Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Reverse (-)

5181866 .. 5183903

Gene Structure 2038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08962.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCATTCATCACCCATTGACTCTGGCTTTTGGCCTCTTAGGCAACATCATCTCCTTTATGGTGTTCCTTGCTCCAATGCCAACCTTTTATAAAATCTACAAGAAGAAAACAACTGAAGGGTTCCAAGCACTGCCATATGCGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTTAAACAAGACGCCACATTTCTCATCACTATCAACTCTGTGGGCTGCGTCATTGAGACTGTTTACCTTGCCATTTTCCTTTTCTATTCCCCCAAGAAGGCTAGGATCTCAACTGTGAAGTTTCTGCTCTTGCTAAACGTGCTCGGGTATGGCTTGATGCTTGTGCTGACTCTCTTTCTTGCAAAAGGTGAAATACGTCTCAAGGTTGTGGGGTGGATCTGTCTTGTCTTCAATCTAACCGTGTTTGCTGCACCTCTCTGCATCTTGAAAAAAGTGATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGTGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGTTCATGTTCGGGATTGCGCAAATGGTGCTCTACATAGTCTACAAGAATGCCAAGAAAGTAGTACTTCTGGAGGAGCCAAGTAAGGTACAGGAGCTATCAGACCATATTATTGAGGTAATGAAGATCAGCACCATGGTGTGTCCCGACCTGACTCCAGTGGTTCTTCAGCCAAATGACATTAATATTGACCTCATCGAAGTAATACCACTTGACCCAAATAACGTTGTCAAGGGAATCAATGCTGAAGAATCAAAGGAAGACATGGATGATGCCTCCACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

293

Amino Acids

33.0

Weight (kDa)

8.45

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 95	8.4e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 216	1.7e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc16I	TGCGCA	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	1 cut(s)	143
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	2 cut(s)	299, 410
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	4 cut(s)	138, 139, 740, 855
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	654, 678
AfiI	CCNNNNNNNGG	2 cut(s)	283, 517
AgsI	TTSAA	2 cut(s)	418, 454
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	3 cut(s)	159, 572, 685
AluI	AGCT	3 cut(s)	159, 572, 685
Alw21I	GWGCWC	2 cut(s)	330, 621
Alw26I	GTCTC	2 cut(s)	236, 389
AlwI	GGATC	2 cut(s)	299, 410
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	3, 34
ApeKI	GCWGC	4 cut(s)	159, 184, 231, 434
AseI	ATTAAT	1 cut(s)	771
AspLEI	GCGC	2 cut(s)	184, 610
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	5, 386
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	406, 855
Bbv12I	GWGCWC	2 cut(s)	330, 621
BbvI	GCAGC	4 cut(s)	146, 171, 218, 421
BcoDI	GTCTC	2 cut(s)	236, 389
BfaI	CTAG	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	160, 185, 232, 435
BlsI	GCNGC	4 cut(s)	161, 186, 233, 436
BmcAI	AGTACT	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	125, 666
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	333, 456, 850
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	2 cut(s)	406, 855
BpmI	CTGGAG	2 cut(s)	680, 729
BpuEI	CTTGAG	2 cut(s)	371, 539
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 517
Bse1I	ACTGG	2 cut(s)	591, 746
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	283, 517
BseNI	ACTGG	2 cut(s)	591, 746
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	4 cut(s)	146, 171, 218, 421
BsgI	GTGCAG	2 cut(s)	420, 543
BshFI	GGCC	2 cut(s)	5, 36
BsiHKAI	GWGCWC	2 cut(s)	330, 621
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	283, 517
BsmAI	GTCTC	2 cut(s)	236, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	5, 36
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	330, 621
Bsp143I	GATC	3 cut(s)	291, 402, 714
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	5, 36
BspLI	GGNNCC	2 cut(s)	125, 666
BspPI	GGATC	2 cut(s)	299, 410
BsrI	ACTGG	2 cut(s)	591, 746
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	3 cut(s)	291, 402, 714
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	247, 301, 427
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	862
BstHHI	GCGC	2 cut(s)	184, 610
BstKTI	GATC	3 cut(s)	294, 405, 717
BstMAI	GTCTC	2 cut(s)	236, 389
BstMBI	GATC	3 cut(s)	291, 402, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 325, 616
BstNSI	RCATGY	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	146, 171, 218, 421
BstV2I	GAAGAC	2 cut(s)	406, 855
BstX2I	RGATCY	2 cut(s)	291, 402
BstYI	RGATCY	2 cut(s)	291, 402
BsuRI	GGCC	2 cut(s)	5, 36
BtgI	CCRYGG	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 753
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	2 cut(s)	184, 610
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	2 cut(s)	206, 223
Csp6I	GTAC	2 cut(s)	653, 677
CviAII	CATG	6 cut(s)	163, 487, 529, 595, 724, 853
CviQI	GTAC	2 cut(s)	653, 677
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	293, 404, 716
DpnII	GATC	3 cut(s)	291, 402, 714
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	4 cut(s)	138, 139, 740, 855
Eco88I	CYCGRG	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	6 cut(s)	166, 490, 532, 598, 727, 856
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	6 cut(s)	162, 486, 528, 594, 723, 852
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	160, 185, 232, 435
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	4 cut(s)	160, 185, 232, 435
FspBI	CTAG	1 cut(s)	288
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	2 cut(s)	183, 609
GluI	GCNGC	4 cut(s)	160, 185, 232, 435
GsuI	CTGGAG	2 cut(s)	680, 729
HaeIII	GGCC	2 cut(s)	5, 36
HgaI	GACGC	2 cut(s)	206, 223
HhaI	GCGC	2 cut(s)	184, 610
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	6 cut(s)	166, 490, 532, 598, 727, 856
Hin6I	GCGC	2 cut(s)	182, 608
HinP1I	GCGC	2 cut(s)	182, 608
HinfI	GANTC	5 cut(s)	22, 355, 742, 825, 839
HphI	GGTGA	2 cut(s)	5, 386
Hpy166II	GTNNAC	2 cut(s)	250, 631
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	5 cut(s)	451, 511, 601, 659, 734
Hpy8I	GTNNAC	2 cut(s)	250, 631
HpyAV	CCTTC	2 cut(s)	113, 277
HpyCH4III	ACNGT	3 cut(s)	247, 301, 427
HpyCH4IV	ACGT	3 cut(s)	324, 382, 813
HpyCH4V	TGCA	5 cut(s)	162, 368, 437, 447, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 325, 616
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	3 cut(s)	324, 382, 813
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	166, 490, 532, 598, 727, 856
HspAI	GCGC	2 cut(s)	182, 608
Kzo9I	GATC	3 cut(s)	291, 402, 714
LmnI	GCTCC	3 cut(s)	79, 664, 682
LpnPI	CCDG	7 cut(s)	11, 524, 572, 644, 665, 752, 759
Lsp1109I	GCAGC	4 cut(s)	146, 171, 218, 421
LweI	GCATC	3 cut(s)	333, 456, 850
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	3 cut(s)	324, 382, 813
MalI	GATC	3 cut(s)	293, 404, 716
MboI	GATC	3 cut(s)	291, 402, 714
MboII	GAAGA	8 cut(s)	118, 145, 406, 529, 724, 746, 848, 860
MflI	RGATCY	2 cut(s)	291, 402
MhlI	GDGCHC	2 cut(s)	330, 621
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	16, 349, 736
MnlI	CCTC	7 cut(s)	47, 450, 507, 655, 697, 791, 874
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	189, 771
MslI	CAYNNNNRTG	1 cut(s)	725
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	643
MwoI	GCNNNNNNNGC	3 cut(s)	42, 325, 616
NcoI	CCATGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	291, 402, 714
NlaIII	CATG	6 cut(s)	166, 490, 532, 598, 727, 856
NlaIV	GGNNCC	2 cut(s)	125, 666
NsbI	TGCGCA	1 cut(s)	609
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	643
PfeI	GAWTC	2 cut(s)	825, 839
PkrI	GCNGC	4 cut(s)	161, 186, 233, 436
PleI	GAGTC	3 cut(s)	16, 349, 736
PpsI	GAGTC	3 cut(s)	16, 349, 736
PshBI	ATTAAT	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	125, 666
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	291, 402
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	2 cut(s)	654, 678
RsaNI	GTAC	2 cut(s)	653, 677
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	189, 771
SatI	GCNGC	4 cut(s)	160, 185, 232, 435
Sau3AI	GATC	3 cut(s)	291, 402, 714
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	3 cut(s)	16, 349, 736
SduI	GDGCHC	2 cut(s)	330, 621
SfaNI	GCATC	3 cut(s)	333, 456, 850
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	386, 554
SmoI	CTYRAG	2 cut(s)	386, 554
SphI	GCATGC	1 cut(s)	166
SsiI	CCGC	1 cut(s)	143
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	3 cut(s)	247, 301, 427
TaiI	ACGT	3 cut(s)	327, 385, 816
TaqI	TCGA	1 cut(s)	786
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	825, 839
Tru1I	TTAA	2 cut(s)	189, 771
Tru9I	TTAA	2 cut(s)	189, 771
TscAI	CASTG	2 cut(s)	138, 753
TseI	GCWGC	4 cut(s)	159, 184, 231, 434
TspDTI	ATGAA	4 cut(s)	475, 492, 583, 725
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	2 cut(s)	138, 753
VpaK11BI	GGWCC	1 cut(s)	468
VspI	ATTAAT	1 cut(s)	771
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.