Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

15608102 .. 15609728

Gene Structure 1627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCACTTCACCACACTTTGATTTTGGCCTTTGGCCTCTTAGGCAATATCATCTCCCTTTTGGTCTTTCTTGCTCCAGTGCCAACTTTTTACACAGTTTACAAGAAAAAAACAACTGAAGGGTTTCAAGCACTTCCATATGTAATTGGGCTCTTGAGTTCAATGATGTACATATACTATGCCCTCCTTAAGGAAGAGCTGAAAGAGGATGCCACTCTTGTCATCACAATCAACTCGGTTGGCTGCGTCATAGAGACTATTTACATTTCCCTCTTCCTTTTCTATGCCCCTAAGAAGGCCAGGATCTCAACCGCGATGCTTCTGTTCTTGCTGAACCTTTTCAGTTACGGCATGATGGTTGTTTTGACTCGCTTTCTAGCCACAGGTGAAACACGTTTTAAGATTGTGGGATGGATTTGTCTTGTGTTCAGCCTAAGCGTATTTGTCGCACCTCTTGGTGTCCTGAGACAAGTAATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCGTTATCATTTTTCCTAACATTAGGTGCAGTCGCATGGTTCTTCTATGGTTTTCTGATCAAGGACTACTACATAGCTTTTCCAAACATGCTGGGCTTCCTCTTCGGGGTTGTTCAAATGGTGGTTTACGTAGTCTACAAGAATGCAAAGAAATTCCTGGAAGATCAGCCAAAAGTTCAAGAATTATCTGAGCACATTATTGATGTGATGAAGATCAATACTTCGGTGTGTCCGGAACTGAGTCCTGCAGTGATTTTGAATCCAACTGTGGACATTACAAATGACATGATTGAAGTGGTTCAAAATATAATTGTCATGGCTGAAAAGACAGAAAAAACCAAGGAAGCTGCCATTGATGATGATTTCTCCACCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

296

Amino Acids

33.37

Weight (kDa)

6.83

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	739
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	190, 295, 613
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	7 cut(s)	128, 162, 623, 686, 766, 800, 809
AjnI	CCWGG	2 cut(s)	299, 663
AluBI	AGCT	3 cut(s)	199, 584, 854
AluI	AGCT	3 cut(s)	199, 584, 854
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	2 cut(s)	248, 460
AlwI	GGATC	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	739
AoxI	GGCC	3 cut(s)	27, 34, 297
ApeKI	GCWGC	2 cut(s)	243, 854
ApoI	RAATTY	1 cut(s)	659
Asp700I	GAANNNNTTC	3 cut(s)	123, 338, 804
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	2 cut(s)	230, 841
BccI	CCATC	2 cut(s)	349, 405
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	301, 665
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	248, 460
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	244, 855
BlsI	GCNGC	2 cut(s)	245, 856
Bme1390I	CCNGG	2 cut(s)	301, 665
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	301, 665
BmsI	GCATC	2 cut(s)	199, 306
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 295, 613
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	739
BseBI	CCWGG	2 cut(s)	301, 665
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	2 cut(s)	214, 416
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	3 cut(s)	190, 295, 613
BseMII	CTCAG	3 cut(s)	455, 687, 737
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	230, 841
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	29, 36, 299
BsiHKAI	GWGCWC	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	740
BslI	CCNNNNNNNGG	3 cut(s)	190, 295, 613
BsmAI	GTCTC	2 cut(s)	248, 460
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	29, 36, 299
Bsp1286I	GDGCHC	2 cut(s)	153, 702
Bsp13I	TCCGGA	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	303, 564, 670, 720
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	3 cut(s)	29, 36, 299
BspCNI	CTCAG	3 cut(s)	456, 688, 738
BspEI	TCCGGA	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	4 cut(s)	303, 564, 670, 720
BssT1I	CCWWGG	1 cut(s)	846
Bst2UI	CCWGG	2 cut(s)	301, 665
Bst4CI	ACNGT	2 cut(s)	97, 775
Bst6I	CTCTTC	3 cut(s)	189, 278, 614
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	637
BstDEI	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	214, 416
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	4 cut(s)	306, 567, 673, 723
BstMAI	GTCTC	2 cut(s)	248, 460
BstMBI	GATC	4 cut(s)	303, 564, 670, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	301, 665
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	299, 663
BstSFI	CTRYAG	1 cut(s)	753
BstSNI	TACGTA	1 cut(s)	637
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	230, 841
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	29, 36, 299
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	214, 416
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	84, 762
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	6 cut(s)	352, 499, 543, 595, 793, 823
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
DpnI	GATC	4 cut(s)	305, 566, 672, 722
DpnII	GATC	4 cut(s)	303, 564, 670, 720
Eam1104I	CTCTTC	3 cut(s)	189, 278, 614
EarI	CTCTTC	3 cut(s)	189, 278, 614
Eco105I	TACGTA	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	299, 663
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	6 cut(s)	355, 502, 546, 598, 796, 826
FatI	CATG	6 cut(s)	351, 498, 542, 594, 792, 822
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	244, 855
FokI	GGATG	2 cut(s)	221, 423
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	244, 855
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	244, 855
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	29, 36, 299
HapII	CCGG	1 cut(s)	740
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	6 cut(s)	355, 502, 546, 598, 796, 826
HinfI	GANTC	3 cut(s)	367, 748, 766
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	4 cut(s)	100, 634, 643, 778
Hpy188I	TCNGA	2 cut(s)	564, 697
Hpy188III	TCNNGA	4 cut(s)	154, 463, 686, 740
Hpy8I	GTNNAC	4 cut(s)	100, 634, 643, 778
HpyAV	CCTTC	2 cut(s)	113, 289
HpyCH4III	ACNGT	2 cut(s)	97, 775
HpyCH4IV	ACGT	2 cut(s)	394, 636
HpyCH4V	TGCA	3 cut(s)	536, 653, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	6 cut(s)	40, 291, 434, 464, 696, 746
HpySE526I	ACGT	2 cut(s)	394, 636
Hsp92II	CATG	6 cut(s)	355, 502, 546, 598, 796, 826
Kpn2I	TCCGGA	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	303, 564, 670, 720
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	230, 841
LweI	GCATC	2 cut(s)	199, 306
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	394, 636
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	305, 566, 672, 722
MboI	GATC	4 cut(s)	303, 564, 670, 720
MboII	GAAGA	6 cut(s)	206, 265, 541, 601, 680, 730
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	153, 702
MluCI	AATT	4 cut(s)	144, 659, 689, 816
MlyI	GAGTC	2 cut(s)	361, 757
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	6 cut(s)	47, 194, 199, 281, 462, 617
MroI	TCCGGA	1 cut(s)	739
MroXI	GAANNNNTTC	3 cut(s)	123, 338, 804
MseI	TTAA	2 cut(s)	189, 399
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	2 cut(s)	301, 665
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	301, 665
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	4 cut(s)	303, 564, 670, 720
NlaIII	CATG	6 cut(s)	355, 502, 546, 598, 796, 826
NspI	RCATGY	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	3 cut(s)	123, 338, 804
PfeI	GAWTC	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	2 cut(s)	245, 856
PleI	GAGTC	2 cut(s)	361, 756
PpsI	GAGTC	2 cut(s)	361, 756
Ppu21I	YACGTR	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	299, 663
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	299, 663
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	189, 399
SatI	GCNGC	2 cut(s)	244, 855
Sau3AI	GATC	4 cut(s)	303, 564, 670, 720
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	2 cut(s)	361, 757
ScrFI	CCNGG	2 cut(s)	301, 665
SduI	GDGCHC	2 cut(s)	153, 702
SetI	ASST	9 cut(s)	201, 339, 388, 397, 454, 535, 586, 639, 856
SfaNI	GCATC	2 cut(s)	199, 306
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	154, 188
SmoI	CTYRAG	2 cut(s)	154, 188
SnaBI	TACGTA	1 cut(s)	637
Sse9I	AATT	4 cut(s)	144, 659, 689, 816
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	299, 663
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	97, 775
TaiI	ACGT	2 cut(s)	397, 639
TasI	AATT	4 cut(s)	144, 659, 689, 816
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	766
Tru1I	TTAA	2 cut(s)	189, 399
Tru9I	TTAA	2 cut(s)	189, 399
TscAI	CASTG	2 cut(s)	84, 762
TseI	GCWGC	2 cut(s)	243, 854
TspDTI	ATGAA	2 cut(s)	487, 731
TspGWI	ACGGA	2 cut(s)	493, 498
TspRI	CASTG	2 cut(s)	84, 762
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	3 cut(s)	123, 338, 804
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.