Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442685.1

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1122

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

agtacaacggtgcctccaaattctgatgttgatgaacatccacaagatactttcaccaaagaaagtggacggacaatagaggagtgcaagcttagagttgtctatttaactccgggttcaggtcaaggaaactcagaagacgaagcttctatgcgtggtcttgataccaattttgatcaggctttccagtgtctcaaggaagaaacagatttagctgctggacaaacacatacacttttcatctcttgcaagccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

85

Amino Acids

9.32

Weight (kDa)

4.46

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	91, 146, 215
AluI	AGCT	3 cut(s)	91, 146, 215
Alw26I	GTCTC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	36
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	89, 251
BstDEI	CTNAG	2 cut(s)	92, 133
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	89, 251
Csp6I	GTAC	1 cut(s)	3
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviJI	RGCY	5 cut(s)	91, 146, 182, 215, 253
CviKI_1	RGCY	5 cut(s)	91, 146, 182, 215, 253
CviQI	GTAC	1 cut(s)	3
DdeI	CTNAG	2 cut(s)	92, 133
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
FaiI	YATR	3 cut(s)	152, 231, 256
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HapII	CCGG	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	89, 144
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	25, 136
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	87, 249
HpyF3I	CTNAG	2 cut(s)	92, 133
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	105, 126, 164, 200, 204
Lsp1109I	GCAGC	1 cut(s)	202
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	149, 212
MluCI	AATT	2 cut(s)	19, 169
MnlI	CCTC	2 cut(s)	24, 73
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	4
RsaNI	GTAC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	4 cut(s)	93, 124, 148, 217
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	19, 169
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	2 cut(s)	19, 169
TatI	WGTACW	1 cut(s)	2
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	48, 229
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.