Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

17901707 .. 17902358

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAAATTTTCAAATATTCATATGCGTCCTAGCTAATGAGAACAATGATTTTTGCAATTGCAGGCCAACTTTTTATACAATTTACAAGAAAAAAACAACAGAAGGTTTTCAAGCACTTCCATATGTAATAGGGCTGTTGAGTTCAATGCTGTACATATACTATGCCCTCCTTAAGGAAGAGCTTAAATATGATGCCAATCTTCTCATCACAATCAACTCGGTTGGCGGCGTCATAGAGACTCTTTACATTTCCCTCTTCCTTTTCTATGCCCCCAAGAAGGCCAGGATCTCAACTGCAACGCTTCTGTTCTCACTGAACTGTTTTAGTTACGGAGTGATGGTTGTTTTGACTCGCTTTCTAGCCACAGGTGAAATGCGTATTAAGATTGTGGGATGGATTTGTCTTGTGTTCAGCCTAAGCGTATTTGTCGCACCTCTTGGTGTCCTGGTAATTAGCAACTTCGACTTAAAGCAAATCTTAACTATTTGTAACATCTCAACTAACTGTGTGTTAAATATCTTATTGGAAGAGACGGTACTATATAATTGGTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

187

Amino Acids

21.12

Weight (kDa)

7.47

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	2 cut(s)	155, 540
AfiI	CCNNNNNNNGG	2 cut(s)	175, 280
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	14, 113, 147
AjnI	CCWGG	2 cut(s)	284, 447
AluBI	AGCT	2 cut(s)	35, 184
AluI	AGCT	2 cut(s)	35, 184
Alw26I	GTCTC	2 cut(s)	233, 527
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	65, 282
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	2 cut(s)	9, 108
AsuHPI	GGTGA	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BccI	CCATC	2 cut(s)	334, 390
BciT130I	CCWGG	2 cut(s)	286, 449
BcoDI	GTCTC	2 cut(s)	233, 527
BfaI	CTAG	2 cut(s)	32, 362
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	286, 449
BmrFI	CCNGG	2 cut(s)	286, 449
BmsI	GCATC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 280
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	286, 449
BseGI	GGATG	1 cut(s)	401
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	175, 280
BshFI	GGCC	2 cut(s)	67, 284
BslI	CCNNNNNNNGG	2 cut(s)	175, 280
BsmAI	GTCTC	2 cut(s)	233, 527
BsmBI	CGTCTC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	67, 284
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	288
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	67, 284
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	153
BssMI	GATC	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	286, 449
Bst4CI	ACNGT	3 cut(s)	323, 509, 538
Bst6I	CTCTTC	3 cut(s)	174, 263, 525
BstACI	GRCGYC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	419
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	1 cut(s)	291
BstMAI	GTCTC	2 cut(s)	233, 527
BstMBI	GATC	1 cut(s)	288
BstNI	CCWGG	2 cut(s)	286, 449
BstSCI	CCNGG	2 cut(s)	284, 447
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	67, 284
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	65
CseI	GACGC	2 cut(s)	16, 220
Csp6I	GTAC	2 cut(s)	154, 539
CviJI	RGCY	7 cut(s)	35, 67, 136, 184, 284, 365, 417
CviKI_1	RGCY	7 cut(s)	35, 67, 136, 184, 284, 365, 417
CviQI	GTAC	2 cut(s)	154, 539
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	174, 263, 525
EarI	CTCTTC	3 cut(s)	174, 263, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	284, 447
Esp3I	CGTCTC	1 cut(s)	527
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FauNDI	CATATG	2 cut(s)	23, 124
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	32, 362
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	67, 284
HgaI	GACGC	2 cut(s)	16, 220
Hin1I	GRCGYC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	241, 352
HphI	GGTGA	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	98, 274
HpyCH4III	ACNGT	3 cut(s)	323, 509, 538
HpyCH4V	TGCA	3 cut(s)	57, 63, 299
HpyF3I	CTNAG	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	288
LguI	GCTCTTC	1 cut(s)	174
LpnPI	CCDG	6 cut(s)	49, 271, 298, 354, 434, 461
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	32, 362
MaeIII	GTNAC	2 cut(s)	329, 491
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	4 cut(s)	191, 194, 250, 542
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	1 cut(s)	288
MluCI	AATT	5 cut(s)	7, 58, 81, 453, 547
MlyI	GAGTC	2 cut(s)	235, 346
MnlI	CCTC	3 cut(s)	179, 266, 447
MroXI	GAANNNNTTC	2 cut(s)	9, 108
MseI	TTAA	6 cut(s)	174, 186, 384, 470, 482, 515
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	286, 449
MunI	CAATTG	1 cut(s)	58
MvaI	CCWGG	2 cut(s)	286, 449
NdeI	CATATG	2 cut(s)	23, 124
NdeII	GATC	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	174
PdmI	GAANNNNTTC	2 cut(s)	9, 108
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	2 cut(s)	235, 346
PpsI	GAGTC	2 cut(s)	235, 346
Psp6I	CCWGG	2 cut(s)	284, 447
PspGI	CCWGG	2 cut(s)	284, 447
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	2 cut(s)	155, 540
RsaNI	GTAC	2 cut(s)	154, 539
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	6 cut(s)	174, 186, 384, 470, 482, 515
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	288
SchI	GAGTC	2 cut(s)	235, 346
ScrFI	CCNGG	2 cut(s)	286, 449
SetI	ASST	5 cut(s)	37, 109, 186, 373, 439
SfaNI	GCATC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	5 cut(s)	7, 58, 81, 453, 547
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	32, 362
StyD4I	CCNGG	2 cut(s)	284, 447
TaaI	ACNGT	3 cut(s)	323, 509, 538
TaqI	TCGA	1 cut(s)	465
TasI	AATT	5 cut(s)	7, 58, 81, 453, 547
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	6 cut(s)	174, 186, 384, 470, 482, 515
Tru9I	TTAA	6 cut(s)	174, 186, 384, 470, 482, 515
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	2 cut(s)	9, 108
XspI	CTAG	2 cut(s)	32, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.