Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Reverse (-)

60801095 .. 60802614

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACCATTCATCACCCATTGACTTTGGCTTTTGGCCTCTTAGGCAACATAATCTCCTTTATGGTTTTCCTTGCTCCACTGCCAACCTTTTATACAATTTACAAGAAAAAAACAACAGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTTAAACAAGACGCCACATTTCTCATCACCATCAACTCTGTTGGCTGCGTCATTGAGACTGCTTACCTTGCCATTTTCATTTTTTATGCCCCCCAGATGGCCAGGATCTCAACTGTAAAACTTCTGCTGTTGCTCAACGTGTTTGGATATGGCTTGATGCTTGTGCTTACTCACTTCCTTGCGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCTAACCGTGTTTGCTGCACCTCTATGCATCTTGAAAAAAGTGATACGGACCAAGAGTGTTGAGTTCATGCCGTTTCCTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGTGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGAGGAGCCAAGCAAGGTTCAGGAGCTATCAGACCATATTATTGAGGTGATGAAGATCAGCACCTTGGTATGTCCAGACCTGACCCCAGTGGTTCTTCAGCCAAATGACATTGACCTCATTGAAGTAGTACTTGACCCAAATAATATTATCAAGGAAATCAAGACCGAAGAAACCAAGGAAGACATGGATGATGCCTCCACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

289

Amino Acids

32.68

Weight (kDa)

7.59

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	1.3e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 216	7.5e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	299, 410
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	139, 737
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	632, 651, 786
AfiI	CCNNNNNNNGG	2 cut(s)	283, 517
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	128, 418, 454, 779
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	159, 572, 682
AluI	AGCT	3 cut(s)	159, 572, 682
Alw26I	GTCTC	2 cut(s)	236, 389
AlwI	GGATC	2 cut(s)	299, 410
AoxI	GGCC	2 cut(s)	34, 285
ApeKI	GCWGC	4 cut(s)	159, 184, 231, 434
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	4 cut(s)	5, 205, 386, 715
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	406, 843
BbvI	GCAGC	4 cut(s)	146, 171, 218, 421
BccI	CCATC	2 cut(s)	224, 277
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 389
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	160, 185, 232, 435
BlsI	GCNGC	4 cut(s)	161, 186, 233, 436
BmcAI	AGTACT	2 cut(s)	651, 786
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	2 cut(s)	596, 737
BmsI	GCATC	3 cut(s)	333, 456, 838
BmuI	ACTGGG	2 cut(s)	596, 737
BpiI	GAAGAC	2 cut(s)	406, 843
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	371, 539
BsaBI	GATNNNNATC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	720, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 517
Bse1I	ACTGG	2 cut(s)	591, 743
Bse8I	GATNNNNATC	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	720, 831
BseGI	GGATG	1 cut(s)	850
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	283, 517
BseNI	ACTGG	2 cut(s)	591, 743
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	4 cut(s)	146, 171, 218, 421
BsgI	GTGCAG	2 cut(s)	420, 543
BshFI	GGCC	2 cut(s)	36, 287
BslI	CCNNNNNNNGG	2 cut(s)	283, 517
BsmAI	GTCTC	2 cut(s)	236, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	36, 287
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	291, 402, 711
BspANI	GGCC	2 cut(s)	36, 287
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	2 cut(s)	299, 410
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	591, 743
BssECI	CCNNGG	2 cut(s)	720, 831
BssMI	GATC	3 cut(s)	291, 402, 711
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	720, 831
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	301, 427
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	294, 405, 714
BstMAI	GTCTC	2 cut(s)	236, 389
BstMBI	GATC	3 cut(s)	291, 402, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 254, 616
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	146, 171, 218, 421
BstV2I	GAAGAC	2 cut(s)	406, 843
BstX2I	RGATCY	2 cut(s)	291, 402
BstYI	RGATCY	2 cut(s)	291, 402
BsuRI	GGCC	2 cut(s)	36, 287
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	2 cut(s)	77, 131
BtsIMutI	CAGTG	3 cut(s)	77, 131, 750
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	3 cut(s)	206, 223, 371
Csp6I	GTAC	3 cut(s)	631, 650, 785
CviAII	CATG	4 cut(s)	163, 487, 529, 841
CviQI	GTAC	3 cut(s)	631, 650, 785
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	293, 404, 713
DpnII	GATC	3 cut(s)	291, 402, 711
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	720, 831
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	139, 737
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	720, 831
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	720, 831
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	4 cut(s)	166, 490, 532, 844
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	4 cut(s)	162, 486, 528, 840
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	160, 185, 232, 435
FokI	GGATG	1 cut(s)	857
Fsp4HI	GCNGC	4 cut(s)	160, 185, 232, 435
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	160, 185, 232, 435
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	36, 287
HgaI	GACGC	3 cut(s)	206, 223, 371
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	166, 490, 532, 844
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HphI	GGTGA	4 cut(s)	5, 205, 386, 715
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	6 cut(s)	451, 511, 656, 677, 731, 817
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	301, 427
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	162, 437, 447, 524, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 254, 616
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	166, 490, 532, 844
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	291, 402, 711
LmnI	GCTCC	3 cut(s)	79, 661, 679
Lsp1109I	GCAGC	4 cut(s)	146, 171, 218, 421
LweI	GCATC	3 cut(s)	333, 456, 838
MaeII	ACGT	1 cut(s)	324
MalI	GATC	3 cut(s)	293, 404, 713
MboI	GATC	3 cut(s)	291, 402, 711
MboII	GAAGA	7 cut(s)	145, 406, 529, 721, 743, 836, 848
MflI	RGATCY	2 cut(s)	291, 402
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	7 cut(s)	47, 450, 507, 652, 694, 782, 862
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	442
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	42, 254, 616
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	3 cut(s)	291, 402, 711
NlaIII	CATG	4 cut(s)	166, 490, 532, 844
NlaIV	GGNNCC	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	161, 186, 233, 436
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	291, 402
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	632, 651, 786
RsaNI	GTAC	3 cut(s)	631, 650, 785
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	160, 185, 232, 435
Sau3AI	GATC	3 cut(s)	291, 402, 711
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	2 cut(s)	651, 786
ScrFI	CCNGG	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	333, 456, 838
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	386, 554
SmoI	CTYRAG	2 cut(s)	386, 554
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	96
SspI	AATATT	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	720, 831
TaaI	ACNGT	2 cut(s)	301, 427
TaiI	ACGT	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	1 cut(s)	96
TatI	WGTACW	3 cut(s)	630, 649, 784
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	84, 138, 750
TseI	GCWGC	4 cut(s)	159, 184, 231, 434
TspDTI	ATGAA	4 cut(s)	253, 475, 492, 722
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	3 cut(s)	84, 138, 750
VpaK11BI	GGWCC	1 cut(s)	468
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	2 cut(s)	651, 786
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.