Prupe.5G058700_v2.0.a1

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
6337290 .. 6341802
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G058700.3

Sequence Viewer

Length: 672 bp
ATGAGTGCTGGTGGTGGTAATCAGATGATATCTGTTGTTCCGGATGAGCTCAAATTCCAATTTGAGCTGGAGAAGCAAAGCTTTTGTGATCTAAAAGTTGTCAACAACACAGAACACCATGTTGCTTTTAAGGTTAAAACCACTTCACCTAAGAAGTACTTTGTACGACCCAACACTGGTGTTATACAGGCTTGGGACTCATGTGTCATCAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCAGATATGCAGTGCAAAGATAAATTTCTCCTACAGAGTACAACAGTGCCTCCAAATACTGATGTTGATGACCTCCCGCAAGATACTTTCACCAAGGAAAGTGGAAGGGCATTAGAGGAGTGCAAGCTTAGAGTTGTGTATATGACTCCTGGTTTAGCTCAAGGAACCTCAGAAGATGAAGCTTTAAGGAGCTCCATGAGCGGTCTTGATACTAATTCAAATCAGGCTTTCCAGCGCCTGAAGGATGAAAGAGATGCAGCTGTTAGACAAACACAGCAACTTCAACAGGAACTGGATATACTGAAGAGGCGAAGATTTCGGAAAGGTGACCCAGGCTTCTCCTTCACCTTTGCAATTTTTGTGGGACTCATTGGACTCATGGTTGGCTTCCTCTTGAACCTTTCATTATCTTCACCATCTACAGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

224

Amino Acids

25.09

Weight (kDa)

6.19

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 2 cut(s) 320, 444
AcsI RAATTY 2 cut(s) 53, 266
AcuI CTGAAG 2 cut(s) 503, 566
AfaI GTAC 3 cut(s) 158, 165, 283
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 462, 527, 640
AjnI CCWGG 2 cut(s) 391, 574
AluBI AGCT 8 cut(s) 49, 67, 81, 370, 401, 425, 435, 503
AluI AGCT 8 cut(s) 49, 67, 81, 370, 401, 425, 435, 503
Alw21I GWGCWC 2 cut(s) 51, 437
AlwNI CAGNNNCTG 2 cut(s) 481, 535
Aor13HI TCCGGA 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 2 cut(s) 53, 266
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 6 cut(s) 138, 208, 325, 580, 581, 648
BanII GRGCYC 2 cut(s) 51, 437
Bbv12I GWGCWC 2 cut(s) 51, 437
BbvI GCAGC 1 cut(s) 512
BccI CCATC 1 cut(s) 667
BciT130I CCWGG 2 cut(s) 393, 576
BfmI CTRYAG 2 cut(s) 275, 663
BfoI RGCGCY 1 cut(s) 481
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 393, 576
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 2 cut(s) 393, 576
BmsI GCATC 1 cut(s) 487
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 2 cut(s) 89, 228
BpuEI CTTGAG 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 336, 574
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 181, 540
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 393, 576
BseDI CCNNGG 2 cut(s) 336, 574
BseGI GGATG 2 cut(s) 49, 493
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 181, 540
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 512
BsiHKAI GWGCWC 2 cut(s) 51, 437
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 209, 621
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 209, 621
Bsp1286I GDGCHC 2 cut(s) 51, 437
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 320, 444
BspCNI CTCAG 1 cut(s) 425
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 444
BsrI ACTGG 2 cut(s) 181, 540
BssECI CCNNGG 2 cut(s) 336, 574
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 393, 576
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 3 cut(s) 150, 371, 412
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 2 cut(s) 49, 493
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 73, 441
BstNI CCWGG 2 cut(s) 393, 576
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 391, 574
BstSFI CTRYAG 2 cut(s) 275, 663
BstV1I GCAGC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 49, 493
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 3 cut(s) 174, 260, 294
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 2 cut(s) 481, 535
CfoI GCGC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 157, 164, 282
CspCI CAANNNNNGTGG 4 cut(s) 325, 360, 585, 620
CviAII CATG 4 cut(s) 119, 201, 439, 622
CviQI GTAC 3 cut(s) 157, 164, 282
DdeI CTNAG 3 cut(s) 150, 371, 412
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Ecl136II GAGCTC 2 cut(s) 49, 435
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 51, 437
Eco32I GATATC 1 cut(s) 30
Eco53kI GAGCTC 2 cut(s) 49, 435
Eco57I CTGAAG 2 cut(s) 503, 566
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 2 cut(s) 49, 435
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 391, 574
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 2 cut(s) 51, 437
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 122, 204, 442, 625
FaiI YATR 9 cut(s) 120, 185, 202, 251, 384, 386, 440, 542, 623
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 143, 175
FaqI GGGAC 2 cut(s) 209, 621
FatI CATG 4 cut(s) 118, 200, 438, 621
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 2 cut(s) 56, 500
FriOI GRGCYC 2 cut(s) 51, 437
Fsp4HI GCNGC 1 cut(s) 501
GlaI GCGC 1 cut(s) 479
GluI GCNGC 1 cut(s) 501
GsuI CTGGAG 2 cut(s) 89, 228
HaeII RGCGCY 1 cut(s) 481
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 480
Hin1II CATG 4 cut(s) 122, 204, 442, 625
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 3 cut(s) 79, 368, 423
HinfI GANTC 5 cut(s) 197, 213, 388, 609, 618
HpaII CCGG 1 cut(s) 41
HphI GGTGA 6 cut(s) 138, 208, 325, 580, 581, 648
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 4 cut(s) 24, 212, 415, 564
Hpy188III TCNNGA 4 cut(s) 41, 245, 449, 637
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 342, 478, 595
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 5 cut(s) 253, 258, 366, 500, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 441
HpyF3I CTNAG 3 cut(s) 150, 371, 412
Hsp92II CATG 4 cut(s) 122, 204, 442, 625
HspAI GCGC 1 cut(s) 478
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 432, 440
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 214, 569
MalI GATC 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 444
MboI GATC 1 cut(s) 88
MboII GAAGA 4 cut(s) 428, 559, 567, 645
MhlI GDGCHC 2 cut(s) 51, 437
MluCI AATT 5 cut(s) 53, 59, 266, 457, 597
MlyI GAGTC 5 cut(s) 191, 222, 382, 603, 612
MnlI CCTC 8 cut(s) 230, 252, 303, 326, 352, 421, 543, 644
MroI TCCGGA 1 cut(s) 40
MseI TTAA 3 cut(s) 129, 135, 428
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 393, 576
MvaI CCWGG 2 cut(s) 393, 576
MwoI GCNNNNNNNGC 2 cut(s) 73, 441
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 122, 204, 442, 625
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 2 cut(s) 214, 569
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 5 cut(s) 191, 221, 382, 603, 612
PpsI GAGTC 5 cut(s) 191, 221, 382, 603, 612
Psp124BI GAGCTC 2 cut(s) 51, 437
Psp6I CCWGG 2 cut(s) 391, 574
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 2 cut(s) 391, 574
PspN4I GGNNCC 1 cut(s) 409
PsrI GAACNNNNNNTAC 2 cut(s) 525, 557
PstNI CAGNNNCTG 2 cut(s) 481, 535
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 3 cut(s) 158, 165, 283
RsaNI GTAC 3 cut(s) 157, 164, 282
SacI GAGCTC 2 cut(s) 51, 437
SaqAI TTAA 3 cut(s) 129, 135, 428
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 5 cut(s) 191, 222, 382, 603, 612
ScrFI CCNGG 2 cut(s) 393, 576
SduI GDGCHC 2 cut(s) 51, 437
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 2 cut(s) 275, 663
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 5 cut(s) 53, 59, 266, 457, 597
SsiI CCGC 2 cut(s) 320, 444
SstI GAGCTC 2 cut(s) 51, 437
StyD4I CCNGG 2 cut(s) 391, 574
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 289
TasI AATT 5 cut(s) 53, 59, 266, 457, 597
TatI WGTACW 2 cut(s) 156, 281
Tru1I TTAA 3 cut(s) 129, 135, 428
Tru9I TTAA 3 cut(s) 129, 135, 428
TscAI CASTG 3 cut(s) 181, 260, 294
TseFI GTSAC 2 cut(s) 214, 569
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 2 cut(s) 214, 569
TspDTI ATGAA 3 cut(s) 435, 504, 636
TspRI CASTG 3 cut(s) 181, 260, 294
XapI RAATTY 2 cut(s) 53, 266
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.