Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Forward (+)

22958683 .. 22962654

Gene Structure 3972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGTGCCGGTGGTGGTAATCAGTTGATCTCTGTTCTTCCGGAGGAGCTCAGATTTCAATTTGAGCTGGAAAAGCAAAGCTTTTGCGATCTAAAAGTCATCAACAACACAGAAAACCATGTTGCTTTCAAGGTTAAAACCACTTCCCCTAAGAAGTACTTTGTACGGCCCAACACTGGTGTTATACAGGCTTGGGACTCGTGTGTAATCAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCAGACATGCAGTGCAAGGATAAATTTCTCCTACAGAGTACAACGGTGCCTCAAAATTCTGATGTTGATGAACTTCCACAAGATACTTTCACCAAAGAAAGTGGAAGGACAATAGAGGAGTGCAAGCTTAGAGTTGTCTATTTAACTCCGGGTCAAGGAAACTCAGAAGATGGAGCTTCTATGCGTGGTCTTGATACCAATTCTAATCAGACTTTCCAGCGCCTGAAGGAAGAAAGAGATTCAGCTGTTAGACAAACACAGACACTTCAACAGGAACTGGACATACTGAAGAGGCGGAGATACCGGAAAGGTGACCCAGGCTTTTCCTTCACCTTTGCAATTTTTGTGGGACTTATTGGACTCATGGTTGGCTTCCTCTTGAATCTGTCATTGTCTTCACCACCCATAGAAGCTTCATCATCCACAGAATCTTCACCATTAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

230

Amino Acids

25.9

Weight (kDa)

5.64

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cep192_D6	PF22076	10 - 77	1.3e-06	Cep192 domain 6
Motile_Sperm	PF00635	11 - 110	2.5e-29	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	266, 298
AcuI	CTGAAG	2 cut(s)	488, 551
AfaI	GTAC	3 cut(s)	158, 165, 283
AfiI	CCNNNNNNNGG	2 cut(s)	176, 398
AgsI	TTSAA	4 cut(s)	59, 130, 512, 625
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	7 cut(s)	49, 67, 81, 370, 419, 488, 656
AluI	AGCT	7 cut(s)	49, 67, 81, 370, 419, 488, 656
Alw21I	GWGCWC	1 cut(s)	51
AlwNI	CAGNNNCTG	2 cut(s)	466, 520
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	266, 298
AseI	ATTAAT	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	6 cut(s)	208, 325, 565, 566, 633, 669
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	393, 561
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	393, 561
BpiI	GAAGAC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpmI	CTGGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	559
BsaWI	WCCGGW	2 cut(s)	40, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 398
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	181, 525
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	662
BseLI	CCNNNNNNNGG	2 cut(s)	176, 398
BseMII	CTCAG	2 cut(s)	64, 420
BseNI	ACTGG	2 cut(s)	181, 525
BseRI	GAGGAG	2 cut(s)	59, 374
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	4 cut(s)	9, 41, 392, 547
BslFI	GGGAC	2 cut(s)	209, 606
BslI	CCNNNNNNNGG	2 cut(s)	176, 398
BsmFI	GGGAC	2 cut(s)	209, 606
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	27, 88
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	63, 419
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	181, 525
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	2 cut(s)	27, 88
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	4 cut(s)	50, 150, 371, 406
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	662
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	30, 91
BstMBI	GATC	2 cut(s)	27, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	391, 559
BstSFI	CTRYAG	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	174, 260
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	2 cut(s)	466, 520
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	157, 164, 282
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 570, 605
CviAII	CATG	3 cut(s)	119, 250, 607
CviQI	GTAC	3 cut(s)	157, 164, 282
DdeI	CTNAG	4 cut(s)	50, 150, 371, 406
DpnI	GATC	2 cut(s)	29, 90
DpnII	GATC	2 cut(s)	27, 88
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	488, 551
Eco91I	GGTNACC	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	3 cut(s)	122, 253, 610
FaiI	YATR	7 cut(s)	120, 185, 251, 425, 527, 608, 650
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 143, 175
FaqI	GGGAC	2 cut(s)	209, 606
FatI	CATG	3 cut(s)	118, 249, 606
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	464
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	4 cut(s)	9, 41, 392, 547
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	122, 253, 610
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HindIII	AAGCTT	3 cut(s)	79, 368, 654
HinfI	GANTC	6 cut(s)	197, 213, 482, 603, 625, 671
HpaII	CCGG	4 cut(s)	9, 41, 392, 547
HphI	GGTGA	6 cut(s)	208, 325, 565, 566, 633, 669
Hpy188I	TCNGA	5 cut(s)	53, 212, 304, 409, 453
Hpy188III	TCNNGA	4 cut(s)	41, 245, 434, 622
HpyAV	CCTTC	3 cut(s)	342, 463, 580
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	253, 258, 366, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	4 cut(s)	50, 150, 371, 406
Hsp92II	CATG	3 cut(s)	122, 253, 610
HspAI	GCGC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	27, 88
LmnI	GCTCC	2 cut(s)	46, 416
MaeIII	GTNAC	2 cut(s)	214, 554
MalI	GATC	2 cut(s)	29, 90
MboI	GATC	2 cut(s)	27, 88
MboII	GAAGA	6 cut(s)	29, 422, 485, 544, 630, 666
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	5 cut(s)	59, 266, 298, 442, 582
MlyI	GAGTC	3 cut(s)	191, 222, 597
MnlI	CCTC	7 cut(s)	37, 230, 252, 303, 352, 528, 629
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	3 cut(s)	135, 386, 683
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	4 cut(s)	9, 41, 392, 547
MspR9I	CCNGG	2 cut(s)	393, 561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	27, 88
NlaIII	CATG	3 cut(s)	122, 253, 610
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	214, 554
NspI	RCATGY	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	482, 625, 671
PleI	GAGTC	3 cut(s)	191, 221, 597
PpsI	GAGTC	3 cut(s)	191, 221, 597
PshBI	ATTAAT	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
PstNI	CAGNNNCTG	2 cut(s)	466, 520
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	3 cut(s)	158, 165, 283
RsaNI	GTAC	3 cut(s)	157, 164, 282
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	135, 386, 683
Sau3AI	GATC	2 cut(s)	27, 88
Sau96I	GGNCC	1 cut(s)	168
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	3 cut(s)	191, 222, 597
ScrFI	CCNGG	2 cut(s)	393, 561
SduI	GDGCHC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	59, 266, 298, 442, 582
SsiI	CCGC	1 cut(s)	538
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	391, 559
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	5 cut(s)	59, 266, 298, 442, 582
TatI	WGTACW	2 cut(s)	156, 281
TfiI	GAWTC	3 cut(s)	482, 625, 671
Tru1I	TTAA	3 cut(s)	135, 386, 683
Tru9I	TTAA	3 cut(s)	135, 386, 683
TscAI	CASTG	2 cut(s)	181, 260
TseFI	GTSAC	2 cut(s)	214, 554
Tsp45I	GTSAC	2 cut(s)	214, 554
TspDTI	ATGAA	2 cut(s)	327, 648
TspRI	CASTG	2 cut(s)	181, 260
VspI	ATTAAT	1 cut(s)	683
XapI	RAATTY	2 cut(s)	266, 298
XceI	RCATGY	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.