Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

34118819 .. 34119587

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCATTCATCACCCGGTGACTTTGGCTTTTGGCCTCTTAGGCAACATCATCTCCTTTATGGTTTTCCTTGCTCCAATGCCAACCTTTTATACAATTTACAAGAAAAAAACAACGGAAGGGGTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGAGGATTTACCATGCGCTGCTTAAACAGGACGCCACATTTCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCCTACCTTGCTATTTTCCTTTTTTATGCTCCCAAGATGGCCAGGGTACATCTCAACTGTGGAACTTATGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGCTTGTGCTGACTCTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

123

Amino Acids

13.74

Weight (kDa)

8.98

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	4.2e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 285
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	3 cut(s)	3, 34, 285
ApeKI	GCWGC	3 cut(s)	159, 184, 231
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	5, 31
BalI	TGGCCA	2 cut(s)	5, 287
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	146, 171, 218
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	160, 185, 232
BlsI	GCNGC	3 cut(s)	161, 186, 233
Bme1390I	CCNGG	2 cut(s)	17, 289
BmrFI	CCNGG	2 cut(s)	17, 289
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	146, 171, 218
BshFI	GGCC	3 cut(s)	5, 36, 287
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	5, 36, 287
BspANI	GGCC	3 cut(s)	5, 36, 287
BspCNI	CTCAG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	40, 167
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 254
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	15, 287
BstV1I	GCAGC	3 cut(s)	146, 171, 218
BsuRI	GGCC	3 cut(s)	5, 36, 287
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	184
CseI	GACGC	2 cut(s)	206, 223
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	163, 179
CviJI	RGCY	7 cut(s)	5, 29, 36, 159, 231, 287, 343
CviKI_1	RGCY	7 cut(s)	5, 29, 36, 159, 231, 287, 343
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	40, 167
DraIII	CACNNNGTG	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	3, 285
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	287
FaeI	CATG	2 cut(s)	166, 182
FaiI	YATR	9 cut(s)	62, 93, 139, 141, 164, 180, 273, 315, 340
FatI	CATG	2 cut(s)	162, 178
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	160, 185, 232
Fsp4HI	GCNGC	3 cut(s)	160, 185, 232
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	160, 185, 232
HaeIII	GGCC	3 cut(s)	5, 36, 287
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	2 cut(s)	206, 223
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	166, 182
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	5, 31
Hpy188I	TCNGA	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 254
HpyF3I	CTNAG	2 cut(s)	40, 167
HpySE526I	ACGT	1 cut(s)	328
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	166, 182
HspAI	GCGC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	79, 280
LpnPI	CCDG	4 cut(s)	30, 179, 274, 301
Lsp1109I	GCAGC	3 cut(s)	146, 171, 218
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	145
MlsI	TGGCCA	2 cut(s)	5, 287
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	2 cut(s)	5, 287
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	47, 162
Mox20I	TGGCCA	2 cut(s)	5, 287
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	2 cut(s)	5, 287
MseI	TTAA	2 cut(s)	189, 370
Msp20I	TGGCCA	2 cut(s)	5, 287
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	17, 289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	42, 254
NciI	CCSGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	139
NlaIII	CATG	2 cut(s)	166, 182
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	161, 186, 233
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	189, 370
SatI	GCNGC	3 cut(s)	160, 185, 232
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	17, 289
SetI	ASST	4 cut(s)	89, 161, 255, 331
SfaNI	GCATC	1 cut(s)	337
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	15, 287
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	331
TasI	AATT	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	189, 370
Tru9I	TTAA	2 cut(s)	189, 370
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	159, 184, 231
Tsp45I	GTSAC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	138
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.