Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Forward (+)

20772543 .. 20776496

Gene Structure 3954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGTGCCGGTGGTGGTAATCAGTTGATCTCTGTTCTTCCGGAGGAGCTCAGATTTCAATTTGAGCTGGAAAAGCAAAGCTTTTGTGATCTAAAAGTCATCAACAACACAGAAAACCATGTTGCTTTCAAGGTTAAAACCACTTCCCCTAAGAAGTACTTTGTACGGCCCAACACTGGTGTTATACAGGCTTGGGACTCATGTGTAATCAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCAGACATGCAGTGCAAAGATAAATTTCTCCTACAGAGTACAACGGTGCCTCAAAATTCTGATGTTGATGAACTTCCACAAGATACTTTCACCAAAGAAAGTGGAAGGACAATAGAGGAGTGCAAGCTTAGAGTTGTCTATTTAACTCCGGGTTCAGGTCAAGGAAACTCAGAAGACGGAGCTTCTATGCGTGGTCTTGATACCAATTCTAATCAGGCTTTCCAGCGCCTGAAGGAAGAAAGAGATTCAGCTGTTAGACAAACACAGACACTTCAACAGGAACTGGACATACTGAAGAGGCGGAGATACCGGAAAGGTGACCCAGGCTTTTCCTTCACCTTTGCAATTTTTGTGGGACTTATTGGACTCATGGTTGGCTTCCTCTTGAATCTGTCATTGTCTTCACCACCCATAGAAGCTTCATCATCCACAGAATCTTCACCATTAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

232

Amino Acids

26.01

Weight (kDa)

5.64

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cep192_D6	PF22076	10 - 77	1.3e-06	Cep192 domain 6
Motile_Sperm	PF00635	11 - 109	2.7e-29	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	266, 298
AcuI	CTGAAG	2 cut(s)	494, 557
AfaI	GTAC	3 cut(s)	158, 165, 283
AfiI	CCNNNNNNNGG	2 cut(s)	176, 398
AgsI	TTSAA	4 cut(s)	59, 130, 518, 631
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	7 cut(s)	49, 67, 81, 370, 425, 494, 662
AluI	AGCT	7 cut(s)	49, 67, 81, 370, 425, 494, 662
Alw21I	GWGCWC	1 cut(s)	51
AlwNI	CAGNNNCTG	2 cut(s)	472, 526
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	266, 298
AseI	ATTAAT	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	6 cut(s)	208, 325, 571, 572, 639, 675
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	2 cut(s)	423, 636
Bbv12I	GWGCWC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	472
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	393, 567
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	393, 567
BpiI	GAAGAC	2 cut(s)	423, 636
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpmI	CTGGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	2 cut(s)	40, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 398
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	181, 531
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	668
BseLI	CCNNNNNNNGG	2 cut(s)	176, 398
BseMII	CTCAG	2 cut(s)	64, 426
BseNI	ACTGG	2 cut(s)	181, 531
BseRI	GAGGAG	2 cut(s)	59, 374
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	4 cut(s)	9, 41, 392, 553
BslFI	GGGAC	2 cut(s)	209, 612
BslI	CCNNNNNNNGG	2 cut(s)	176, 398
BsmFI	GGGAC	2 cut(s)	209, 612
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	27, 88
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	63, 425
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	181, 531
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	2 cut(s)	27, 88
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	4 cut(s)	50, 150, 371, 412
BstEII	GGTNACC	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	668
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	2 cut(s)	30, 91
BstMBI	GATC	2 cut(s)	27, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	391, 565
BstSFI	CTRYAG	1 cut(s)	275
BstV2I	GAAGAC	2 cut(s)	423, 636
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	174, 260
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	2 cut(s)	472, 526
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	157, 164, 282
CspCI	CAANNNNNGTGG	4 cut(s)	325, 360, 576, 611
CviAII	CATG	4 cut(s)	119, 201, 250, 613
CviQI	GTAC	3 cut(s)	157, 164, 282
DdeI	CTNAG	4 cut(s)	50, 150, 371, 412
DpnI	GATC	2 cut(s)	29, 90
DpnII	GATC	2 cut(s)	27, 88
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	559
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	494, 557
Eco91I	GGTNACC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	4 cut(s)	122, 204, 253, 616
FaiI	YATR	8 cut(s)	120, 185, 202, 251, 431, 533, 614, 656
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 143, 175
FaqI	GGGAC	2 cut(s)	209, 612
FatI	CATG	4 cut(s)	118, 200, 249, 612
FokI	GGATG	1 cut(s)	655
FriOI	GRGCYC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	4 cut(s)	9, 41, 392, 553
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	122, 204, 253, 616
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HindIII	AAGCTT	3 cut(s)	79, 368, 660
HinfI	GANTC	6 cut(s)	197, 213, 488, 609, 631, 677
HpaII	CCGG	4 cut(s)	9, 41, 392, 553
HphI	GGTGA	6 cut(s)	208, 325, 571, 572, 639, 675
Hpy188I	TCNGA	4 cut(s)	53, 212, 304, 415
Hpy188III	TCNNGA	4 cut(s)	41, 245, 440, 628
HpyAV	CCTTC	3 cut(s)	342, 469, 586
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	253, 258, 366, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	4 cut(s)	50, 150, 371, 412
Hsp92II	CATG	4 cut(s)	122, 204, 253, 616
HspAI	GCGC	1 cut(s)	469
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	27, 88
LmnI	GCTCC	2 cut(s)	46, 422
MaeIII	GTNAC	2 cut(s)	214, 560
MalI	GATC	2 cut(s)	29, 90
MboI	GATC	2 cut(s)	27, 88
MboII	GAAGA	6 cut(s)	29, 428, 491, 550, 636, 672
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	5 cut(s)	59, 266, 298, 448, 588
MlyI	GAGTC	3 cut(s)	191, 222, 603
MnlI	CCTC	7 cut(s)	37, 230, 252, 303, 352, 534, 635
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	3 cut(s)	135, 386, 689
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	4 cut(s)	9, 41, 392, 553
MspR9I	CCNGG	2 cut(s)	393, 567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	27, 88
NlaIII	CATG	4 cut(s)	122, 204, 253, 616
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	214, 560
NspI	RCATGY	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	488, 631, 677
PleI	GAGTC	3 cut(s)	191, 221, 603
PpsI	GAGTC	3 cut(s)	191, 221, 603
PshBI	ATTAAT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	565
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstNI	CAGNNNCTG	2 cut(s)	472, 526
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	158, 165, 283
RsaNI	GTAC	3 cut(s)	157, 164, 282
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	135, 386, 689
Sau3AI	GATC	2 cut(s)	27, 88
Sau96I	GGNCC	1 cut(s)	168
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	3 cut(s)	191, 222, 603
ScrFI	CCNGG	2 cut(s)	393, 567
SduI	GDGCHC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	59, 266, 298, 448, 588
SsiI	CCGC	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	391, 565
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	5 cut(s)	59, 266, 298, 448, 588
TatI	WGTACW	2 cut(s)	156, 281
TfiI	GAWTC	3 cut(s)	488, 631, 677
Tru1I	TTAA	3 cut(s)	135, 386, 689
Tru9I	TTAA	3 cut(s)	135, 386, 689
TscAI	CASTG	2 cut(s)	181, 260
TseFI	GTSAC	2 cut(s)	214, 560
Tsp45I	GTSAC	2 cut(s)	214, 560
TspDTI	ATGAA	2 cut(s)	327, 654
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	181, 260
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	2 cut(s)	266, 298
XceI	RCATGY	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.