Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

24479285 .. 24481341

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1151400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCACTTCACCACACTTTGAGTTTGGCCTTTGGCCTCTTAGGCAATATCATCTCCCTTTTGGTCTTCCTTGCTCCAGTGCCAACTTTTTATACAGTTTACAAGAAAAAAACAACTGAAGGGTTTCAAGCACTTCCATACGTAATTGGGCTCTTGAGTTCAATGATGTACGTATACTATGCCCTCCTTAAGGAAGAGCTGAAAGAGGATGCCACTCTTGTCATCACAATCAACTCGGTTGGCTGCGTCATAGAGACTATTTACATTTCCCTCTTCCTTTTCTATGCCCCTAAGAAGGCCAGGATCTCAACCGCGACGCTTCTGTTCTTGCTGAACCTTTTCAGTTACGGCATGATGGTTGTATTGACTCGCTTTCTAGCCACAGGTGAAACACGTTTTAAGATTGTGGGATGGATTTGTCTTGTGTTCAGCCTAAGCGTATTTGTCGCACCTCTTGGTGTCCTGAGACAAGTAATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCGCTATCATTTTTCCTAACATTAGGTGCAGTCGCATGGTTCTTCTATGGTTTTCTGATCAAGGACTACTACATAGCTTTTCCAAACATTCTGGGCTTCTTCTTTGGGGTTGTTCAAATGGCGGTTTACGTAGTCTACAAGAATGCAAAGAAATTCCTGGAAGATCAGCCAAAAGTTCAAGAATTATCTGAGCACATTATTGATGTGATGAAGATCAGTACTTTGGTGTGTCCAGAACTGAGTCCTGCAGTGATTCTGAATCCAACTGTGGACATTACAAATGACATGATTGAAGTGGTTCAAAATATAATTGTCATGGCTGAAAAGACAGAAAAAACCAAGGAAGCTGCCATTGATGATGATTTCTCCACCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

296

Amino Acids

33.29

Weight (kDa)

6.83

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 99	2e-24	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 220	4.1e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	174, 642
AccII	CGCG	1 cut(s)	314
AciI	CCGC	3 cut(s)	312, 509, 629
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	170, 727
AfiI	CCNNNNNNNGG	2 cut(s)	190, 295
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	6 cut(s)	128, 162, 623, 686, 800, 809
AjnI	CCWGG	2 cut(s)	299, 663
AluBI	AGCT	3 cut(s)	199, 584, 854
AluI	AGCT	3 cut(s)	199, 584, 854
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	2 cut(s)	248, 460
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	3 cut(s)	27, 34, 297
ApeKI	GCWGC	2 cut(s)	243, 854
ApoI	RAATTY	1 cut(s)	659
Asp700I	GAANNNNTTC	3 cut(s)	123, 338, 804
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	2 cut(s)	230, 841
BccI	CCATC	2 cut(s)	349, 405
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	301, 665
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	248, 460
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	244, 855
BlsI	GCNGC	2 cut(s)	245, 856
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	301, 665
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	301, 665
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	175
BsaAI	YACGTR	3 cut(s)	142, 172, 637
BsaBI	GATNNNNATC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	846
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 295
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	2 cut(s)	301, 665
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	2 cut(s)	214, 416
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	2 cut(s)	190, 295
BseMII	CTCAG	3 cut(s)	455, 687, 737
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	230, 841
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	29, 36, 299
BsiHKAI	GWGCWC	1 cut(s)	702
BslI	CCNNNNNNNGG	2 cut(s)	190, 295
BsmAI	GTCTC	2 cut(s)	248, 460
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	29, 36, 299
Bsp1286I	GDGCHC	2 cut(s)	153, 702
Bsp143I	GATC	4 cut(s)	303, 564, 670, 720
BspACI	CCGC	3 cut(s)	312, 509, 629
BspANI	GGCC	3 cut(s)	29, 36, 299
BspCNI	CTCAG	3 cut(s)	456, 688, 738
BspFNI	CGCG	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	4 cut(s)	303, 564, 670, 720
BssNAI	GTATAC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	846
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	301, 665
Bst4CI	ACNGT	2 cut(s)	97, 775
Bst6I	CTCTTC	2 cut(s)	189, 278
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	3 cut(s)	142, 172, 637
BstDEI	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	214, 416
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	4 cut(s)	306, 567, 673, 723
BstMAI	GTCTC	2 cut(s)	248, 460
BstMBI	GATC	4 cut(s)	303, 564, 670, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 508
BstNI	CCWGG	2 cut(s)	301, 665
BstSCI	CCNGG	2 cut(s)	299, 663
BstSFI	CTRYAG	1 cut(s)	753
BstSNI	TACGTA	3 cut(s)	142, 172, 637
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	230, 841
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	29, 36, 299
BtsCI	GGATG	2 cut(s)	214, 416
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	84, 762
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	2 cut(s)	235, 325
Csp6I	GTAC	2 cut(s)	169, 726
CviAII	CATG	5 cut(s)	352, 499, 543, 793, 823
CviQI	GTAC	2 cut(s)	169, 726
DdeI	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
DpnI	GATC	4 cut(s)	305, 566, 672, 722
DpnII	GATC	4 cut(s)	303, 564, 670, 720
Eam1104I	CTCTTC	2 cut(s)	189, 278
EarI	CTCTTC	2 cut(s)	189, 278
Eco105I	TACGTA	3 cut(s)	142, 172, 637
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	299, 663
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	5 cut(s)	355, 502, 546, 796, 826
FatI	CATG	5 cut(s)	351, 498, 542, 792, 822
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	2 cut(s)	174, 642
Fnu4HI	GCNGC	2 cut(s)	244, 855
FokI	GGATG	2 cut(s)	221, 423
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	244, 855
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	244, 855
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	29, 36, 299
HgaI	GACGC	2 cut(s)	235, 325
Hin1II	CATG	5 cut(s)	355, 502, 546, 796, 826
HinfI	GANTC	4 cut(s)	367, 748, 760, 766
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	5 cut(s)	100, 175, 634, 643, 778
Hpy188I	TCNGA	3 cut(s)	564, 697, 765
Hpy188III	TCNNGA	4 cut(s)	154, 463, 686, 740
Hpy8I	GTNNAC	5 cut(s)	100, 175, 634, 643, 778
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	113, 289
HpyCH4III	ACNGT	2 cut(s)	97, 775
HpyCH4IV	ACGT	4 cut(s)	141, 171, 394, 636
HpyCH4V	TGCA	3 cut(s)	536, 653, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 508
HpyF3I	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
HpySE526I	ACGT	4 cut(s)	141, 171, 394, 636
Hsp92II	CATG	5 cut(s)	355, 502, 546, 796, 826
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	303, 564, 670, 720
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	230, 841
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	4 cut(s)	141, 171, 394, 636
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	305, 566, 672, 722
MboI	GATC	4 cut(s)	303, 564, 670, 720
MboII	GAAGA	7 cut(s)	58, 206, 265, 541, 598, 680, 730
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	153, 702
MluCI	AATT	4 cut(s)	144, 659, 689, 816
MlyI	GAGTC	2 cut(s)	361, 757
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	5 cut(s)	47, 194, 199, 281, 462
MroXI	GAANNNNTTC	3 cut(s)	123, 338, 804
MseI	TTAA	2 cut(s)	189, 399
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	301, 665
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	301, 665
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	42, 508
NdeII	GATC	4 cut(s)	303, 564, 670, 720
NlaIII	CATG	5 cut(s)	355, 502, 546, 796, 826
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	3 cut(s)	123, 338, 804
PfeI	GAWTC	2 cut(s)	760, 766
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	2 cut(s)	245, 856
PleI	GAGTC	2 cut(s)	361, 756
PpsI	GAGTC	2 cut(s)	361, 756
Ppu21I	YACGTR	3 cut(s)	142, 172, 637
Psp6I	CCWGG	2 cut(s)	299, 663
PspGI	CCWGG	2 cut(s)	299, 663
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	170, 727
RsaNI	GTAC	2 cut(s)	169, 726
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	189, 399
SatI	GCNGC	2 cut(s)	244, 855
Sau3AI	GATC	4 cut(s)	303, 564, 670, 720
Sau96I	GGNCC	1 cut(s)	480
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	2 cut(s)	361, 757
ScrFI	CCNGG	2 cut(s)	301, 665
SduI	GDGCHC	2 cut(s)	153, 702
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	154, 188
SmoI	CTYRAG	2 cut(s)	154, 188
SnaBI	TACGTA	3 cut(s)	142, 172, 637
Sse9I	AATT	4 cut(s)	144, 659, 689, 816
SsiI	CCGC	3 cut(s)	312, 509, 629
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	299, 663
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	97, 775
TaiI	ACGT	4 cut(s)	144, 174, 397, 639
TasI	AATT	4 cut(s)	144, 659, 689, 816
TatI	WGTACW	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	760, 766
Tru1I	TTAA	2 cut(s)	189, 399
Tru9I	TTAA	2 cut(s)	189, 399
TscAI	CASTG	2 cut(s)	84, 762
TseI	GCWGC	2 cut(s)	243, 854
TspDTI	ATGAA	2 cut(s)	487, 731
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	2 cut(s)	84, 762
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	659
XmiI	GTMKAC	2 cut(s)	174, 642
XmnI	GAANNNNTTC	3 cut(s)	123, 338, 804
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.