Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013888.1

Orthogroup ID

OG0003766

Physical Location & Seq

Genomic Coordinates Reverse (-)

1202 .. 5651

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 868 bp

aaattggctctctctcggaccgacacccgatcttggtggcccaatttggaccgagcaatccgtaccattcttcattcctccacctacgcttcttcctccatgtgttagtcccggtttgagattgtttggtgaattgcttggaaagttagaaaacagtgttcgtggaatcatgagtgccggtggtggtaatcagttgatctctgttcttccggaggagctcagatttcaatttgagctggaaaagcaaagcttttgtgatctaaaagtcatcaacaacacagaaaaccatgttgctttcaaggttaaaaccacttcccctaagaagtactttgtacggcccaacactggtgttatacaggcttgggactcatgtgtaatcagagtcaccctccaagcccaacgagaatatcctccagacatgcagtgcaaggataaatttctcctacagagtacaacggtgcctcaaaattctgatgttgatgaacttccacaagatactttcaccaaagaaagtggaaggacaatagaggagtgcaagcttagagttgtctatttaactccgggttcaggtcaaggaaactcagaagacggagcttctatgcgtggtcttgataccaattctaatcaggctttccagcgcctgaaggaagaaagagattcagctgttagacaaacacagacacttcaacaggaactggacatactgaagaggcggagataccggaaaggtgacccaggcttttccttcacctttgcaatttttgtgggacttattggactcatggttggcttcctcttgaatctgtcattgtcttcaccacccatagaagcttcatcatccacagaatcttcaccagtaatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

288

Amino Acids

32.01

Weight (kDa)

5.48

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47180 AT5G47180
fragaria_vesca	FvH4_5g20180 FvH4_5g20180 FvH4_5g20180
malus_domestica	MD04G1051600.v1.1 MD06G1048500.v1.1
prunus_persica	Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1 Prupe.5G058700_v2.0.a1
pyrus_communis	pycom04g04530 pycom06g04160
rosa_chinensis	RchiOBHm_Chr7g0205251 RchiOBHm_Chr7g0205261 RchiOBHm_Chr7g0205271
rosa_laevigata	RLG00000003392
rosa_multiflora	Rmu_co8442685.1_g000001 Rmu_sc0013888.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252520 Rroxscaffold_3G00252530
rosa_rugosa	Rorug07G0088800 Rorug07G0088900 Rorug07G0088900 Rorug07G0089000 Rorug07G0089100 Rorug07G0089200
rosa_samantha	Rh7AG219600 Rh7AG219700 Rh7CG232500 Rh7CG232600
rosa_wichuraiana	Rw7G018990 Rw7G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	435, 467
AcuI	CTGAAG	2 cut(s)	663, 726
AfaI	GTAC	4 cut(s)	64, 327, 334, 452
AfiI	CCNNNNNNNGG	3 cut(s)	33, 345, 567
AgsI	TTSAA	4 cut(s)	228, 299, 687, 800
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	7 cut(s)	218, 236, 250, 539, 594, 663, 831
AluI	AGCT	7 cut(s)	218, 236, 250, 539, 594, 663, 831
Alw21I	GWGCWC	1 cut(s)	220
AlwNI	CAGNNNCTG	2 cut(s)	641, 695
Aor13HI	TCCGGA	1 cut(s)	209
AoxI	GGCC	2 cut(s)	38, 336
ApoI	RAATTY	2 cut(s)	435, 467
AspLEI	GCGC	1 cut(s)	640
AspS9I	GGNCC	4 cut(s)	18, 39, 49, 337
AsuC2I	CCSGG	2 cut(s)	112, 562
AsuHPI	GGTGA	7 cut(s)	141, 377, 494, 740, 741, 808, 844
AvaII	GGWCC	2 cut(s)	18, 49
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	592, 805
Bbv12I	GWGCWC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	112, 562
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	641
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	3 cut(s)	112, 562, 736
Bme18I	GGWCC	2 cut(s)	18, 49
BmgT120I	GGNCC	4 cut(s)	18, 39, 49, 337
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	3 cut(s)	112, 562, 736
BpiI	GAAGAC	2 cut(s)	592, 805
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	112, 562
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	2 cut(s)	209, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 345, 567
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	3 cut(s)	350, 700, 855
BseAI	TCCGGA	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	1 cut(s)	837
BseLI	CCNNNNNNNGG	3 cut(s)	33, 345, 567
BseMII	CTCAG	2 cut(s)	233, 595
BseNI	ACTGG	3 cut(s)	350, 700, 855
BseRI	GAGGAG	2 cut(s)	228, 543
BshFI	GGCC	2 cut(s)	40, 338
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	5 cut(s)	112, 178, 210, 561, 722
BslFI	GGGAC	3 cut(s)	94, 378, 781
BslI	CCNNNNNNNGG	3 cut(s)	33, 345, 567
BsmFI	GGGAC	3 cut(s)	94, 378, 781
BsnI	GGCC	2 cut(s)	40, 338
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	29, 196, 257
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	2 cut(s)	40, 338
BspCNI	CTCAG	2 cut(s)	232, 594
BspEI	TCCGGA	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	350, 700, 855
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	3 cut(s)	29, 196, 257
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	2 cut(s)	156, 458
Bst6I	CTCTTC	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	219, 319, 540, 581
BstEII	GGTNACC	1 cut(s)	729
BstF5I	GGATG	1 cut(s)	837
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	3 cut(s)	32, 199, 260
BstMBI	GATC	3 cut(s)	29, 196, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	736
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	110, 560, 734
BstSFI	CTRYAG	1 cut(s)	444
BstV2I	GAAGAC	2 cut(s)	592, 805
BsuRI	GGCC	2 cut(s)	40, 338
BtsCI	GGATG	1 cut(s)	837
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	161, 343, 429
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	2 cut(s)	641, 695
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	18, 39, 49, 337
CpoI	CGGWCCG	1 cut(s)	18
Csp6I	GTAC	4 cut(s)	63, 326, 333, 451
CspCI	CAANNNNNGTGG	4 cut(s)	494, 529, 745, 780
CspI	CGGWCCG	1 cut(s)	18
CviAII	CATG	6 cut(s)	100, 170, 288, 370, 419, 782
CviQI	GTAC	4 cut(s)	63, 326, 333, 451
DdeI	CTNAG	4 cut(s)	219, 319, 540, 581
DpnI	GATC	3 cut(s)	31, 198, 259
DpnII	GATC	3 cut(s)	29, 196, 257
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
EciI	GGCGGA	1 cut(s)	728
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	18, 49
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	663, 726
Eco91I	GGTNACC	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	6 cut(s)	103, 173, 291, 373, 422, 785
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 312, 344
FaqI	GGGAC	3 cut(s)	94, 378, 781
FatI	CATG	6 cut(s)	99, 169, 287, 369, 418, 781
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	40, 338
HapII	CCGG	5 cut(s)	112, 178, 210, 561, 722
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	6 cut(s)	103, 173, 291, 373, 422, 785
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HindIII	AAGCTT	3 cut(s)	248, 537, 829
HinfI	GANTC	7 cut(s)	166, 366, 382, 657, 778, 800, 846
HpaII	CCGG	5 cut(s)	112, 178, 210, 561, 722
HphI	GGTGA	7 cut(s)	141, 377, 494, 740, 741, 808, 844
Hpy188I	TCNGA	5 cut(s)	18, 222, 381, 473, 584
Hpy188III	TCNNGA	5 cut(s)	170, 210, 414, 609, 797
HpyAV	CCTTC	3 cut(s)	511, 638, 755
HpyCH4III	ACNGT	2 cut(s)	156, 458
HpyCH4V	TGCA	4 cut(s)	422, 427, 535, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	4 cut(s)	219, 319, 540, 581
Hsp92II	CATG	6 cut(s)	103, 173, 291, 373, 422, 785
HspAI	GCGC	1 cut(s)	638
Kpn2I	TCCGGA	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	29, 196, 257
LmnI	GCTCC	2 cut(s)	215, 591
MaeIII	GTNAC	2 cut(s)	383, 729
MalI	GATC	3 cut(s)	31, 198, 259
MboI	GATC	3 cut(s)	29, 196, 257
MboII	GAAGA	8 cut(s)	62, 84, 198, 597, 660, 719, 805, 841
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	8 cut(s)	2, 43, 132, 228, 435, 467, 617, 757
MlyI	GAGTC	3 cut(s)	360, 391, 772
MnlI	CCTC	9 cut(s)	88, 106, 206, 399, 421, 472, 521, 703, 804
MroI	TCCGGA	1 cut(s)	209
MseI	TTAA	2 cut(s)	304, 555
MspA1I	CMGCKG	1 cut(s)	663
MspI	CCGG	5 cut(s)	112, 178, 210, 561, 722
MspR9I	CCNGG	3 cut(s)	112, 562, 736
MvaI	CCWGG	1 cut(s)	736
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	2 cut(s)	112, 562
NdeII	GATC	3 cut(s)	29, 196, 257
NlaIII	CATG	6 cut(s)	103, 173, 291, 373, 422, 785
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	2 cut(s)	383, 729
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	4 cut(s)	166, 657, 800, 846
PleI	GAGTC	3 cut(s)	360, 390, 772
PpsI	GAGTC	3 cut(s)	360, 390, 772
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	734
PspEI	GGTNACC	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	4 cut(s)	18, 39, 49, 337
PsrI	GAACNNNNNNTAC	2 cut(s)	685, 717
PstNI	CAGNNNCTG	2 cut(s)	641, 695
PvuII	CAGCTG	1 cut(s)	663
RsaI	GTAC	4 cut(s)	64, 327, 334, 452
RsaNI	GTAC	4 cut(s)	63, 326, 333, 451
Rsr2I	CGGWCCG	1 cut(s)	18
RsrII	CGGWCCG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	304, 555
Sau3AI	GATC	3 cut(s)	29, 196, 257
Sau96I	GGNCC	4 cut(s)	18, 39, 49, 337
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	3 cut(s)	360, 391, 772
ScrFI	CCNGG	3 cut(s)	112, 562, 736
SduI	GDGCHC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	18, 49
Sse9I	AATT	8 cut(s)	2, 43, 132, 228, 435, 467, 617, 757
SsiI	CCGC	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	3 cut(s)	110, 560, 734
TaaI	ACNGT	2 cut(s)	156, 458
TaqII	GACCGA	2 cut(s)	35, 66
TasI	AATT	8 cut(s)	2, 43, 132, 228, 435, 467, 617, 757
TatI	WGTACW	2 cut(s)	325, 450
TfiI	GAWTC	4 cut(s)	166, 657, 800, 846
Tru1I	TTAA	2 cut(s)	304, 555
Tru9I	TTAA	2 cut(s)	304, 555
TscAI	CASTG	3 cut(s)	161, 350, 429
TseFI	GTSAC	2 cut(s)	383, 729
Tsp45I	GTSAC	2 cut(s)	383, 729
TspDTI	ATGAA	3 cut(s)	62, 496, 823
TspGWI	ACGGA	2 cut(s)	50, 604
TspRI	CASTG	3 cut(s)	161, 350, 429
VpaK11BI	GGWCC	2 cut(s)	18, 49
XapI	RAATTY	2 cut(s)	435, 467
XceI	RCATGY	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.