Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

28162839 .. 28164846

Gene Structure 2008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1136600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCCTTCAACACACTTTGAGTTTGGCCTTCGGCCTCTTAGGCAACATCATCTCCCTTTTGGTCTTCCTTGCTCCAGTGCCAACTTTTTATACAATTTACAAGAAAAAAACAACAGAAGGTTTTCAAGCACTTCCATATGTAATAGGGCTGTTGAGTTCAATGCTGTACATATACTATGCCCTCCTTAAGGAAGAGATTAAATATGATGCCACTCTTCTTATCACAATCAACTCGGTTGGCAGCGTCATAGAGACTCTTTACATTTCCCTCTTCCTTTTCTATGCCCCCAAGAAGGCCAGGATCTCAAACGCGACGCTTCTGTTCTTGCTGAACGGTTTTAGTTACGCAGTGATGGTTGTTTTGACTCGCTTTCTAGCCACAGGTGAAATGCGTATTAAGATTGTGGGATGGATTTGTCTTGTGTTCAGCATAAGCGTATTTGTCGCACCTCTTGGTGTCCTGAGACAAGTAATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCGTTATCATTTTTCCTAACATTAGGTGCAGTCGCATGGTTCTTCTATGGTTTTCTGATCAAGGACTTCTACATAGCTTTACCAAACATACTGGGCTTCTTCTTAGGGGTTGTTCAAATGGTGGTTTACATAGTCTACAAGAATGCAAAGGAAGTTCTGGAAGATCAGCCAAAAGGTCAAGAATTATCAGAACACATTATTGATGTGAGGAAGATCAGTACTTTGGTGTGTCCAGAAATGAGCCCTGCAGTGATTCTGCAACCAACTGTGGACATTACAAGTGACATGAATGAAGTGGTTCAAAATATAATTATCATGGCTGAAAAAACAGAAGAAACCAAGGAAGCTGCCATGGATGATGATGCCTCCACCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

296

Amino Acids

33.12

Weight (kDa)

5.8

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 99	3.3e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	5.8e-29	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	314
AclWI	GGATC	1 cut(s)	311
AfaI	GTAC	2 cut(s)	170, 727
AfiI	CCNNNNNNNGG	2 cut(s)	190, 295
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	11, 128, 162, 623, 809
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	2 cut(s)	584, 854
AluI	AGCT	2 cut(s)	584, 854
Alw26I	GTCTC	2 cut(s)	248, 460
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	4 cut(s)	3, 27, 34, 297
ApeKI	GCWGC	2 cut(s)	243, 854
Asp700I	GAANNNNTTC	2 cut(s)	123, 804
AspS9I	GGNCC	2 cut(s)	4, 480
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	255, 841
BccI	CCATC	2 cut(s)	349, 405
BciT130I	CCWGG	1 cut(s)	301
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	248, 460
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	244, 855
BlsI	GCNGC	2 cut(s)	245, 856
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	4, 480
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	199, 859
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	846, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 295
Bse1I	ACTGG	2 cut(s)	77, 603
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	846, 858
BseGI	GGATG	2 cut(s)	416, 868
BseLI	CCNNNNNNNGG	2 cut(s)	190, 295
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	77, 603
BseXI	GCAGC	2 cut(s)	255, 841
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	5, 29, 36, 299
BslI	CCNNNNNNNGG	2 cut(s)	190, 295
BsmAI	GTCTC	2 cut(s)	248, 460
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	4 cut(s)	5, 29, 36, 299
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	303, 564, 670, 720
Bsp19I	CCATGG	1 cut(s)	858
BspANI	GGCC	4 cut(s)	5, 29, 36, 299
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	77, 603
BssECI	CCNNGG	2 cut(s)	846, 858
BssMI	GATC	4 cut(s)	303, 564, 670, 720
BssT1I	CCWWGG	2 cut(s)	846, 858
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	338, 775
Bst6I	CTCTTC	3 cut(s)	189, 222, 278
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	40, 464, 610
BstDSI	CCRYGG	1 cut(s)	858
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	416, 868
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	4 cut(s)	306, 567, 673, 723
BstMAI	GTCTC	2 cut(s)	248, 460
BstMBI	GATC	4 cut(s)	303, 564, 670, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	255, 841
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	5, 29, 36, 299
BtgI	CCRYGG	1 cut(s)	858
BtsCI	GGATG	2 cut(s)	416, 868
BtsI	GCAGTG	2 cut(s)	357, 762
BtsIMutI	CAGTG	3 cut(s)	84, 357, 762
Cfr13I	GGNCC	2 cut(s)	4, 480
CseI	GACGC	2 cut(s)	235, 325
Csp6I	GTAC	2 cut(s)	169, 726
CviAII	CATG	5 cut(s)	499, 543, 793, 823, 859
CviQI	GTAC	2 cut(s)	169, 726
DdeI	CTNAG	3 cut(s)	40, 464, 610
DpnI	GATC	4 cut(s)	305, 566, 672, 722
DpnII	GATC	4 cut(s)	303, 564, 670, 720
Eam1104I	CTCTTC	3 cut(s)	189, 222, 278
EarI	CTCTTC	3 cut(s)	189, 222, 278
Eco130I	CCWWGG	2 cut(s)	846, 858
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	846, 858
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	2 cut(s)	846, 858
FaeI	CATG	5 cut(s)	502, 546, 796, 826, 862
FatI	CATG	5 cut(s)	498, 542, 792, 822, 858
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	244, 855
FokI	GGATG	2 cut(s)	423, 875
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	2 cut(s)	244, 855
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	244, 855
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	5, 29, 36, 299
HgaI	GACGC	2 cut(s)	235, 325
Hin1II	CATG	5 cut(s)	502, 546, 796, 826, 862
HinfI	GANTC	3 cut(s)	256, 367, 760
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	634, 643, 778
Hpy188I	TCNGA	2 cut(s)	564, 697
Hpy188III	TCNNGA	4 cut(s)	463, 665, 686, 740
Hpy8I	GTNNAC	3 cut(s)	634, 643, 778
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	4 cut(s)	17, 40, 113, 289
HpyCH4III	ACNGT	2 cut(s)	338, 775
HpyCH4V	TGCA	4 cut(s)	536, 653, 755, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	40, 464, 610
Hsp92II	CATG	5 cut(s)	502, 546, 796, 826, 862
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	303, 564, 670, 720
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	90, 286, 313, 369, 476, 584, 650, 753, 765
Lsp1109I	GCAGC	2 cut(s)	255, 841
LweI	GCATC	2 cut(s)	199, 859
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	344, 788
MalI	GATC	4 cut(s)	305, 566, 672, 722
MboI	GATC	4 cut(s)	303, 564, 670, 720
MboII	GAAGA	9 cut(s)	58, 206, 209, 265, 541, 598, 680, 730, 851
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	752
MluCI	AATT	3 cut(s)	96, 689, 816
MlyI	GAGTC	2 cut(s)	250, 361
MnlI	CCTC	6 cut(s)	47, 194, 281, 462, 708, 883
MroXI	GAANNNNTTC	2 cut(s)	123, 804
MseI	TTAA	3 cut(s)	189, 201, 399
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	858
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	4 cut(s)	303, 564, 670, 720
NlaIII	CATG	5 cut(s)	502, 546, 796, 826, 862
NmuCI	GTSAC	1 cut(s)	788
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	2 cut(s)	123, 804
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	245, 856
PleI	GAGTC	2 cut(s)	250, 361
PpsI	GAGTC	2 cut(s)	250, 361
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspPI	GGNCC	2 cut(s)	4, 480
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	170, 727
RsaNI	GTAC	2 cut(s)	169, 726
SaqAI	TTAA	3 cut(s)	189, 201, 399
SatI	GCNGC	2 cut(s)	244, 855
Sau3AI	GATC	4 cut(s)	303, 564, 670, 720
Sau96I	GGNCC	2 cut(s)	4, 480
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	2 cut(s)	250, 361
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	752
SetI	ASST	7 cut(s)	124, 388, 454, 535, 586, 685, 856
SfaNI	GCATC	2 cut(s)	199, 859
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	96, 689, 816
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	846, 858
TaaI	ACNGT	2 cut(s)	338, 775
TasI	AATT	3 cut(s)	96, 689, 816
TatI	WGTACW	2 cut(s)	168, 725
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	189, 201, 399
Tru9I	TTAA	3 cut(s)	189, 201, 399
TscAI	CASTG	3 cut(s)	84, 357, 762
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	2 cut(s)	243, 854
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	3 cut(s)	487, 809, 813
TspGWI	ACGGA	2 cut(s)	493, 498
TspRI	CASTG	3 cut(s)	84, 357, 762
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	2 cut(s)	123, 804
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.