Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8153075 .. 8154704

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCACTTGCTCAATTCTTTTTCTCTAGGCAACATCATCTCCTTTATGGTTTTCCTTGCTCCACTGCCAACCTTTTATACAATTTACAAGAAAAAAACAACTGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTTAAACAAGACGCCACATTTCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCTTACCTTGCCATTTTCCTTTTTTATGCCCCCAAGATGGCCAGGATCTCAACTGTGAAACTTCTGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGCTTGTGCTTACTCACTTCCTTGCGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCTAACCGTGTTTGCTGCACCTCTATGCATCTTGAAAAAAGTGATACGAACCAAGAGTGTTGAGTTCATGCCATTTCCTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGTGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGAGGAGCCAAGCAAGGTTCAGGAGCTATCAGAACATATTATTGAGGTGATGAAGATCAGCACCTTGGTGTGTCCAGACCTGACCCCAGTGGTTCTTCAGCCAAATGACATTGACCTCATTGAAGTAGTACTTGACCCAAATAATATTATCAAGGAAATCAAGACCGAAGAAACCAAGGAAGACATGGATGATGCCTCCACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

283

Amino Acids

32.19

Weight (kDa)

8.15

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 89	1.6e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	126 - 211	7.3e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	284, 395
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	3 cut(s)	123, 124, 722
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	3 cut(s)	617, 636, 771
AfiI	CCNNNNNNNGG	2 cut(s)	268, 502
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	113, 403, 439, 764
AjnI	CCWGG	1 cut(s)	272
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	3 cut(s)	144, 557, 667
AluI	AGCT	3 cut(s)	144, 557, 667
Alw26I	GTCTC	2 cut(s)	221, 374
AlwI	GGATC	2 cut(s)	284, 395
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	4 cut(s)	144, 169, 216, 419
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	371, 700
BalI	TGGCCA	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	391, 828
BbvI	GCAGC	4 cut(s)	131, 156, 203, 406
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	221, 374
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	4 cut(s)	145, 170, 217, 420
BlsI	GCNGC	4 cut(s)	146, 171, 218, 421
BmcAI	AGTACT	2 cut(s)	636, 771
Bme1390I	CCNGG	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	2 cut(s)	581, 722
BmsI	GCATC	3 cut(s)	318, 441, 823
BmuI	ACTGGG	2 cut(s)	581, 722
BpiI	GAAGAC	2 cut(s)	391, 828
BpmI	CTGGAG	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	356, 524
BsaBI	GATNNNNATC	1 cut(s)	695
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	705, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 502
Bse1I	ACTGG	2 cut(s)	576, 728
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	705, 816
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	268, 502
BseNI	ACTGG	2 cut(s)	576, 728
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	131, 156, 203, 406
BsgI	GTGCAG	2 cut(s)	405, 528
BshFI	GGCC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	268, 502
BsmAI	GTCTC	2 cut(s)	221, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	276, 387, 696
BspANI	GGCC	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	284, 395
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	576, 728
BssECI	CCNNGG	2 cut(s)	705, 816
BssMI	GATC	3 cut(s)	276, 387, 696
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	705, 816
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	286, 412
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	835
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	279, 390, 699
BstMAI	GTCTC	2 cut(s)	221, 374
BstMBI	GATC	3 cut(s)	276, 387, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 601
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	131, 156, 203, 406
BstV2I	GAAGAC	2 cut(s)	391, 828
BstX2I	RGATCY	2 cut(s)	276, 387
BstYI	RGATCY	2 cut(s)	276, 387
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	2 cut(s)	62, 116
BtsIMutI	CAGTG	3 cut(s)	62, 116, 735
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	169
CseI	GACGC	3 cut(s)	191, 208, 356
Csp6I	GTAC	3 cut(s)	616, 635, 770
CviAII	CATG	4 cut(s)	148, 472, 514, 826
CviJI	RGCY	9 cut(s)	144, 216, 272, 324, 384, 557, 649, 667, 742
CviKI_1	RGCY	9 cut(s)	144, 216, 272, 324, 384, 557, 649, 667, 742
CviQI	GTAC	3 cut(s)	616, 635, 770
DpnI	GATC	3 cut(s)	278, 389, 698
DpnII	GATC	3 cut(s)	276, 387, 696
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	705, 816
Eco57I	CTGAAG	3 cut(s)	123, 124, 722
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	705, 816
EcoT22I	ATGCAT	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	705, 816
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	4 cut(s)	151, 475, 517, 829
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	4 cut(s)	147, 471, 513, 825
FauNDI	CATATG	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	145, 170, 217, 420
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	4 cut(s)	145, 170, 217, 420
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	145, 170, 217, 420
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	272
HgaI	GACGC	3 cut(s)	191, 208, 356
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	151, 475, 517, 829
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HphI	GGTGA	2 cut(s)	371, 700
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	2 cut(s)	317, 673
Hpy188III	TCNNGA	6 cut(s)	436, 496, 641, 662, 716, 802
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	286, 412
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	6 cut(s)	4, 147, 422, 432, 509, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 601
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	151, 475, 517, 829
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	276, 387, 696
LmnI	GCTCC	3 cut(s)	64, 646, 664
Lsp1109I	GCAGC	4 cut(s)	131, 156, 203, 406
LweI	GCATC	3 cut(s)	318, 441, 823
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	309
MalI	GATC	3 cut(s)	278, 389, 698
MboI	GATC	3 cut(s)	276, 387, 696
MboII	GAAGA	7 cut(s)	130, 391, 514, 706, 728, 821, 833
MflI	RGATCY	2 cut(s)	276, 387
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	2 cut(s)	13, 81
MluNI	TGGCCA	1 cut(s)	272
MnlI	CCTC	6 cut(s)	435, 492, 637, 679, 767, 847
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	427, 707
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	239, 601
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	3 cut(s)	276, 387, 696
NlaIII	CATG	4 cut(s)	151, 475, 517, 829
NlaIV	GGNNCC	1 cut(s)	648
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	707
PaeI	GCATGC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	146, 171, 218, 421
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	648
PsuI	RGATCY	2 cut(s)	276, 387
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	3 cut(s)	617, 636, 771
RsaNI	GTAC	3 cut(s)	616, 635, 770
RseI	CAYNNNNRTG	2 cut(s)	427, 707
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	145, 170, 217, 420
Sau3AI	GATC	3 cut(s)	276, 387, 696
ScaI	AGTACT	2 cut(s)	636, 771
ScrFI	CCNGG	1 cut(s)	274
SfaNI	GCATC	3 cut(s)	318, 441, 823
SmiMI	CAYNNNNRTG	2 cut(s)	427, 707
SmlI	CTYRAG	2 cut(s)	371, 539
SmoI	CTYRAG	2 cut(s)	371, 539
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	13, 81
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	705, 816
TaaI	ACNGT	2 cut(s)	286, 412
TaiI	ACGT	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	2 cut(s)	13, 81
TatI	WGTACW	3 cut(s)	615, 634, 769
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	3 cut(s)	69, 123, 735
TseI	GCWGC	4 cut(s)	144, 169, 216, 419
TspDTI	ATGAA	3 cut(s)	460, 477, 707
TspRI	CASTG	3 cut(s)	69, 123, 735
XceI	RCATGY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	2 cut(s)	636, 771
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.