Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Reverse (-)

19161009 .. 19163980

Gene Structure 2972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACCGGCGTTGGCGAGAATCAGCTTATCTCCATTCAACCTGATGAACTCAAATTTCTCTTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGTTGCCAATAAAACAGAGAACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAGAAGTATTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGTTACTCTACAAGCGCAACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCAAAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTTTCACCAAGGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCTTATATTACCCCGTCTACAACCCAAAGATCCTCTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCATCTCTACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCTGCAACATGAATTGGAAACGGTAAGGAGGCGGAGAAACCAGAGGAACAGCGGAAATGGGCTATCCTTGAAGTTGGCAGCTATGGTTGGACTCATCGGACTCATCATCGGTTTCATCCTAAAACTTACCTTAGCTTCTCCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

220

Amino Acids

24.67

Weight (kDa)

8.82

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	10 - 110	2e-29	MSP (Major sperm protein) domain
Cep192_D6	PF22076	10 - 77	6.7e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	419
AciI	CCGC	3 cut(s)	472, 547, 567
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	53, 266
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	283, 291
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	38, 65, 130, 586
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	7 cut(s)	25, 81, 370, 447, 517, 596, 650
AluI	AGCT	7 cut(s)	25, 81, 370, 447, 517, 596, 650
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	475
Aor13HI	TCCGGA	1 cut(s)	419
ApeKI	GCWGC	3 cut(s)	494, 517, 593
ApoI	RAATTY	2 cut(s)	53, 266
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	145, 325, 446
BaeI	ACNNNNGTAYC	4 cut(s)	221, 254, 273, 306
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbvI	GCAGC	3 cut(s)	504, 506, 605
BccI	CCATC	2 cut(s)	431, 464
BceAI	ACGGC	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	4 cut(s)	473, 495, 518, 594
BlsI	GCNGC	4 cut(s)	474, 496, 519, 595
BmsI	GCATC	2 cut(s)	213, 481
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	646
BpuEI	CTTGAG	2 cut(s)	89, 306
BsaJI	CCNNGG	2 cut(s)	191, 336
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	191, 336
BseGI	GGATG	2 cut(s)	316, 630
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	504, 506, 605
BsiSI	CCGG	2 cut(s)	6, 420
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	88, 407
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	3 cut(s)	472, 547, 567
BspEI	TCCGGA	1 cut(s)	419
BspPI	GGATC	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	191, 336
BssMI	GATC	2 cut(s)	88, 407
BssT1I	CCWWGG	2 cut(s)	191, 336
Bst4CI	ACNGT	3 cut(s)	86, 344, 538
Bst6I	CTCTTC	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	646
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	316, 630
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	91, 410
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	88, 407
BstV1I	GCAGC	3 cut(s)	504, 506, 605
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	316, 630
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	4 cut(s)	174, 260, 300, 349
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	282, 290
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	192, 524
CviQI	GTAC	2 cut(s)	282, 290
DdeI	CTNAG	1 cut(s)	646
DpnI	GATC	2 cut(s)	90, 409
DpnII	GATC	2 cut(s)	88, 407
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	191, 336
Eco57I	CTGAAG	1 cut(s)	497
EcoT14I	CCWWGG	2 cut(s)	191, 336
ErhI	CCWWGG	2 cut(s)	191, 336
FaeI	CATG	2 cut(s)	195, 527
FaiI	YATR	8 cut(s)	120, 193, 251, 384, 467, 525, 599, 661
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	191, 523
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	473, 495, 518, 594
FokI	GGATG	2 cut(s)	323, 617
Fsp4HI	GCNGC	4 cut(s)	473, 495, 518, 594
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	473, 495, 518, 594
GsuI	CTGGAG	1 cut(s)	228
HapII	CCGG	2 cut(s)	6, 420
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	195, 527
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	5 cut(s)	19, 197, 416, 606, 615
HpaII	CCGG	2 cut(s)	6, 420
HphI	GGTGA	3 cut(s)	145, 325, 446
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	3 cut(s)	415, 451, 614
Hpy188III	TCNNGA	3 cut(s)	245, 323, 420
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	3 cut(s)	86, 344, 538
HpyCH4V	TGCA	6 cut(s)	204, 253, 258, 277, 494, 520
HpyF3I	CTNAG	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	195, 527
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	88, 407
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	7 cut(s)	19, 54, 162, 258, 287, 433, 569
Lsp1109I	GCAGC	3 cut(s)	504, 506, 605
LweI	GCATC	2 cut(s)	213, 481
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	90, 409
MboI	GATC	2 cut(s)	88, 407
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	3 cut(s)	53, 266, 527
MlyI	GAGTC	3 cut(s)	191, 600, 609
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	6 cut(s)	252, 303, 330, 421, 537, 552
MroI	TCCGGA	1 cut(s)	419
MseI	TTAA	3 cut(s)	93, 356, 501
MslI	CAYNNNNRTG	2 cut(s)	303, 305
MspA1I	CMGCKG	3 cut(s)	472, 517, 567
MspI	CCGG	2 cut(s)	6, 420
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	88, 407
NlaIII	CATG	2 cut(s)	195, 527
OliI	CACNNNNGTG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	19, 416
PkrI	GCNGC	4 cut(s)	474, 496, 519, 595
PleI	GAGTC	3 cut(s)	191, 600, 609
PpsI	GAGTC	3 cut(s)	191, 600, 609
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	2 cut(s)	283, 291
RsaNI	GTAC	2 cut(s)	282, 290
RseI	CAYNNNNRTG	2 cut(s)	303, 305
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	93, 356, 501
SatI	GCNGC	4 cut(s)	473, 495, 518, 594
Sau3AI	GATC	2 cut(s)	88, 407
SchI	GAGTC	3 cut(s)	191, 600, 609
SfaNI	GCATC	2 cut(s)	213, 481
SmiMI	CAYNNNNRTG	2 cut(s)	303, 305
SmlI	CTYRAG	2 cut(s)	68, 321
SmoI	CTYRAG	2 cut(s)	68, 321
Sse9I	AATT	3 cut(s)	53, 266, 527
SsiI	CCGC	3 cut(s)	472, 547, 567
StyI	CCWWGG	2 cut(s)	191, 336
TaaI	ACNGT	3 cut(s)	86, 344, 538
TasI	AATT	3 cut(s)	53, 266, 527
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	19, 416
Tru1I	TTAA	3 cut(s)	93, 356, 501
Tru9I	TTAA	3 cut(s)	93, 356, 501
TscAI	CASTG	4 cut(s)	181, 260, 307, 349
TseI	GCWGC	3 cut(s)	494, 517, 593
TspDTI	ATGAA	4 cut(s)	60, 327, 540, 619
TspRI	CASTG	4 cut(s)	181, 260, 307, 349
XapI	RAATTY	2 cut(s)	53, 266
XmiI	GTMKAC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.