Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8669501 .. 8671409

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACTATTCATCACCCATTGACTTTGGCTTTTGGCCTCTTAGGCAACATTATCTCCTTTATGGTTTTCCTTGCTCCACTGCCAACCTTTTATACAATTTACAAGAAAAAAACAACTGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTTAAACAAGACGCCACATTTCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGTTTACCTTGCCATTTTCCTTTTTTATTCCCCCAAGATGGCCAGGATCTCAACTGTAAAACTTCTGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGCTTGTGCTTACTCACTTCCTTGCGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCTAACCGTGTTTGCTGCACCTCTATGCATCTTGAAAAAAGTGATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGTGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGATGAGCCAAGCAAGGTTCAGGAGCTATCAGACCATATTATTGAGGTGATGAAGATCAGCACCTTGGTGTGTCCAGACCTGACCCCAGTGGTTCTTCAGCCAAATGACATTGACCTCATTGAAGTAGTACTTGACCCAAATAATATTATCAAGGAAATCAAGACCGAAGAAACCAAGGAAGACATGGATGATGCCTCCACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

288

Amino Acids

32.71

Weight (kDa)

8.15

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	8.2e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 216	7.5e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	299, 410
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	3 cut(s)	138, 139, 737
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	632, 651, 786
AfiI	CCNNNNNNNGG	2 cut(s)	283, 517
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	128, 418, 454, 779
AjnI	CCWGG	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	159, 572, 682
AluI	AGCT	3 cut(s)	159, 572, 682
Alw26I	GTCTC	2 cut(s)	236, 389
AlwI	GGATC	2 cut(s)	299, 410
AoxI	GGCC	2 cut(s)	34, 285
ApeKI	GCWGC	4 cut(s)	159, 184, 231, 434
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	5, 386, 715
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	406, 843
BbvI	GCAGC	4 cut(s)	146, 171, 218, 421
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 389
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	160, 185, 232, 435
BlsI	GCNGC	4 cut(s)	161, 186, 233, 436
BmcAI	AGTACT	2 cut(s)	651, 786
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	2 cut(s)	596, 737
BmsI	GCATC	3 cut(s)	333, 456, 838
BmuI	ACTGGG	2 cut(s)	596, 737
BpiI	GAAGAC	2 cut(s)	406, 843
BpuEI	CTTGAG	2 cut(s)	371, 539
BsaBI	GATNNNNATC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	720, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 517
Bse1I	ACTGG	2 cut(s)	591, 743
Bse8I	GATNNNNATC	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	720, 831
BseGI	GGATG	2 cut(s)	664, 850
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	283, 517
BseNI	ACTGG	2 cut(s)	591, 743
BseXI	GCAGC	4 cut(s)	146, 171, 218, 421
BsgI	GTGCAG	2 cut(s)	420, 543
BshFI	GGCC	2 cut(s)	36, 287
BslI	CCNNNNNNNGG	2 cut(s)	283, 517
BsmAI	GTCTC	2 cut(s)	236, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	36, 287
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	291, 402, 711
BspANI	GGCC	2 cut(s)	36, 287
BspPI	GGATC	2 cut(s)	299, 410
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	591, 743
BssECI	CCNNGG	2 cut(s)	720, 831
BssMI	GATC	3 cut(s)	291, 402, 711
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	720, 831
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	247, 301, 427
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	664, 850
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	294, 405, 714
BstMAI	GTCTC	2 cut(s)	236, 389
BstMBI	GATC	3 cut(s)	291, 402, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 616
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	146, 171, 218, 421
BstV2I	GAAGAC	2 cut(s)	406, 843
BstX2I	RGATCY	2 cut(s)	291, 402
BstYI	RGATCY	2 cut(s)	291, 402
BsuRI	GGCC	2 cut(s)	36, 287
BtsCI	GGATG	2 cut(s)	664, 850
BtsI	GCAGTG	2 cut(s)	77, 131
BtsIMutI	CAGTG	3 cut(s)	77, 131, 750
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	3 cut(s)	206, 223, 371
Csp6I	GTAC	3 cut(s)	631, 650, 785
CviAII	CATG	4 cut(s)	163, 487, 529, 841
CviQI	GTAC	3 cut(s)	631, 650, 785
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	293, 404, 713
DpnII	GATC	3 cut(s)	291, 402, 711
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	720, 831
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	3 cut(s)	138, 139, 737
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	720, 831
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	720, 831
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	4 cut(s)	166, 490, 532, 844
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	4 cut(s)	162, 486, 528, 840
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	160, 185, 232, 435
FokI	GGATG	2 cut(s)	671, 857
Fsp4HI	GCNGC	4 cut(s)	160, 185, 232, 435
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	160, 185, 232, 435
HaeIII	GGCC	2 cut(s)	36, 287
HgaI	GACGC	3 cut(s)	206, 223, 371
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	166, 490, 532, 844
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HphI	GGTGA	3 cut(s)	5, 386, 715
Hpy166II	GTNNAC	2 cut(s)	250, 631
Hpy188I	TCNGA	2 cut(s)	332, 688
Hpy188III	TCNNGA	6 cut(s)	451, 511, 656, 677, 731, 817
Hpy8I	GTNNAC	2 cut(s)	250, 631
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	3 cut(s)	247, 301, 427
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	162, 437, 447, 524, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 616
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	166, 490, 532, 844
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	291, 402, 711
LmnI	GCTCC	2 cut(s)	79, 679
Lsp1109I	GCAGC	4 cut(s)	146, 171, 218, 421
LweI	GCATC	3 cut(s)	333, 456, 838
MaeII	ACGT	1 cut(s)	324
MalI	GATC	3 cut(s)	293, 404, 713
MboI	GATC	3 cut(s)	291, 402, 711
MboII	GAAGA	7 cut(s)	145, 406, 529, 721, 743, 836, 848
MflI	RGATCY	2 cut(s)	291, 402
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	6 cut(s)	47, 450, 507, 694, 782, 862
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	442, 722
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	42, 616
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	291, 402, 711
NlaIII	CATG	4 cut(s)	166, 490, 532, 844
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	161, 186, 233, 436
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	291, 402
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	632, 651, 786
RsaNI	GTAC	3 cut(s)	631, 650, 785
RseI	CAYNNNNRTG	2 cut(s)	442, 722
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	160, 185, 232, 435
Sau3AI	GATC	3 cut(s)	291, 402, 711
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	2 cut(s)	651, 786
ScrFI	CCNGG	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	333, 456, 838
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	442, 722
SmlI	CTYRAG	2 cut(s)	386, 554
SmoI	CTYRAG	2 cut(s)	386, 554
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	96
SspI	AATATT	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	720, 831
TaaI	ACNGT	3 cut(s)	247, 301, 427
TaiI	ACGT	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	1 cut(s)	96
TatI	WGTACW	3 cut(s)	630, 649, 784
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	84, 138, 750
TseI	GCWGC	4 cut(s)	159, 184, 231, 434
TspDTI	ATGAA	3 cut(s)	475, 492, 722
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	3 cut(s)	84, 138, 750
VpaK11BI	GGWCC	1 cut(s)	468
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	2 cut(s)	651, 786
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.