Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Forward (+)

22940218 .. 22943355

Gene Structure 3138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGCATAAATGGAAGAGACGGGTGTGGTAAAGGAAGAGAACCGTTCTTATCTTGCTGTTCGTCTTTTAAGAGTGACGGTGGTGGTTTTCACTTGATCTCTGTTCATCCCGATGAGCTCAGATTTCCATTTGAACTGAAAAAGGAAAGCTTTTGTGATCTAAAAGTTGTCAATAATACAGAACACCATGTAGCTTTCAAGGTTAAAACCAGTGCACCTATGAAGTTCTTTGTACGGCCCAATATGGGGGTTATAAAGGCTCAGGACTCATGTATCATCAGAGTCAACCTCCGTGGCCAACGAAAATATCCTCCAAATATGGAGTGCAAAGATAAGTTTCTCCTACAGAGCACAATAGTGCCTCCAAATTCTGATTTTGATGAGCTTCCAAAATATACCTTCACCGAGGGAATCGGAAGGACAATAGAGGAATGCAAGTTTAGGGTTGTGTATATCTATCCGGGTGCAGTTCACCTACAGAATTCTTTGCAGCGCCTGAAGGAAGAAAGAGATTCAGCTGTTAAACAAACACAGATACTTCAAGAGGAACTGGATATCCTGAAGAGGCAAAGATCTCGGAAAGGTGACCAAGGCTTTTTCTTCACCTTTGGAATTTCTGGTTTGGACAAAGATTCAGATCTTGGTGGTCGTCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

219

Amino Acids

24.92

Weight (kDa)

8.87

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	33 - 125	1.4e-25	MSP (Major sperm protein) domain
Cep192_D6	PF22076	33 - 100	1.4e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	3 cut(s)	367, 481, 612
AcuI	CTGAAG	2 cut(s)	518, 581
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	245, 246
AgsI	TTSAA	3 cut(s)	134, 199, 542
AleI	CACNNNNGTG	1 cut(s)	356
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	5 cut(s)	118, 150, 194, 385, 518
AluI	AGCT	5 cut(s)	118, 150, 194, 385, 518
Alw21I	GWGCWC	3 cut(s)	120, 217, 353
Alw26I	GTCTC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	2 cut(s)	236, 295
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	3 cut(s)	367, 481, 612
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	4 cut(s)	394, 464, 595, 596
BaeGI	GKGCMC	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BalI	TGGCCA	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	3 cut(s)	120, 217, 353
BbvI	GCAGC	1 cut(s)	502
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	344, 476
BfoI	RGCGCY	1 cut(s)	496
BglII	AGATCT	2 cut(s)	572, 637
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	292, 405, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 246
Bse1I	ACTGG	2 cut(s)	210, 555
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	292, 405, 589
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	245, 246
BseMII	CTCAG	2 cut(s)	133, 275
BseNI	ACTGG	2 cut(s)	210, 555
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	238, 297
BsiHKAI	GWGCWC	3 cut(s)	120, 217, 353
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	245, 246
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	238, 297
Bsp1286I	GDGCHC	3 cut(s)	120, 217, 353
Bsp143I	GATC	4 cut(s)	96, 157, 572, 637
BspANI	GGCC	2 cut(s)	238, 297
BspCNI	CTCAG	2 cut(s)	132, 274
BspHI	TCATGA	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	210, 555
BssECI	CCNNGG	3 cut(s)	292, 405, 589
BssMI	GATC	4 cut(s)	96, 157, 572, 637
BssT1I	CCWWGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	45, 80
Bst6I	CTCTTC	3 cut(s)	10, 31, 557
BstDEI	CTNAG	2 cut(s)	119, 261
BstDSI	CCRYGG	1 cut(s)	292
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	4 cut(s)	99, 160, 575, 640
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	96, 157, 572, 637
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	2 cut(s)	344, 476
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	572, 637
BstYI	RGATCY	2 cut(s)	572, 637
BsuRI	GGCC	2 cut(s)	238, 297
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	496
CciI	TCATGA	1 cut(s)	656
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	3 cut(s)	188, 270, 657
CviJI	RGCY	9 cut(s)	118, 150, 194, 238, 260, 297, 385, 518, 594
CviKI_1	RGCY	9 cut(s)	118, 150, 194, 238, 260, 297, 385, 518, 594
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	119, 261
DpnI	GATC	4 cut(s)	98, 159, 574, 639
DpnII	GATC	4 cut(s)	96, 157, 572, 637
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	3 cut(s)	10, 31, 557
EarI	CTCTTC	3 cut(s)	10, 31, 557
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	518, 581
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	191, 273, 660
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	187, 269, 656
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	491
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	238, 297
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	191, 273, 660
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	5 cut(s)	266, 282, 411, 512, 632
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	4 cut(s)	394, 464, 595, 596
Hpy166II	GTNNAC	3 cut(s)	215, 286, 472
Hpy188I	TCNGA	6 cut(s)	122, 281, 373, 416, 579, 637
Hpy188III	TCNNGA	5 cut(s)	110, 263, 542, 559, 657
Hpy8I	GTNNAC	3 cut(s)	215, 286, 472
HpyAV	CCTTC	3 cut(s)	409, 411, 493
HpyCH4III	ACNGT	2 cut(s)	45, 80
HpyCH4V	TGCA	6 cut(s)	6, 215, 327, 435, 467, 490
HpyF3I	CTNAG	2 cut(s)	119, 261
Hsp92II	CATG	3 cut(s)	191, 273, 660
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	96, 157, 572, 637
LpnPI	CCDG	7 cut(s)	223, 248, 474, 509, 536, 572, 603
Lsp1109I	GCAGC	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	74, 584
MalI	GATC	4 cut(s)	98, 159, 574, 639
MboI	GATC	4 cut(s)	96, 157, 572, 637
MboII	GAAGA	5 cut(s)	27, 48, 515, 574, 592
MflI	RGATCY	2 cut(s)	572, 637
MhlI	GDGCHC	3 cut(s)	120, 217, 353
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	367, 481, 612
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	260, 291
MnlI	CCTC	7 cut(s)	299, 321, 372, 400, 421, 538, 558
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	69, 204, 522
MslI	CAYNNNNRTG	2 cut(s)	111, 356
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	96, 157, 572, 637
NlaIII	CATG	3 cut(s)	191, 273, 660
NmuCI	GTSAC	2 cut(s)	74, 584
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	656
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	411, 512, 632
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	260, 290
PpsI	GAGTC	2 cut(s)	260, 290
PsiI	TTATAA	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	584
PspPI	GGNCC	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	572, 637
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	111, 356
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	69, 204, 522
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	4 cut(s)	96, 157, 572, 637
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	260, 291
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	3 cut(s)	120, 217, 353
SfcI	CTRYAG	2 cut(s)	344, 476
SmiMI	CAYNNNNRTG	2 cut(s)	111, 356
Sse9I	AATT	3 cut(s)	367, 481, 612
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	45, 80
TasI	AATT	3 cut(s)	367, 481, 612
TfiI	GAWTC	3 cut(s)	411, 512, 632
Tru1I	TTAA	3 cut(s)	69, 204, 522
Tru9I	TTAA	3 cut(s)	69, 204, 522
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	74, 584
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	74, 584
TspDTI	ATGAA	2 cut(s)	95, 236
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	213
XapI	RAATTY	3 cut(s)	367, 481, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.