Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Reverse (-)

20656193 .. 20658001

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAATTTCACAAGCCGTCTTGGCTACTGTCTTTGGCATCCTAGGGAATATCATCTCCTTTTTCGTCTGCCTTGCCCCAATACCGACGTTCGTTCGTATATACAAGAGGAAGTCATCTGAAGGGTATCAGTCGATCCCTTACGTGATTTCTCTGTTCAGCGCGATGCTATGGATGTACTACGCAATGATCAAGAAAGATGCTATGATGTTGATCACTATCAACTCCTTTGCCTTTGTCGTACAAATCGTCTACATCTCCTTATTCTTCTTCTACGCTCCTAAGAAGGAAAAGACTCTAACGGTGAAGTTCGTCCTCTTTGTGGATGTTTTGGGTTTCGGCGCAATCTTCGTGTTGACATACTTTATAATTCATGCCAATAAACGTGTTCAAGTTCTTGGATACATTTGTATGGTCTTTGCTCTATCTGTTTTTGTTGCTCCCCTTGGCATAATTAGGAAAGTGATCAAAACGAAGAGCGCCGAGTTCATGCCATTCGGTCTCTCCTTCTTCCTCACCTTATCGGCTGTCATGTGGTTTTTCTACGGACTTCTCCTTAAAGACATGAACATTGCCCTGCCAAATGTTTTGGGTTTCATCTTTGGAGTACTTCAGATGATTCTTTTCTTGATCTACAAGAAACCAGGGACTAAAGTCTTGGAGCCACCAGGGATTAAGCTTCAGGACATATCTGAGCATGTAGTCGATGTTGTGAGGCTAAGTACGATGGTTTGCAACTCACAGATGAGAACTTTGGTGCCACAAGACAGTGCCGATATGGAAGCAACCATTGATATAGATGAGAAGATCAAAGGAGATATTGAGAAGAATAAGGATGAAAAAGAAGTATTTCTCATTTCTAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

289

Amino Acids

32.76

Weight (kDa)

9.25

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 96	2.5e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 214	4.5e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	164
AclWI	GGATC	1 cut(s)	130
AcuI	CTGAAG	3 cut(s)	141, 596, 665
AfaI	GTAC	4 cut(s)	179, 243, 609, 724
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	2 cut(s)	643, 667
AluBI	AGCT	1 cut(s)	679
AluI	AGCT	1 cut(s)	679
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	43
AspLEI	GCGC	3 cut(s)	164, 344, 482
AsuHPI	GGTGA	2 cut(s)	316, 508
AvrII	CCTAGG	1 cut(s)	43
BaeI	ACNNNNGTAYC	2 cut(s)	394, 427
BanI	GGYRCC	1 cut(s)	757
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	645, 669
BciVI	GTATCC	1 cut(s)	395
BclI	TGATCA	3 cut(s)	189, 213, 465
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	23
BlnI	CCTAGG	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	645, 669
BmiI	GGNNCC	2 cut(s)	663, 759
BmrFI	CCNGG	2 cut(s)	645, 669
BmsI	GCATC	3 cut(s)	48, 156, 190
BoxI	GACNNNNGTC	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	2 cut(s)	212, 218
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	43, 445, 644, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	192, 570
Bse8I	GATNNNNATC	2 cut(s)	212, 218
BseBI	CCWGG	2 cut(s)	645, 669
BseDI	CCNNGG	4 cut(s)	43, 445, 644, 668
BseGI	GGATG	4 cut(s)	39, 180, 331, 841
BseJI	GATNNNNATC	2 cut(s)	212, 218
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	192, 570
BseMII	CTCAG	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	661
Bso31I	GGTCTC	1 cut(s)	506
Bsp143I	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	663, 759
BspPI	GGATC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	2 cut(s)	192, 570
BssECI	CCNNGG	4 cut(s)	43, 445, 644, 668
BssMI	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
BssT1I	CCWWGG	2 cut(s)	43, 445
Bst2UI	CCWGG	2 cut(s)	645, 669
Bst4CI	ACNGT	3 cut(s)	31, 304, 770
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	282, 693, 719, 861
BstF5I	GGATG	4 cut(s)	39, 180, 331, 841
BstFNI	CGCG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	3 cut(s)	164, 344, 482
BstKTI	GATC	6 cut(s)	138, 192, 216, 468, 633, 810
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	645, 669
BstNSI	RCATGY	1 cut(s)	701
BstPAI	GACNNNNGTC	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	643, 667
BstUI	CGCG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	4 cut(s)	39, 180, 331, 841
BtsIMutI	CAGTG	1 cut(s)	775
CfoI	GCGC	3 cut(s)	164, 344, 482
Csp6I	GTAC	4 cut(s)	178, 242, 608, 723
CviAII	CATG	5 cut(s)	374, 490, 532, 565, 698
CviJI	RGCY	6 cut(s)	17, 26, 527, 664, 679, 718
CviKI_1	RGCY	6 cut(s)	17, 26, 527, 664, 679, 718
CviQI	GTAC	4 cut(s)	178, 242, 608, 723
DdeI	CTNAG	4 cut(s)	282, 693, 719, 861
DpnI	GATC	6 cut(s)	137, 191, 215, 467, 632, 809
DpnII	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	43, 445
Eco31I	GGTCTC	1 cut(s)	506
Eco57I	CTGAAG	3 cut(s)	141, 596, 665
EcoRII	CCWGG	2 cut(s)	643, 667
EcoT14I	CCWWGG	2 cut(s)	43, 445
ErhI	CCWWGG	2 cut(s)	43, 445
FaeI	CATG	5 cut(s)	377, 493, 535, 568, 701
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	373, 489, 531, 564, 697
FbaI	TGATCA	3 cut(s)	189, 213, 465
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	4 cut(s)	26, 187, 338, 848
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	3 cut(s)	163, 343, 481
HaeII	RGCGCY	1 cut(s)	483
HhaI	GCGC	3 cut(s)	164, 344, 482
Hin1II	CATG	5 cut(s)	377, 493, 535, 568, 701
Hin6I	GCGC	3 cut(s)	162, 342, 480
HinP1I	GCGC	3 cut(s)	162, 342, 480
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	2 cut(s)	295, 619
HphI	GGTGA	2 cut(s)	316, 508
Hpy166II	GTNNAC	2 cut(s)	253, 357
Hpy188I	TCNGA	3 cut(s)	121, 615, 694
Hpy188III	TCNNGA	3 cut(s)	193, 628, 683
Hpy8I	GTNNAC	2 cut(s)	253, 357
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	116, 280, 517
HpyCH4III	ACNGT	3 cut(s)	31, 304, 770
HpyCH4IV	ACGT	3 cut(s)	89, 144, 385
HpyCH4V	TGCA	1 cut(s)	735
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	282, 693, 719, 861
HpySE526I	ACGT	3 cut(s)	89, 144, 385
Hsp92II	CATG	5 cut(s)	377, 493, 535, 568, 701
HspAI	GCGC	3 cut(s)	162, 342, 480
Ksp22I	TGATCA	3 cut(s)	189, 213, 465
Kzo9I	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	3 cut(s)	283, 445, 661
LpnPI	CCDG	6 cut(s)	590, 630, 654, 657, 668, 681
LweI	GCATC	3 cut(s)	48, 156, 190
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	89, 144, 385
MalI	GATC	6 cut(s)	137, 191, 215, 467, 632, 809
MboI	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
MboII	GAAGA	7 cut(s)	259, 262, 340, 487, 502, 817, 838
MluCI	AATT	4 cut(s)	6, 369, 453, 865
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	102, 326, 524, 708
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	3 cut(s)	558, 675, 868
MslI	CAYNNNNRTG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	645, 669
MvaI	CCWGG	2 cut(s)	645, 669
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
NlaIII	CATG	5 cut(s)	377, 493, 535, 568, 701
NlaIV	GGNNCC	2 cut(s)	663, 759
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	1 cut(s)	619
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	653
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	643, 667
PspGI	CCWGG	2 cut(s)	643, 667
PspN4I	GGNNCC	2 cut(s)	663, 759
RsaI	GTAC	4 cut(s)	179, 243, 609, 724
RsaNI	GTAC	4 cut(s)	178, 242, 608, 723
RseI	CAYNNNNRTG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	558, 675, 868
Sau3AI	GATC	6 cut(s)	135, 189, 213, 465, 630, 807
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	645, 669
SetI	ASST	5 cut(s)	92, 147, 388, 521, 681
SfaNI	GCATC	3 cut(s)	48, 156, 190
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	6, 369, 453, 865
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	643, 667
StyI	CCWWGG	2 cut(s)	43, 445
TaaI	ACNGT	3 cut(s)	31, 304, 770
TaiI	ACGT	3 cut(s)	92, 147, 388
TaqI	TCGA	2 cut(s)	134, 705
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	6, 369, 453, 865
TatI	WGTACW	2 cut(s)	177, 607
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	3 cut(s)	558, 675, 868
Tru9I	TTAA	3 cut(s)	558, 675, 868
TscAI	CASTG	1 cut(s)	775
TspDTI	ATGAA	5 cut(s)	362, 478, 581, 586, 852
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	1 cut(s)	775
XceI	RCATGY	1 cut(s)	701
XmaJI	CCTAGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.