 393, 514, 683, 968, 1196, 1234, 1312 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstACI | GRCGYC | 1 cut(s) | 225 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 739, 790, 1086 |
| BstDEI | CTNAG | 4 cut(s) | 804, 1059, 1116, 1176 |
| BstDSI | CCRYGG | 2 cut(s) | 328, 839 |
| BstF5I | GGATG | 3 cut(s) | 433, 1259, 1261 |
| BstFNI | CGCG | 2 cut(s) | 108, 159 |
| BstH2I | RGCGCY | 1 cut(s) | 454 |
| BstHHI | GCGC | 4 cut(s) | 108, 159, 453, 1084 |
| BstKTI | GATC | 7 cut(s) | 327, 370, 436, 494, 625, 820, 991 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| BstMCI | CGRYCG | 3 cut(s) | 141, 283, 370 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 105, 131, 146, 450, 457, 794, 1400 |
| BstNI | CCWGG | 1 cut(s) | 41 |
| BstNSI | RCATGY | 3 cut(s) | 914, 1023, 1088 |
| BstSCI | CCNGG | 3 cut(s) | 39, 135, 308 |
| BstSFI | CTRYAG | 1 cut(s) | 1230 |
| BstSLI | GKGCMC | 2 cut(s) | 931, 1194 |
| BstUI | CGCG | 2 cut(s) | 108, 159 |
| BstV1I | GCAGC | 5 cut(s) | 679, 682, 739, 1245, 1342 |
| BstV2I | GAAGAC | 1 cut(s) | 205 |
| BstX2I | RGATCY | 1 cut(s) | 324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 329 |
| BstYI | RGATCY | 1 cut(s) | 324 |
| BstZI | CGGCCG | 1 cut(s) | 138 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1059 |
| BsuRI | GGCC | 8 cut(s) | 8, 134, 140, 201, 321, 552, 797, 838 |
| BtgI | CCRYGG | 2 cut(s) | 328, 839 |
| BtsCI | GGATG | 3 cut(s) | 433, 1259, 1261 |
| BtsIMutI | CAGTG | 4 cut(s) | 82, 1192, 1302, 1308 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 739, 790, 1086 |
| CfoI | GCGC | 4 cut(s) | 108, 159, 453, 1084 |
| Cfr10I | RCCGGY | 2 cut(s) | 191, 282 |
| CseI | GACGC | 2 cut(s) | 97, 282 |
| Csp6I | GTAC | 3 cut(s) | 349, 394, 946 |
| CspAI | ACCGGT | 1 cut(s) | 282 |
| CviAII | CATG | 9 cut(s) | 196, 329, 533, 598, 840, 911, 1020, 1085, 1334 |
| CviQI | GTAC | 3 cut(s) | 349, 394, 946 |
| DdeI | CTNAG | 4 cut(s) | 804, 1059, 1116, 1176 |
| DpnI | GATC | 7 cut(s) | 326, 369, 435, 493, 624, 819, 990 |
| DpnII | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| EagI | CGGCCG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| EciI | GGCGGA | 3 cut(s) | 112, 136, 756 |
| EclXI | CGGCCG | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 2 cut(s) | 328, 839 |
| Eco47I | GGWCC | 5 cut(s) | 43, 60, 166, 272, 638 |
| Eco47III | AGCGCT | 1 cut(s) | 452 |
| Eco52I | CGGCCG | 1 cut(s) | 138 |
| Eco57I | CTGAAG | 1 cut(s) | 1278 |
| Eco81I | CCTNAGG | 1 cut(s) | 1059 |
| Eco88I | CYCGRG | 1 cut(s) | 100 |
| EcoO109I | RGGNCCY | 4 cut(s) | 7, 166, 272, 795 |
| EcoRII | CCWGG | 1 cut(s) | 39 |
| EcoT14I | CCWWGG | 2 cut(s) | 328, 839 |
| EcoT22I | ATGCAT | 2 cut(s) | 538, 1025 |
| ErhI | CCWWGG | 2 cut(s) | 328, 839 |
| Esp3I | CGTCTC | 1 cut(s) | 115 |
| FaeI | CATG | 9 cut(s) | 199, 332, 536, 601, 843, 914, 1023, 1088, 1337 |
| FaqI | GGGAC | 3 cut(s) | 258, 651, 857 |
| FatI | CATG | 9 cut(s) | 195, 328, 532, 597, 839, 910, 1019, 1084, 1333 |
| FauI | CCCGC | 2 cut(s) | 40, 171 |
| FauNDI | CATATG | 1 cut(s) | 981 |
| Fnu4HI | GCNGC | 5 cut(s) | 693, 696, 753, 1259, 1331 |
| FokI | GGATG | 3 cut(s) | 440, 1248, 1266 |
| Fsp4HI | GCNGC | 5 cut(s) | 693, 696, 753, 1259, 1331 |
| FspAI | RTGCGCAY | 1 cut(s) | 1083 |
| FspBI | CTAG | 2 cut(s) | 422, 1152 |
| FspI | TGCGCA | 1 cut(s) | 1083 |
| GlaI | GCGC | 4 cut(s) | 107, 158, 452, 1083 |
| GluI | GCNGC | 5 cut(s) | 693, 696, 753, 1259, 1331 |
| GsaI | CCCAGC | 2 cut(s) | 411, 480 |
| HaeII | RGCGCY | 1 cut(s) | 454 |
| HaeIII | GGCC | 8 cut(s) | 8, 134, 140, 201, 321, 552, 797, 838 |
| HapII | CCGG | 6 cut(s) | 137, 192, 255, 283, 310, 882 |
| HgaI | GACGC | 2 cut(s) | 97, 282 |
| HhaI | GCGC | 4 cut(s) | 108, 159, 453, 1084 |
| Hin1I | GRCGYC | 1 cut(s) | 225 |
| Hin1II | CATG | 9 cut(s) | 199, 332, 536, 601, 843, 914, 1023, 1088, 1337 |
| Hin6I | GCGC | 4 cut(s) | 106, 157, 451, 1082 |
| HinP1I | GCGC | 4 cut(s) | 106, 157, 451, 1082 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HindIII | AAGCTT | 1 cut(s) | 458 |
| HinfI | GANTC | 2 cut(s) | 49, 700 |
| HpaI | GTTAAC | 1 cut(s) | 1069 |
| HpaII | CCGG | 6 cut(s) | 137, 192, 255, 283, 310, 882 |
| HphI | GGTGA | 5 cut(s) | 181, 728, 884, 1047, 1118 |
| Hpy166II | GTNNAC | 3 cut(s) | 929, 1069, 1376 |
| Hpy188I | TCNGA | 6 cut(s) | 29, 54, 343, 491, 523, 807 |
| Hpy188III | TCNNGA | 5 cut(s) | 304, 422, 495, 1144, 1286 |
| Hpy8I | GTNNAC | 3 cut(s) | 929, 1069, 1376 |
| Hpy99I | CGWCG | 3 cut(s) | 227, 375, 714 |
| HpyAV | CCTTC | 5 cut(s) | 157, 869, 1129, 1275, 1302 |
| HpyCH4III | ACNGT | 7 cut(s) | 393, 514, 683, 968, 1196, 1234, 1312 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 536, 792, 914, 929, 1023, 1172, 1261, 1403 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 105, 131, 146, 450, 457, 794, 1400 |
| HpyF3I | CTNAG | 4 cut(s) | 804, 1059, 1116, 1176 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92I | GRCGYC | 1 cut(s) | 225 |
| Hsp92II | CATG | 9 cut(s) | 199, 332, 536, 601, 843, 914, 1023, 1088, 1337 |
| HspAI | GCGC | 4 cut(s) | 106, 157, 451, 1082 |
| KflI | GGGWCCC | 1 cut(s) | 272 |
| KspAI | GTTAAC | 1 cut(s) | 1069 |
| Kzo9I | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| LmnI | GCTCC | 1 cut(s) | 40 |
| Lsp1109I | GCAGC | 5 cut(s) | 679, 682, 739, 1245, 1342 |
| LweI | GCATC | 5 cut(s) | 280, 418, 961, 1033, 1270 |
| MaeI | CTAG | 2 cut(s) | 422, 1152 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 3 cut(s) | 79, 1053, 1106 |
| MalI | GATC | 7 cut(s) | 326, 369, 435, 493, 624, 819, 990 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboI | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| MboII | GAAGA | 5 cut(s) | 12, 184, 205, 424, 1052 |
| MflI | RGATCY | 1 cut(s) | 324 |
| MhlI | GDGCHC | 2 cut(s) | 931, 1194 |
| MluCI | AATT | 5 cut(s) | 643, 676, 759, 933, 1277 |
| MmeI | TCCRAC | 2 cut(s) | 52, 469 |
| Mph1103I | ATGCAT | 2 cut(s) | 538, 1025 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1139 |
| MseI | TTAA | 5 cut(s) | 758, 1068, 1161, 1236, 1281 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| MspI | CCGG | 6 cut(s) | 137, 192, 255, 283, 310, 882 |
| MspR9I | CCNGG | 3 cut(s) | 41, 137, 310 |
| Mva1269I | GAATGC | 1 cut(s) | 1403 |
| MvaI | CCWGG | 1 cut(s) | 41 |
| MvnI | CGCG | 2 cut(s) | 108, 159 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 105, 131, 146, 450, 457, 794, 1400 |
| NciI | CCSGG | 2 cut(s) | 137, 310 |
| NcoI | CCATGG | 2 cut(s) | 328, 839 |
| NdeI | CATATG | 1 cut(s) | 981 |
| NdeII | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| NlaIII | CATG | 9 cut(s) | 199, 332, 536, 601, 843, 914, 1023, 1088, 1337 |
| NmeAIII | GCCGAG | 2 cut(s) | 110, 967 |
| NmuCI | GTSAC | 3 cut(s) | 79, 1053, 1106 |
| NsbI | TGCGCA | 1 cut(s) | 1083 |
| NsiI | ATGCAT | 2 cut(s) | 538, 1025 |
| NspI | RCATGY | 3 cut(s) | 914, 1023, 1088 |
| PaeI | GCATGC | 1 cut(s) | 1088 |
| PaeR7I | CTCGAG | 1 cut(s) | 100 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 222, 285 |
| PctI | GAATGC | 1 cut(s) | 1403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1139 |
| PfeI | GAWTC | 2 cut(s) | 49, 700 |
| PinAI | ACCGGT | 1 cut(s) | 282 |
| PkrI | GCNGC | 5 cut(s) | 694, 697, 754, 1260, 1332 |
| Ple19I | CGATCG | 1 cut(s) | 370 |
| PpuMI | RGGWCCY | 2 cut(s) | 166, 272 |
| Psp5II | RGGWCCY | 2 cut(s) | 166, 272 |
| Psp6I | CCWGG | 1 cut(s) | 39 |
| PspFI | CCCAGC | 2 cut(s) | 407, 476 |
| PspGI | CCWGG | 1 cut(s) | 39 |
| PspPPI | RGGWCCY | 2 cut(s) | 166, 272 |
| PspXI | VCTCGAGB | 1 cut(s) | 100 |
| PsuI | RGATCY | 1 cut(s) | 324 |
| PvuI | CGATCG | 1 cut(s) | 370 |
| RsaI | GTAC | 3 cut(s) | 350, 395, 947 |
| RsaNI | GTAC | 3 cut(s) | 349, 394, 946 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SaqAI | TTAA | 5 cut(s) | 758, 1068, 1161, 1236, 1281 |
| SatI | GCNGC | 5 cut(s) | 693, 696, 753, 1259, 1331 |
| Sau3AI | GATC | 7 cut(s) | 324, 367, 433, 491, 622, 817, 988 |
| ScaI | AGTACT | 1 cut(s) | 947 |
| ScrFI | CCNGG | 3 cut(s) | 41, 137, 310 |
| SduI | GDGCHC | 2 cut(s) | 931, 1194 |
| SfaNI | GCATC | 5 cut(s) | 280, 418, 961, 1033, 1270 |
| SfcI | CTRYAG | 1 cut(s) | 1230 |
| Sfr274I | CTCGAG | 1 cut(s) | 100 |
| SinI | GGWCC | 5 cut(s) | 43, 60, 166, 272, 638 |
| SlaI | CTCGAG | 1 cut(s) | 100 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| SmlI | CTYRAG | 1 cut(s) | 100 |
| SmoI | CTYRAG | 1 cut(s) | 100 |
| SphI | GCATGC | 1 cut(s) | 1088 |
| Sse9I | AATT | 5 cut(s) | 643, 676, 759, 933, 1277 |
| SsiI | CCGC | 5 cut(s) | 33, 123, 147, 178, 741 |
| SspMI | CTAG | 2 cut(s) | 422, 1152 |
| StyD4I | CCNGG | 3 cut(s) | 39, 135, 308 |
| StyI | CCWWGG | 2 cut(s) | 328, 839 |
| TaaI | ACNGT | 7 cut(s) | 393, 514, 683, 968, 1196, 1234, 1312 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 9 cut(s) | 101, 279, 288, 370, 470, 650, 656, 712, 1355 |
| TasI | AATT | 5 cut(s) | 643, 676, 759, 933, 1277 |
| TatI | WGTACW | 1 cut(s) | 945 |
| TfiI | GAWTC | 2 cut(s) | 49, 700 |
| Tru1I | TTAA | 5 cut(s) | 758, 1068, 1161, 1236, 1281 |
| Tru9I | TTAA | 5 cut(s) | 758, 1068, 1161, 1236, 1281 |
| TscAI | CASTG | 4 cut(s) | 82, 1199, 1302, 1315 |
| TseFI | GTSAC | 3 cut(s) | 79, 1053, 1106 |
| TseI | GCWGC | 5 cut(s) | 692, 695, 752, 1258, 1330 |
| Tsp45I | GTSAC | 3 cut(s) | 79, 1053, 1106 |
| TspDTI | ATGAA | 3 cut(s) | 106, 565, 1350 |
| TspGWI | ACGGA | 2 cut(s) | 73, 199 |
| TspRI | CASTG | 4 cut(s) | 82, 1199, 1302, 1315 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 5 cut(s) | 43, 60, 166, 272, 638 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XceI | RCATGY | 3 cut(s) | 914, 1023, 1088 |
| XhoI | CTCGAG | 1 cut(s) | 100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1139 |
| XspI | CTAG | 2 cut(s) | 422, 1152 |
| ZraI | GACGTC | 1 cut(s) | 226 |
| ZrmI | AGTACT | 1 cut(s) | 947 |
| Zsp2I | ATGCAT | 2 cut(s) | 538, 1025 |