Rorug07G0088800

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003766
Physical Location & Seq
Forward (+)
6996798 .. 6997235
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0088800.1

Sequence Viewer

Length: 438 bp
ATGGTTCGTTGGGAAGAAGAGGATTTCCCTATGCAGATTCCACTTTCCGCCACAGTTATGCAAGTGAAATTAAGGATTTCGCAAGAACGAGGAATCGCAATCCCTGCCGATAGGCAAGAGCTGAGCTTGGAAAACGGGACGTGGCTGCAAAGTGATGCAATGACTGTGCAACAATACGGCATTTCTCATGGTTCTGTCCTCACCCTCCTTCGGAAAATTGCAGTCACAATCCGGATAGCCGACCAGTATTCCTTGGCGTTGATTGTCAATGAAGAAATCACTGTGGCCACCTTGAAAGATTATCTATACGGACATGGTGTGGATATCGAAAACAAGGCACTAGAAATGAAGTACGAGGGAAATATTATTGTTCTTGATGATCGTTCGTATTTGTGGGCTGCTGGCATTGAGGAAGGCACATGTTTATCCCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

4.61

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 4 - 71 3.4e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 285
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 295
AjiI CACGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 2 cut(s) 121, 126
AluI AGCT 2 cut(s) 121, 126
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 145, 398
AsuHPI GGTGA 1 cut(s) 193
BalI TGGCCA 1 cut(s) 287
BbvI GCAGC 2 cut(s) 132, 385
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 431
BfaI CTAG 1 cut(s) 341
BisI GCNGC 2 cut(s) 146, 399
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 2 cut(s) 147, 400
Bme1390I CCNGG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 252, 429
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 231
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 2 cut(s) 252, 429
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 132, 385
BshFI GGCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 379
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 252, 429
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 55, 166, 283
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 122
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 132, 385
BsuRI GGCC 1 cut(s) 287
BtrI CACGTC 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 188, 314, 420
CviJI RGCY 6 cut(s) 121, 126, 145, 239, 287, 398
CviKI_1 RGCY 6 cut(s) 121, 126, 145, 239, 287, 398
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 252
Eco32I GATATC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 191, 317, 423
FaiI YATR 6 cut(s) 32, 59, 189, 307, 315, 421
FaqI GGGAC 1 cut(s) 151
FatI CATG 3 cut(s) 187, 313, 419
Fnu4HI GCNGC 2 cut(s) 146, 399
Fsp4HI GCNGC 2 cut(s) 146, 399
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 146, 399
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 232
Hin1II CATG 3 cut(s) 191, 317, 423
HinfI GANTC 2 cut(s) 37, 93
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 213, 437
Hpy188III TCNNGA 2 cut(s) 232, 374
HpyAV CCTTC 2 cut(s) 218, 407
HpyCH4III ACNGT 3 cut(s) 55, 166, 283
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 34, 61, 148, 158, 169, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 191, 317, 423
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 117, 245, 257, 387, 416
Lsp1109I GCAGC 2 cut(s) 132, 385
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 3 cut(s) 26, 29, 284
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 2 cut(s) 68, 216
MluNI TGGCCA 1 cut(s) 287
MnlI CCTC 6 cut(s) 13, 83, 209, 215, 349, 403
Mox20I TGGCCA 1 cut(s) 287
MroI TCCGGA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 379
NlaIII CATG 3 cut(s) 191, 317, 423
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 423
PciI ACATGT 1 cut(s) 419
PfeI GAWTC 2 cut(s) 37, 93
PkrI GCNGC 2 cut(s) 147, 400
PscI ACATGT 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 146, 399
Sau3AI GATC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 431
SetI ASST 4 cut(s) 123, 128, 143, 293
SfaNI GCATC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 2 cut(s) 68, 216
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 55, 166, 283
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 327
TasI AATT 2 cut(s) 68, 216
TfiI GAWTC 2 cut(s) 37, 93
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 145, 398
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 285, 362
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 286
XceI RCATGY 1 cut(s) 423
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.