Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8704517 .. 8705471

Gene Structure 955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCATTCATCAACCATTGACTTTGGCTTTTGGCCTCTTAGGCAACATCATCTCCTTTATGGTTTTCCTTGATCCAATGCCAACCTTTTATACAATTTACAAGAAAAAACAACGGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTCAAACAGGACGCCACATTGCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCCTACCTTGCTATTTTCCTTTTTTATGCCCCCAAGATGGCCAGGGTACATCTCAACTTTGAAACTTCTGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGACTGTGCTGACTCTCTTTCGTACGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCAAACCGTGTTTGCTGCACCTCTATGCATCTCGGTAAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

155

Amino Acids

17.6

Weight (kDa)

10.01

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	68, 413
AcoI	YGGCCR	2 cut(s)	3, 284
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	293, 370
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	127, 307, 421
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	235, 392
AlwI	GGATC	2 cut(s)	68, 413
AoxI	GGCC	3 cut(s)	3, 34, 284
ApeKI	GCWGC	4 cut(s)	158, 183, 230, 437
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	389
BalI	TGGCCA	2 cut(s)	5, 286
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	4 cut(s)	145, 170, 217, 424
BccI	CCATC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	235, 392
BfaI	CTAG	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	159, 184, 231, 438
BlsI	GCNGC	4 cut(s)	160, 185, 232, 439
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	145, 170, 217, 424
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	5, 36, 286
BsiWI	CGTACG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	235, 392
BsmBI	CGTCTC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	5, 36, 286
Bsp143I	GATC	2 cut(s)	73, 405
BspANI	GGCC	3 cut(s)	5, 36, 286
BspPI	GGATC	2 cut(s)	68, 413
BsrDI	GCAATG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	73, 405
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	352, 430
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	76, 408
BstMAI	GTCTC	2 cut(s)	235, 392
BstMBI	GATC	2 cut(s)	73, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 253
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	4 cut(s)	145, 170, 217, 424
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	5, 36, 286
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	3 cut(s)	205, 222, 374
Csp6I	GTAC	2 cut(s)	292, 369
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	5, 29, 36, 158, 230, 286, 342, 402
CviKI_1	RGCY	8 cut(s)	5, 29, 36, 158, 230, 286, 342, 402
CviQI	GTAC	2 cut(s)	292, 369
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	75, 407
DpnII	GATC	2 cut(s)	73, 405
EaeI	YGGCCR	2 cut(s)	3, 284
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	165
FaiI	YATR	9 cut(s)	62, 93, 138, 140, 163, 179, 272, 339, 448
FatI	CATG	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	159, 184, 231, 438
Fsp4HI	GCNGC	4 cut(s)	159, 184, 231, 438
FspBI	CTAG	1 cut(s)	466
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	159, 184, 231, 438
HaeIII	GGCC	3 cut(s)	5, 36, 286
HgaI	GACGC	3 cut(s)	205, 222, 374
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	352, 430
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	161, 440, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 253
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	73, 405
LpnPI	CCDG	4 cut(s)	178, 273, 300, 388
Lsp1109I	GCAGC	4 cut(s)	145, 170, 217, 424
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	1 cut(s)	466
MaeII	ACGT	1 cut(s)	327
MalI	GATC	2 cut(s)	75, 407
MboI	GATC	2 cut(s)	73, 405
MboII	GAAGA	2 cut(s)	144, 409
MflI	RGATCY	1 cut(s)	405
MlsI	TGGCCA	2 cut(s)	5, 286
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	2 cut(s)	5, 286
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	2 cut(s)	47, 453
Mox20I	TGGCCA	2 cut(s)	5, 286
Mph1103I	ATGCAT	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	2 cut(s)	5, 286
MslI	CAYNNNNRTG	1 cut(s)	445
Msp20I	TGGCCA	2 cut(s)	5, 286
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	42, 253
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	73, 405
NlaIII	CATG	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	452
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	122
Pfl23II	CGTACG	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	160, 185, 232, 439
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspLI	CGTACG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	293, 370
RsaNI	GTAC	2 cut(s)	292, 369
RseI	CAYNNNNRTG	1 cut(s)	445
SatI	GCNGC	4 cut(s)	159, 184, 231, 438
Sau3AI	GATC	2 cut(s)	73, 405
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	8 cut(s)	89, 160, 254, 330, 379, 396, 445, 467
SfaNI	GCATC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	352, 430
TaiI	ACGT	1 cut(s)	330
TasI	AATT	1 cut(s)	96
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	4 cut(s)	158, 183, 230, 437
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	137
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.