Rorug07G0089000

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
7012379 .. 7013040
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0089000.1

Sequence Viewer

Length: 348 bp
ATGTGGGAGTCACAGGACTTGAATGATGGCCCTACACGGTATCAGGACTGGAATGATAGCTATTGGATGAAACTACAACCTACACAGCGACATGGCAACCAGCCTTCTAGGCAAGCTTTGTGGACTTACGCCTACAACATGAGGAACATAATCAAAGGTGAAAATGTTGCTTTGAAGCTTGCCCCAGCTGATAATAGGAAGATTGAGGATGCCATTGATAGCTGGATTCAATACGTAGCTAGCAATCAACTTACAGAAGAGGAATATGATATCAAGCTGAAGGAGCTCGATAGCATTTGCACCCCTATATTAATCAACTTACAGAATAGGAATATAATATCAAGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.55

Weight (kDa)

4.88

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 299
AgsI TTSAA 3 cut(s) 22, 175, 230
AluBI AGCT 9 cut(s) 60, 116, 178, 188, 222, 239, 277, 286, 345
AluI AGCT 9 cut(s) 60, 116, 178, 188, 222, 239, 277, 286, 345
Alw21I GWGCWC 1 cut(s) 288
AoxI GGCC 1 cut(s) 28
AseI ATTAAT 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 170
AsuNHI GCTAGC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 1 cut(s) 20
BfaI CTAG 2 cut(s) 108, 240
BglI GCCNNNNNGGC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 72, 214
BseNI ACTGG 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 288
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 288
BspANI GGCC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 114, 180, 241
BstF5I GGATG 2 cut(s) 72, 214
BstMWI GCNNNNNNNGC 2 cut(s) 109, 283
BstSNI TACGTA 1 cut(s) 235
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 72, 214
Cac8I GCNNGC 3 cut(s) 114, 180, 241
Cfr13I GGNCC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 2 cut(s) 92, 139
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 286
Eco105I TACGTA 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 286
EcoRV GATATC 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 2 cut(s) 95, 142
FaiI YATR 6 cut(s) 93, 140, 149, 267, 308, 335
FatI CATG 2 cut(s) 91, 138
FokI GGATG 2 cut(s) 79, 221
FriOI GRGCYC 1 cut(s) 288
FspBI CTAG 2 cut(s) 108, 240
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 2 cut(s) 95, 142
HindIII AAGCTT 2 cut(s) 114, 176
HinfI GANTC 2 cut(s) 8, 226
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 2 cut(s) 114, 274
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 283
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 95, 142
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 29, 34, 113, 198, 208
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 108, 240
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 2 cut(s) 211, 269
MhlI GDGCHC 1 cut(s) 288
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 3 cut(s) 135, 199, 253
MseI TTAA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 109, 283
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 95, 142
NmuCI GTSAC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 226
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 199
SnaBI TACGTA 1 cut(s) 235
SspMI CTAG 2 cut(s) 108, 240
SstI GAGCTC 1 cut(s) 288
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 288
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseFI GTSAC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 311
XspI CTAG 2 cut(s) 108, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.