Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001282.1

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

52465 .. 53501

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001282.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgctgtggatttactatgcgctgctcaaacaggacgccacattgctcatcactatcaactctgttggctgcgtcattgagactgcctaccttgctattttccttttttatgcccccaagatggccaggatctcaactttgaaacttctgctgttgctcaacgtgttcggatatggcttgatgcctgtgctgactctctttcgtacgaaaggtgaaaagcgtctcaaggttgtgggctggatctgtcttgtcttcaatcaaaccgtgtttgctgcacctctatgcatctcgggtgttgagttcatgccatttcttctttcatttttcctgacattgggtgcagtcatgaggttcttctatggttttctgctcaaggactacaacatagcttttccaaacatactgggggtcatctttgggattgtgcaaatggtgctatacatagtgtacaagaatgccaagaaagtacttctggaggagccaagcaaggttcaggagctatcagacgatattactgaggtgctgaatatcagcaccatggtgtgtccacacctaaccccagtggttcttcagccaaatgacattaacctcattgaagtagtacttgacccaaataatattatcaaggaaatcaagaccgaagaaaccaaggaagacatggacgatgccaccactaaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

5.51

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	137, 248
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	4 cut(s)	205, 449, 468, 603
AfiI	CCNNNNNNNGG	2 cut(s)	121, 334
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	142, 256, 596
AjnI	CCWGG	1 cut(s)	125
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	2 cut(s)	389, 499
AluI	AGCT	2 cut(s)	389, 499
Alw26I	GTCTC	2 cut(s)	74, 227
AlwI	GGATC	2 cut(s)	137, 248
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	22, 69, 272
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	244, 660
BbvI	GCAGC	3 cut(s)	9, 56, 259
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	74, 227
BfaI	CTAG	1 cut(s)	682
BisI	GCNGC	3 cut(s)	23, 70, 273
BlsI	GCNGC	3 cut(s)	24, 71, 274
BmcAI	AGTACT	2 cut(s)	468, 603
Bme1390I	CCNGG	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	127
BmrI	ACTGGG	2 cut(s)	413, 554
BmsI	GCATC	3 cut(s)	171, 294, 655
BmuI	ACTGGG	2 cut(s)	413, 554
BpiI	GAAGAC	2 cut(s)	244, 660
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	209, 356
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	537, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 334
Bse1I	ACTGG	2 cut(s)	408, 560
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	537, 648
BseLI	CCNNNNNNNGG	2 cut(s)	121, 334
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	408, 560
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	9, 56, 259
BsgI	GTGCAG	2 cut(s)	258, 360
BshFI	GGCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	289
BsiWI	CGTACG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	121, 334
BsmAI	GTCTC	2 cut(s)	74, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	129, 240
Bsp19I	CCATGG	1 cut(s)	537
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	137, 248
BsrDI	GCAATG	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	408, 560
BssECI	CCNNGG	2 cut(s)	537, 648
BssMI	GATC	2 cut(s)	129, 240
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	537, 648
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	265
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstAUI	TGTACA	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	132, 243
BstMAI	GTCTC	2 cut(s)	74, 227
BstMBI	GATC	2 cut(s)	129, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 433
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	9, 56, 259
BstV2I	GAAGAC	2 cut(s)	244, 660
BstX2I	RGATCY	2 cut(s)	129, 240
BstYI	RGATCY	2 cut(s)	129, 240
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	567
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	22
CseI	GACGC	3 cut(s)	44, 61, 209
Csp6I	GTAC	4 cut(s)	204, 448, 467, 602
CviAII	CATG	4 cut(s)	304, 346, 538, 658
CviJI	RGCY	8 cut(s)	69, 125, 177, 237, 389, 481, 499, 574
CviKI_1	RGCY	8 cut(s)	69, 125, 177, 237, 389, 481, 499, 574
CviQI	GTAC	4 cut(s)	204, 448, 467, 602
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	131, 242
DpnII	GATC	2 cut(s)	129, 240
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	537, 648
Eco57I	CTGAAG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	537, 648
EcoT22I	ATGCAT	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	537, 648
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	307, 349, 541, 661
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FatI	CATG	4 cut(s)	303, 345, 537, 657
Fnu4HI	GCNGC	3 cut(s)	23, 70, 273
Fsp4HI	GCNGC	3 cut(s)	23, 70, 273
FspBI	CTAG	1 cut(s)	682
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	23, 70, 273
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	3 cut(s)	44, 61, 209
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	307, 349, 541, 661
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	448, 548
Hpy188I	TCNGA	2 cut(s)	170, 505
Hpy188III	TCNNGA	5 cut(s)	328, 346, 473, 494, 634
Hpy8I	GTNNAC	2 cut(s)	448, 548
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	275, 285, 341, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 433
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	307, 349, 541, 661
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	129, 240
LmnI	GCTCC	2 cut(s)	478, 496
Lsp1109I	GCAGC	3 cut(s)	9, 56, 259
LweI	GCATC	3 cut(s)	171, 294, 655
MaeI	CTAG	1 cut(s)	682
MaeII	ACGT	1 cut(s)	162
MalI	GATC	2 cut(s)	131, 242
MboI	GATC	2 cut(s)	129, 240
MboII	GAAGA	6 cut(s)	244, 305, 346, 560, 653, 665
MflI	RGATCY	2 cut(s)	129, 240
MlsI	TGGCCA	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	288, 342, 469, 511, 599
Mox20I	TGGCCA	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	2 cut(s)	280, 539
Msp20I	TGGCCA	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	92, 433
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	129, 240
NlaIII	CATG	4 cut(s)	307, 349, 541, 661
NlaIV	GGNNCC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	460
Pfl23II	CGTACG	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	24, 71, 274
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspLI	CGTACG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	129, 240
RsaI	GTAC	4 cut(s)	205, 449, 468, 603
RsaNI	GTAC	4 cut(s)	204, 448, 467, 602
RseI	CAYNNNNRTG	2 cut(s)	280, 539
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	3 cut(s)	23, 70, 273
Sau3AI	GATC	2 cut(s)	129, 240
ScaI	AGTACT	2 cut(s)	468, 603
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	171, 294, 655
SmiMI	CAYNNNNRTG	2 cut(s)	280, 539
SmlI	CTYRAG	2 cut(s)	224, 371
SmoI	CTYRAG	2 cut(s)	224, 371
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	682
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	537, 648
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	653
TatI	WGTACW	3 cut(s)	447, 466, 601
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	3 cut(s)	22, 69, 272
TspDTI	ATGAA	2 cut(s)	292, 309
TspRI	CASTG	1 cut(s)	567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XspI	CTAG	1 cut(s)	682
ZrmI	AGTACT	2 cut(s)	468, 603
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.