RLG00000003392

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003766
Physical Location & Seq
Reverse (-)
48006575 .. 48014919
8345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003392

Sequence Viewer

Length: 603 bp
ATGGAAGAGATGGGTGTGGTAAAGGAAGAGAACCGTTCTTATCTTGCTGTTCGTCTTTTAAGAGTGACGGTGGTGCTTAATGGGAGATATAACAGGAGTGTAAATATACCCTGTTTAAGAGTCCCACTAGAGAAACCACATGAAAAACTGGTGCGAACATTAGAGCACATGAAGCTCACTTGCCAATCACAAGTTATCAAAGATAAGCAGGCAGGAGGAGTTGTTCACATCCTTGTCAACCTCCGTGGCCAACGAAAATATCCTCCAAATATGGAGTGCAAAGATAAGTTTCTCCTACAGTGCACGATAGTGCCTCCAAATTCTGATGTTGATGAGCTTCCAAAATATACCTTCACCAAGGGAATCGGAAGGACAATAGAGGAATGCAAGTTTAGGGTTGTGTATATCTATCCGGGTGCAAATTCTTTGCAGCGCTTGAAGGAAGAAAGAGATTCAGCTGTTAAACACACACAGATACTTCAAGAGGAACTGGATATACTGAAGAGGCAAAGATCTCGGAAAGGGTTTGGACAAAGATTCAGATCTTGGTGGTCGTCCATCATGAGTGCCGGTTGTGGATATACGGAAGATGCCAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

201

Amino Acids

23.18

Weight (kDa)

9.55

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 319, 421
AcuI CTGAAG 1 cut(s) 521
AfeI AGCGCT 1 cut(s) 434
AgsI TTSAA 2 cut(s) 439, 482
AleI CACNNNNGTG 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 3 cut(s) 175, 337, 458
AluI AGCT 3 cut(s) 175, 337, 458
Alw21I GWGCWC 2 cut(s) 168, 305
Alw44I GTGCAC 1 cut(s) 301
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 2 cut(s) 319, 421
AspLEI GCGC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 249
Bbv12I GWGCWC 2 cut(s) 168, 305
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 4, 566
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcnI CCSGG 1 cut(s) 414
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 436
BglII AGATCT 2 cut(s) 512, 542
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 244, 357
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 153, 495
Bse8I GATNNNNATC 1 cut(s) 541
BseDI CCNNGG 2 cut(s) 244, 357
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 541
BseNI ACTGG 2 cut(s) 153, 495
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 168, 305
BsiSI CCGG 2 cut(s) 413, 570
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 168, 305
Bsp143I GATC 2 cut(s) 512, 542
BspANI GGCC 1 cut(s) 249
BspHI TCATGA 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 2 cut(s) 153, 495
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 244, 357
BssMI GATC 2 cut(s) 512, 542
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 35, 70, 300
Bst6I CTCTTC 2 cut(s) 21, 497
BstC8I GCNNGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 2 cut(s) 515, 545
BstMBI GATC 2 cut(s) 512, 542
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 2 cut(s) 512, 542
BstYI RGATCY 2 cut(s) 512, 542
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 210
CciI TCATGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 569
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 3 cut(s) 140, 169, 562
CviJI RGCY 4 cut(s) 175, 249, 337, 458
CviKI_1 RGCY 4 cut(s) 175, 249, 337, 458
DpnI GATC 2 cut(s) 514, 544
DpnII GATC 2 cut(s) 512, 542
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 21, 497
EarI CTCTTC 2 cut(s) 21, 497
Eco130I CCWWGG 1 cut(s) 357
Eco47III AGCGCT 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 3 cut(s) 143, 172, 565
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 139, 168, 561
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 413, 570
HhaI GCGC 1 cut(s) 435
Hin1II CATG 3 cut(s) 143, 172, 565
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 4 cut(s) 120, 363, 452, 537
HpaII CCGG 2 cut(s) 413, 570
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 226, 238, 303
Hpy188I TCNGA 4 cut(s) 325, 368, 519, 542
Hpy188III TCNNGA 2 cut(s) 482, 562
Hpy8I GTNNAC 3 cut(s) 226, 238, 303
HpyAV CCTTC 3 cut(s) 361, 363, 433
HpyCH4III ACNGT 3 cut(s) 35, 70, 300
HpyCH4V TGCA 5 cut(s) 279, 303, 387, 419, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
Hsp92II CATG 3 cut(s) 143, 172, 565
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 512, 542
LpnPI CCDG 8 cut(s) 79, 124, 134, 194, 198, 426, 476, 583
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 514, 544
MboI GATC 2 cut(s) 512, 542
MboII GAAGA 5 cut(s) 17, 38, 455, 514, 599
MflI RGATCY 2 cut(s) 512, 542
MhlI GDGCHC 2 cut(s) 168, 305
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 319, 421
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 7 cut(s) 209, 251, 273, 324, 373, 478, 498
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 4 cut(s) 59, 78, 116, 462
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 413, 570
MspR9I CCNGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 414
NdeII GATC 2 cut(s) 512, 542
NlaIII CATG 3 cut(s) 143, 172, 565
NmuCI GTSAC 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 308
PagI TCATGA 1 cut(s) 561
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 3 cut(s) 363, 452, 537
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PsuI RGATCY 2 cut(s) 512, 542
PvuII CAGCTG 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 4 cut(s) 59, 78, 116, 462
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 2 cut(s) 512, 542
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 2 cut(s) 168, 305
SetI ASST 5 cut(s) 177, 243, 339, 353, 460
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 2 cut(s) 319, 421
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 3 cut(s) 35, 70, 300
TasI AATT 2 cut(s) 319, 421
TfiI GAWTC 3 cut(s) 363, 452, 537
Tru1I TTAA 4 cut(s) 59, 78, 116, 462
Tru9I TTAA 4 cut(s) 59, 78, 116, 462
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 156, 185
TspGWI ACGGA 2 cut(s) 233, 599
TspRI CASTG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 301
XapI RAATTY 2 cut(s) 319, 421
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.