Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Reverse (-)

46552369 .. 46555669

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGCATAAATGGAAGAGACGGGTGTGGTAAAGGAAGAGAACCGTTCTTATCTTGCTGTTCGTCTTTTAAGAGTGACGGTGGTAGTTTTCACTTGATCTCTGTTCATCCCGATGAGCTCAGATTTCCATTCAACCTCCATGGCCAACGAAAATATCCTCCAAATATGGAGTGCAAAGATAAGTTTCTCCCACAGAGCACAATAGTGCCTCCAAATTCTGATTTTGATGAGCTTCCAAAATATACCTTCACCGAGGGAATCGGAAGGACAATAGAGGAATGCAAGTTTAGGGTTGTGTATATCTATCCGGGTGCAGTTCAACTACAGAATTCTTTGCAGCGCGTGAAGGAAGAAAGAGATTCAGCTGTTAAGCAAACACAGATACTTCAAGAGGAACTGGGTTTGGACAAAGATTCAGATCTTGGTGGTCGTCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

5.93

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	214, 328
AgsI	TTSAA	3 cut(s)	133, 320, 389
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	3 cut(s)	118, 232, 365
AluI	AGCT	3 cut(s)	118, 232, 365
Alw21I	GWGCWC	2 cut(s)	120, 200
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	214, 328
AspLEI	GCGC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	120, 200
BbvI	GCAGC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	139, 252
Bse1I	ACTGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	139, 252
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	120, 200
BsiSI	CCGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	120, 200
Bsp143I	GATC	2 cut(s)	96, 418
Bsp19I	CCATGG	1 cut(s)	139
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	139, 252
BssMI	GATC	2 cut(s)	96, 418
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	45, 80
Bst6I	CTCTTC	2 cut(s)	10, 31
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	99, 421
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	96, 418
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	437
CfoI	GCGC	1 cut(s)	342
CviAII	CATG	2 cut(s)	140, 438
CviJI	RGCY	4 cut(s)	118, 144, 232, 365
CviKI_1	RGCY	4 cut(s)	118, 144, 232, 365
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	2 cut(s)	98, 420
DpnII	GATC	2 cut(s)	96, 418
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	10, 31
EarI	CTCTTC	2 cut(s)	10, 31
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	143, 441
FaiI	YATR	6 cut(s)	8, 141, 167, 243, 300, 439
FatI	CATG	2 cut(s)	139, 437
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	338
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	308
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	143, 441
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	258, 359, 413
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	122, 220, 263, 418
Hpy188III	TCNNGA	3 cut(s)	110, 389, 438
HpyAV	CCTTC	3 cut(s)	256, 258, 340
HpyCH4III	ACNGT	2 cut(s)	45, 80
HpyCH4V	TGCA	5 cut(s)	6, 174, 282, 314, 337
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	143, 441
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	96, 418
LpnPI	CCDG	2 cut(s)	321, 383
Lsp1109I	GCAGC	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	98, 420
MboI	GATC	2 cut(s)	96, 418
MboII	GAAGA	3 cut(s)	27, 48, 362
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	120, 200
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	214, 328
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	6 cut(s)	146, 168, 219, 247, 268, 385
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	2 cut(s)	69, 369
MslI	CAYNNNNRTG	2 cut(s)	111, 203
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	284
MvnI	CGCG	1 cut(s)	342
NciI	CCSGG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	96, 418
NlaIII	CATG	2 cut(s)	143, 441
NmuCI	GTSAC	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	437
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	258, 359, 413
PkrI	GCNGC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	111, 203
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	69, 369
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	96, 418
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	120, 200
SetI	ASST	5 cut(s)	120, 138, 234, 248, 367
SfcI	CTRYAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	2 cut(s)	111, 203
Sse9I	AATT	2 cut(s)	214, 328
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	45, 80
TasI	AATT	2 cut(s)	214, 328
TfiI	GAWTC	3 cut(s)	258, 359, 413
Tru1I	TTAA	2 cut(s)	69, 369
Tru9I	TTAA	2 cut(s)	69, 369
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	2 cut(s)	214, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.