Rw7G018990

Vesicle-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003766
Physical Location & Seq
Forward (+)
20769135 .. 20770816
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018990.1

Sequence Viewer

Length: 345 bp
ATGGAGTGCAAAGATAAGTTTCTCCTACAGAGCACAATAGTGCCTCCAAATTCTGATTTTGATGAGCTTCCAAAATATACCTTCACCGATGGAATCGGAAGGACAATAGAGGAATGCAAGTTTAGGGTTGTATATATCTATCCTGGTGCAGTTCACCTACAGAATTCTTTGCAGCGCCTGAAGGAAGAAAGAGATTCAGCTGTTAAACAAACACAGATACTTCAAGAGGAACTGGATATCCTGAAGAGGCAAAGATCTCGGAAAGGGTTTGGACAAAGATTCAGATCTTGGTGGTCGTCCATCATGAGTGCCGGTTGTGGATATACGGAAGATGCCAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm

Protein Analysis

114

Amino Acids

13.3

Weight (kDa)

8.46

Isoelectric Point (pI)

74.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 49, 163
AcuI CTGAAG 2 cut(s) 200, 263
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 142
AleI CACNNNNGTG 1 cut(s) 38
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 67, 200
AluI AGCT 2 cut(s) 67, 200
Alw21I GWGCWC 1 cut(s) 35
AlwNI CAGNNNCTG 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 49, 163
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 76, 146
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 83, 308
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 26, 158
BfoI RGCGCY 1 cut(s) 178
BglII AGATCT 2 cut(s) 254, 284
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 283
BseBI CCWGG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 283
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 312
BsmI GAATGC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 254, 284
BspHI TCATGA 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 2 cut(s) 254, 284
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 257, 287
BstMBI GATC 2 cut(s) 254, 284
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 26, 158
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 254, 284
BstYI RGATCY 2 cut(s) 254, 284
CaiI CAGNNNCTG 1 cut(s) 178
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 311
CviAII CATG 1 cut(s) 304
CviJI RGCY 2 cut(s) 67, 200
CviKI_1 RGCY 2 cut(s) 67, 200
DpnI GATC 2 cut(s) 256, 286
DpnII GATC 2 cut(s) 254, 284
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 200, 263
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 238
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 78, 133, 135, 305, 324, 343
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 178
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 3 cut(s) 93, 194, 279
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 76, 146
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 55, 98, 261, 284
Hpy188III TCNNGA 3 cut(s) 224, 241, 304
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 91, 93, 175
HpyCH4V TGCA 4 cut(s) 9, 117, 149, 172
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 254, 284
LpnPI CCDG 6 cut(s) 129, 156, 191, 218, 254, 325
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 322
MalI GATC 2 cut(s) 256, 286
MboI GATC 2 cut(s) 254, 284
MboII GAAGA 3 cut(s) 197, 256, 341
MflI RGATCY 2 cut(s) 254, 284
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 49, 163
MnlI CCTC 4 cut(s) 54, 103, 220, 240
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 144
NdeII GATC 2 cut(s) 254, 284
NlaIII CATG 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 38
PagI TCATGA 1 cut(s) 303
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 93, 194, 279
PkrI GCNGC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 254, 284
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 254, 284
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 69, 83, 159, 202
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 26, 158
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 49, 163
StyD4I CCNGG 1 cut(s) 142
TasI AATT 2 cut(s) 49, 163
TfiI GAWTC 3 cut(s) 93, 194, 279
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 341
XapI RAATTY 2 cut(s) 49, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.