RLG00000004868

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
63227052 .. 63230589
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004868

Sequence Viewer

Length: 1485 bp
ATGGCTGCTGCTTCTTCTTGTCCTTCTGGTGTTCTGTTCGGAGCAAGAGAAAATGGAGCTTTTCTGGCACAGTTTGACGGCCTTAGGCAAGTGGAGAAAATGCATATGCCTTTAGCTCCCACCAAGCCACAAGGGCTTGTTTCTGCTTCAGCACCAAAATGTAGAACAATCAAGGCCATGGCATCCCCTGCTGTTTCTGCTCCCAAAAGAGAAACGGACCCCAAAAAAAGAACTGTAATAACAGGGCAGGGTCTAGTCTCAGTTTTTGGAAGTGACATTGATACTTTCTACAATAGACTCCTGGAGGGAGAGAGTGGGATCACTCTAATAGACAGATTTGATGCTTCAAGCTACTCAGTTAGATTCGCGGGACAGATTCGTGATTTCTCTTCTACAGGCTACATTGATGGGAAGAATGATCGCCGTCTTGATGATTGCTGGAGATATGGTATAGTAGCCGGCAAAAAGGCCCTTGAAGATGCCAACCTTGGACCTGAAGCCCTTGAATCTTTGGACAAAACAAGGATTGGAGTGATAGTTGGGACAGGTATGGGAGGCTTAACAGCTTTCAGCGCCGGAGTGGAGTCTCTTGTTCAAAAGGGTTACAAGAAGATTAGTCCATTTTTCATTCCTTACTCCATTACCAACATGGGGTCAGCATTGTTAGCAATAGACACCGGGTTAATGGGACCAAATTACTCCATCTCTACCGCTTGTGCCACTGCAAATTACTGCTTCTATGCAGCTGCAAATCACATTAGAAGAGGTGAAGCAGATATCATGGTAGTTGGAGGGACTGAAGCTGCAGTCATGCCTGTAGGTGTGGGAGGTTTCATTGCTTGCCGGGCCTTGTCTCAGAGAAATGATGAACCCCACAGAGCTTCAAGACCGTGGGACAAAAATCGTGATGGTTTCGTTATGGGAGAAGGCTCTGGTGTTCTGGTTATGGAGAGCTTGGAGAGTGCATTGAAAAGAGGTGCACCTATAATTGCAGAGTACTTGGGAGGTGCTGTAACTTGTGATGCTCACCACATGACAGATCCTAGAGCAGATGGACTTGGAGTGTCATCTTGCATAATCAAGAGTTTAGAAGATGCTGGGGTTTCCCCCGAAGAGGTGAACTATGTGAATGCTCATGCAACATCCACATTAGCAGGAGATTTGGCTGAGTTTAATGCCATCAAAAAGGTCTTTGGGAAGAACACTTCCAAGATGAAGATCAATGGAACCAAGTCCATGATTGGACATGGTCTTGGGGCTGCTGGTGGATTGGAAGCCATAGCAACCATCAAAGCAATCAACACTGGCTGGCTTCACCCAACAATTAATCAAGATGACTTGGAGCCTGCTGTTACAATCGACACAGTTCCAAACGTAAAGAAGAAGCATGAGGTTAATGTTGATCTTCAACTTGCAGCTATCTCAAACTCATTCGGCTTTGGAGGGCACAATTCTGTGGTGGTGTTTGCCCCTTACAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

495

Amino Acids

52.16

Weight (kDa)

6.8

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 77 - 322 1.1e-52 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 331 - 444 1e-33 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 368, 711
AclWI GGATC 2 cut(s) 326, 1034
AcuI CTGAAG 3 cut(s) 132, 516, 819
AfaI GTAC 1 cut(s) 998
AfiI CCNNNNNNNGG 2 cut(s) 651, 1114
AgsI TTSAA 7 cut(s) 348, 476, 506, 596, 885, 970, 1409
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 9 cut(s) 59, 116, 351, 566, 746, 803, 881, 954, 1418
AluI AGCT 9 cut(s) 59, 116, 351, 566, 746, 803, 881, 954, 1418
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 3 cut(s) 262, 591, 858
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 2 cut(s) 326, 1034
AoxI GGCC 4 cut(s) 79, 174, 468, 846
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 7 cut(s) 5, 8, 743, 746, 803, 1259, 1415
AseI ATTAAT 1 cut(s) 1326
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 5 cut(s) 217, 469, 491, 689, 846
AsuC2I CCSGG 2 cut(s) 679, 845
AsuHPI GGTGA 4 cut(s) 779, 1019, 1129, 1307
AvaII GGWCC 3 cut(s) 217, 491, 689
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 2 cut(s) 982, 1449
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 5 cut(s) 733, 755, 790, 1246, 1427
BccI CCATC 6 cut(s) 401, 710, 902, 1046, 1187, 1295
BceAI ACGGC 2 cut(s) 94, 408
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 679, 845
BcoDI GTCTC 3 cut(s) 262, 591, 858
BfaI CTAG 2 cut(s) 254, 1044
BfmI CTRYAG 3 cut(s) 393, 804, 816
BfoI RGCGCY 1 cut(s) 576
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 7 cut(s) 6, 9, 744, 747, 804, 1260, 1416
BlsI GCNGC 7 cut(s) 7, 10, 745, 748, 805, 1261, 1417
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 3 cut(s) 302, 679, 845
Bme18I GGWCC 3 cut(s) 217, 491, 689
BmgT120I GGNCC 5 cut(s) 217, 469, 491, 689, 846
BmiI GGNNCC 4 cut(s) 219, 690, 1228, 1344
BmrFI CCNGG 3 cut(s) 302, 679, 845
BmsI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
BpmI CTGGAG 2 cut(s) 323, 460
BpuMI CCSGG 2 cut(s) 679, 845
BsaBI GATNNNNATC 1 cut(s) 1217
BsaJI CCNNGG 3 cut(s) 177, 487, 890
BsaXI ACNNNNNCTCC 6 cut(s) 433, 463, 522, 552, 996, 1026
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 1114
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 1309
Bse21I CCTNAGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 834
Bse8I GATNNNNATC 1 cut(s) 1217
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 177, 487, 890
BseGI GGATG 2 cut(s) 182, 1142
BseJI GATNNNNATC 1 cut(s) 1217
BseLI CCNNNNNNNGG 2 cut(s) 651, 1114
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 4 cut(s) 273, 369, 869, 1158
BseNI ACTGG 1 cut(s) 1309
BseSI GKGCMC 2 cut(s) 982, 1449
BseXI GCAGC 5 cut(s) 733, 755, 790, 1246, 1427
BseYI CCCAGC 1 cut(s) 1097
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 81, 176, 470, 848
BsiHKAI GWGCWC 1 cut(s) 982
BsiSI CCGG 4 cut(s) 459, 576, 678, 844
BslFI GGGAC 5 cut(s) 384, 556, 702, 808, 908
BslI CCNNNNNNNGG 2 cut(s) 651, 1114
BsmAI GTCTC 3 cut(s) 262, 591, 858
BsmFI GGGAC 5 cut(s) 384, 556, 702, 808, 908
BsmI GAATGC 1 cut(s) 1135
BsnI GGCC 4 cut(s) 81, 176, 470, 848
Bsp1286I GDGCHC 2 cut(s) 982, 1449
Bsp143I GATC 5 cut(s) 318, 418, 1039, 1218, 1402
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 368, 711
BspANI GGCC 4 cut(s) 81, 176, 470, 848
BspCNI CTCAG 4 cut(s) 272, 368, 868, 1159
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 4 cut(s) 219, 690, 1228, 1344
BspMAI CTGCAG 1 cut(s) 808
BspPI GGATC 2 cut(s) 326, 1034
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 1 cut(s) 1309
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 177, 487, 890
BssMI GATC 5 cut(s) 318, 418, 1039, 1218, 1402
BssT1I CCWWGG 2 cut(s) 177, 487
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 72, 235, 891, 1366
Bst6I CTCTTC 3 cut(s) 394, 757, 1107
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 4 cut(s) 460, 841, 1310, 1347
BstDEI CTNAG 5 cut(s) 83, 259, 355, 855, 1167
BstDSI CCRYGG 2 cut(s) 177, 890
BstF5I GGATG 2 cut(s) 182, 1142
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 5 cut(s) 321, 421, 1042, 1221, 1405
BstMAI GTCTC 3 cut(s) 262, 591, 858
BstMBI GATC 5 cut(s) 318, 418, 1039, 1218, 1402
BstMWI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 300, 677, 843
BstSFI CTRYAG 3 cut(s) 393, 804, 816
BstSLI GKGCMC 2 cut(s) 982, 1449
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 5 cut(s) 733, 755, 790, 1246, 1427
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 4 cut(s) 81, 176, 470, 848
BtgI CCRYGG 2 cut(s) 177, 890
BtsCI GGATG 2 cut(s) 182, 1142
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 2 cut(s) 720, 1302
Cac8I GCNNGC 4 cut(s) 460, 841, 1310, 1347
CfoI GCGC 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 5 cut(s) 217, 469, 491, 689, 846
Csp6I GTAC 1 cut(s) 997
CviAII CATG 9 cut(s) 178, 649, 781, 811, 1033, 1136, 1237, 1247, 1388
CviQI GTAC 1 cut(s) 997
DdeI CTNAG 5 cut(s) 83, 259, 355, 855, 1167
DpnI GATC 5 cut(s) 320, 420, 1041, 1220, 1404
DpnII GATC 5 cut(s) 318, 418, 1039, 1218, 1402
Eam1104I CTCTTC 3 cut(s) 394, 757, 1107
EarI CTCTTC 3 cut(s) 394, 757, 1107
Eco130I CCWWGG 2 cut(s) 177, 487
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 217, 491, 689
Eco57I CTGAAG 3 cut(s) 132, 516, 819
Eco81I CCTNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 177, 487
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 177, 487
FaeI CATG 9 cut(s) 181, 652, 784, 814, 1036, 1139, 1240, 1250, 1391
FaqI GGGAC 5 cut(s) 384, 556, 702, 808, 908
FatI CATG 9 cut(s) 177, 648, 780, 810, 1032, 1135, 1236, 1246, 1387
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 7 cut(s) 6, 9, 744, 747, 804, 1260, 1416
FokI GGATG 2 cut(s) 169, 1129
Fsp4HI GCNGC 7 cut(s) 6, 9, 744, 747, 804, 1260, 1416
FspBI CTAG 2 cut(s) 254, 1044
GlaI GCGC 1 cut(s) 574
GluI GCNGC 7 cut(s) 6, 9, 744, 747, 804, 1260, 1416
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 2 cut(s) 323, 460
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 4 cut(s) 81, 176, 470, 848
HapII CCGG 4 cut(s) 459, 576, 678, 844
HhaI GCGC 1 cut(s) 575
Hin1II CATG 9 cut(s) 181, 652, 784, 814, 1036, 1139, 1240, 1250, 1391
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HinfI GANTC 5 cut(s) 297, 363, 376, 506, 584
HpaII CCGG 4 cut(s) 459, 576, 678, 844
HphI GGTGA 4 cut(s) 779, 1019, 1129, 1307
Hpy166II GTNNAC 2 cut(s) 980, 1120
Hpy188I TCNGA 2 cut(s) 41, 858
Hpy188III TCNNGA 6 cut(s) 380, 428, 885, 905, 1081, 1331
Hpy8I GTNNAC 2 cut(s) 980, 1120
HpyAV CCTTC 2 cut(s) 33, 920
HpyCH4III ACNGT 4 cut(s) 72, 235, 891, 1366
HpyCH4IV ACGT 1 cut(s) 1374
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
HpyF3I CTNAG 5 cut(s) 83, 259, 355, 855, 1167
HpySE526I ACGT 1 cut(s) 1374
Hsp92II CATG 9 cut(s) 181, 652, 784, 814, 1036, 1139, 1240, 1250, 1391
HspAI GCGC 1 cut(s) 573
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 5 cut(s) 318, 418, 1039, 1218, 1402
LmnI GCTCC 5 cut(s) 41, 56, 121, 205, 1342
Lsp1109I GCAGC 5 cut(s) 733, 755, 790, 1246, 1427
LweI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
MaeI CTAG 2 cut(s) 254, 1044
MaeII ACGT 1 cut(s) 1374
MaeIII GTNAC 4 cut(s) 272, 602, 1012, 1351
MalI GATC 5 cut(s) 320, 420, 1041, 1220, 1404
MboI GATC 5 cut(s) 318, 418, 1039, 1218, 1402
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 2 cut(s) 982, 1449
MluCI AATT 5 cut(s) 694, 727, 987, 1323, 1450
MlyI GAGTC 2 cut(s) 291, 593
MmeI TCCRAC 1 cut(s) 769
Mph1103I ATGCAT 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 5 cut(s) 560, 683, 1173, 1326, 1395
MslI CAYNNNNRTG 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 4 cut(s) 459, 576, 678, 844
MspR9I CCNGG 3 cut(s) 302, 679, 845
Mva1269I GAATGC 1 cut(s) 1135
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 7 cut(s) 65, 133, 188, 197, 572, 665, 845
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 2 cut(s) 679, 845
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 105
NdeII GATC 5 cut(s) 318, 418, 1039, 1218, 1402
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 9 cut(s) 181, 652, 784, 814, 1036, 1139, 1240, 1250, 1391
NlaIV GGNNCC 4 cut(s) 219, 690, 1228, 1344
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 105
PctI GAATGC 1 cut(s) 1135
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 3 cut(s) 363, 376, 506
PflFI GACNNNGTC 1 cut(s) 1248
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 7 cut(s) 7, 10, 745, 748, 805, 1261, 1417
PleI GAGTC 2 cut(s) 291, 592
PpsI GAGTC 2 cut(s) 291, 592
PshBI ATTAAT 1 cut(s) 1326
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 219, 690, 1228, 1344
PspPI GGNCC 5 cut(s) 217, 469, 491, 689, 846
PstI CTGCAG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 1039
PsyI GACNNNGTC 1 cut(s) 1248
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 998
RsaNI GTAC 1 cut(s) 997
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 5 cut(s) 560, 683, 1173, 1326, 1395
SatI GCNGC 7 cut(s) 6, 9, 744, 747, 804, 1260, 1416
Sau3AI GATC 5 cut(s) 318, 418, 1039, 1218, 1402
Sau96I GGNCC 5 cut(s) 217, 469, 491, 689, 846
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 2 cut(s) 291, 593
ScrFI CCNGG 3 cut(s) 302, 679, 845
SduI GDGCHC 2 cut(s) 982, 1449
SfaNI GCATC 5 cut(s) 191, 331, 469, 1012, 1084
SfcI CTRYAG 3 cut(s) 393, 804, 816
SinI GGWCC 3 cut(s) 217, 491, 689
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 5 cut(s) 694, 727, 987, 1323, 1450
SsiI CCGC 2 cut(s) 368, 711
SspMI CTAG 2 cut(s) 254, 1044
StyD4I CCNGG 3 cut(s) 300, 677, 843
StyI CCWWGG 2 cut(s) 177, 487
TaaI ACNGT 4 cut(s) 72, 235, 891, 1366
TaiI ACGT 1 cut(s) 1377
TaqI TCGA 1 cut(s) 1359
TasI AATT 5 cut(s) 694, 727, 987, 1323, 1450
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 3 cut(s) 363, 376, 506
Tru1I TTAA 5 cut(s) 560, 683, 1173, 1326, 1395
Tru9I TTAA 5 cut(s) 560, 683, 1173, 1326, 1395
TscAI CASTG 2 cut(s) 727, 1309
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 7 cut(s) 5, 8, 743, 746, 803, 1259, 1415
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 616, 823, 882, 1229
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 727, 1309
Tth111I GACNNNGTC 1 cut(s) 1248
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 3 cut(s) 217, 491, 689
VspI ATTAAT 1 cut(s) 1326
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XspI CTAG 2 cut(s) 254, 1044
ZrmI AGTACT 1 cut(s) 998
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.