Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8178114 .. 8179433

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCATTCATCAACCATTGACTTTGGCTTTTGGCCTCTTAGCCAACATCATCTCCTTTATGGTTTTCCTTGATCCAATGCCAACCTTTAATACAATTTACAAGAAAAAAACAACGGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTCAAACAGGACGCCACATTGCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCCTACCTTGCTATTTTCCTTTTTTATGCCCCCAAGATGGCCAGGATCTCAACTTTGAAACTTCTGCTGTTGCTCAACGTGTTCAGATATGGCTTGATGCCTGTGCTGACTCTCTTTCTTACGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCAAACCGTGTTTGCTGCACCTCTATGCATCTCGAAAAAAGTGATACGGACCAAGGGTGTTGAGTTCATGCCATTTCTTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGAGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGAGGAGCCAAGCAAGGTTCAGGAGCTATCAGACGATATTACTGAGGTGCTGAATGTCAGCACCATGGTGTGTCCACACCTAACCCCAGTGGTTCTTCAGCCAAATGACATTAACCTCATTGAAGTAGTACTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

264

Amino Acids

29.88

Weight (kDa)

9.11

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	2.7e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 216	1.5e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	68, 299, 410
AcoI	YGGCCR	2 cut(s)	3, 285
AcuI	CTGAAG	2 cut(s)	139, 737
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	632, 651, 786
AfiI	CCNNNNNNNGG	2 cut(s)	283, 517
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	128, 304, 418, 779
AjnI	CCWGG	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	159, 572, 682
AluI	AGCT	3 cut(s)	159, 572, 682
Alw26I	GTCTC	2 cut(s)	236, 389
AlwI	GGATC	3 cut(s)	68, 299, 410
AoxI	GGCC	3 cut(s)	3, 34, 285
ApeKI	GCWGC	4 cut(s)	159, 184, 231, 434
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	2 cut(s)	5, 287
BbsI	GAAGAC	1 cut(s)	406
BbvI	GCAGC	4 cut(s)	146, 171, 218, 421
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 389
BisI	GCNGC	4 cut(s)	160, 185, 232, 435
BlsI	GCNGC	4 cut(s)	161, 186, 233, 436
BmcAI	AGTACT	2 cut(s)	651, 786
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	2 cut(s)	596, 737
BmsI	GCATC	2 cut(s)	333, 456
BmuI	ACTGGG	2 cut(s)	596, 737
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	371, 539
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	471, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 517
Bse1I	ACTGG	2 cut(s)	591, 743
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	471, 720
BseLI	CCNNNNNNNGG	2 cut(s)	283, 517
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	591, 743
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	4 cut(s)	146, 171, 218, 421
BsgI	GTGCAG	2 cut(s)	420, 543
BshFI	GGCC	3 cut(s)	5, 36, 287
BslI	CCNNNNNNNGG	2 cut(s)	283, 517
BsmAI	GTCTC	2 cut(s)	236, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	5, 36, 287
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	73, 291, 402
Bsp19I	CCATGG	1 cut(s)	720
BspANI	GGCC	3 cut(s)	5, 36, 287
BspCNI	CTCAG	1 cut(s)	691
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	3 cut(s)	68, 299, 410
BsrDI	GCAATG	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	591, 743
BssECI	CCNNGG	2 cut(s)	471, 720
BssMI	GATC	3 cut(s)	73, 291, 402
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	471, 720
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	40, 699
BstDSI	CCRYGG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	76, 294, 405
BstMAI	GTCTC	2 cut(s)	236, 389
BstMBI	GATC	3 cut(s)	73, 291, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 616
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	146, 171, 218, 421
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	291, 402
BstYI	RGATCY	2 cut(s)	291, 402
BsuRI	GGCC	3 cut(s)	5, 36, 287
BtgI	CCRYGG	1 cut(s)	720
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 750
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	3 cut(s)	206, 223, 371
Csp6I	GTAC	3 cut(s)	631, 650, 785
CviAII	CATG	4 cut(s)	163, 487, 529, 721
CviQI	GTAC	3 cut(s)	631, 650, 785
DdeI	CTNAG	2 cut(s)	40, 699
DpnI	GATC	3 cut(s)	75, 293, 404
DpnII	GATC	3 cut(s)	73, 291, 402
EaeI	YGGCCR	2 cut(s)	3, 285
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	471, 720
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	139, 737
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	471, 720
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	471, 720
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	4 cut(s)	166, 490, 532, 724
FalI	AAGNNNNNCTT	1 cut(s)	771
FatI	CATG	4 cut(s)	162, 486, 528, 720
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	160, 185, 232, 435
Fsp4HI	GCNGC	4 cut(s)	160, 185, 232, 435
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	160, 185, 232, 435
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	5, 36, 287
HgaI	GACGC	3 cut(s)	206, 223, 371
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	166, 490, 532, 724
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	631, 731
Hpy188I	TCNGA	2 cut(s)	332, 688
Hpy188III	TCNNGA	6 cut(s)	451, 511, 529, 656, 677, 792
Hpy8I	GTNNAC	2 cut(s)	631, 731
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	162, 437, 447, 524, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 616
HpyF3I	CTNAG	2 cut(s)	40, 699
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	166, 490, 532, 724
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	73, 291, 402
LmnI	GCTCC	2 cut(s)	661, 679
Lsp1109I	GCAGC	4 cut(s)	146, 171, 218, 421
LweI	GCATC	2 cut(s)	333, 456
MaeII	ACGT	1 cut(s)	324
MalI	GATC	3 cut(s)	75, 293, 404
MboI	GATC	3 cut(s)	73, 291, 402
MboII	GAAGA	5 cut(s)	145, 406, 488, 529, 743
MflI	RGATCY	2 cut(s)	291, 402
MlsI	TGGCCA	2 cut(s)	5, 287
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	2 cut(s)	5, 287
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	6 cut(s)	47, 450, 525, 652, 694, 782
Mox20I	TGGCCA	2 cut(s)	5, 287
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	2 cut(s)	5, 287
MseI	TTAA	2 cut(s)	90, 768
MslI	CAYNNNNRTG	2 cut(s)	442, 722
Msp20I	TGGCCA	2 cut(s)	5, 287
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	254, 616
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	73, 291, 402
NlaIII	CATG	4 cut(s)	166, 490, 532, 724
NlaIV	GGNNCC	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	528
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	161, 186, 233, 436
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	291, 402
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	632, 651, 786
RsaNI	GTAC	3 cut(s)	631, 650, 785
RseI	CAYNNNNRTG	2 cut(s)	442, 722
SaqAI	TTAA	2 cut(s)	90, 768
SatI	GCNGC	4 cut(s)	160, 185, 232, 435
Sau3AI	GATC	3 cut(s)	73, 291, 402
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	2 cut(s)	651, 786
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	333, 456
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	442, 722
SmlI	CTYRAG	2 cut(s)	386, 554
SmoI	CTYRAG	2 cut(s)	386, 554
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	471, 720
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	96
TatI	WGTACW	3 cut(s)	630, 649, 784
Tru1I	TTAA	2 cut(s)	90, 768
Tru9I	TTAA	2 cut(s)	90, 768
TscAI	CASTG	2 cut(s)	138, 750
TseI	GCWGC	4 cut(s)	159, 184, 231, 434
TspDTI	ATGAA	2 cut(s)	475, 492
TspGWI	ACGGA	2 cut(s)	131, 481
TspRI	CASTG	2 cut(s)	138, 750
VpaK11BI	GGWCC	1 cut(s)	468
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	2 cut(s)	651, 786
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.