Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8881842 .. 8882328

Gene Structure 487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGGCCAACCTTTTATACAATTTACAAGAAAAAACAACGGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTCAAACAGGACGCCACATTGCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCCTACCTTGCTATTTTCCTTTTTTATGCCCCCAAGATGGCCAGGATCTCAACTTTGAAACTTCTGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGACTGTGCTGACTCTCTTTCGTACGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCAAACCGTGTTTGCTGCACCTCTATGCATCTCGGTAAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

9.14

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 69	1.6e-17	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	224, 335
AcoI	YGGCCR	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	53, 229, 343
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	161, 314
AlwI	GGATC	2 cut(s)	224, 335
AoxI	GGCC	2 cut(s)	6, 210
ApeKI	GCWGC	4 cut(s)	84, 109, 156, 359
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	4 cut(s)	71, 96, 143, 346
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	161, 314
BfaI	CTAG	1 cut(s)	388
BisI	GCNGC	4 cut(s)	85, 110, 157, 360
BlsI	GCNGC	4 cut(s)	86, 111, 158, 361
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	71, 96, 143, 346
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	8, 212
BsiWI	CGTACG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	161, 314
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	8, 212
Bsp143I	GATC	2 cut(s)	216, 327
BspANI	GGCC	2 cut(s)	8, 212
BspPI	GGATC	2 cut(s)	224, 335
BsrDI	GCAATG	1 cut(s)	128
BssMI	GATC	2 cut(s)	216, 327
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	274, 352
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	6, 89
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	219, 330
BstMAI	GTCTC	2 cut(s)	161, 314
BstMBI	GATC	2 cut(s)	216, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	212
BstV1I	GCAGC	4 cut(s)	71, 96, 143, 346
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	216, 327
BstYI	RGATCY	2 cut(s)	216, 327
BsuRI	GGCC	2 cut(s)	8, 212
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	6, 89
CfoI	GCGC	1 cut(s)	109
CseI	GACGC	3 cut(s)	131, 148, 296
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	8, 84, 156, 212, 264, 324
CviKI_1	RGCY	6 cut(s)	8, 84, 156, 212, 264, 324
CviQI	GTAC	1 cut(s)	291
DpnI	GATC	2 cut(s)	218, 329
DpnII	GATC	2 cut(s)	216, 327
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	91
FaiI	YATR	8 cut(s)	19, 64, 66, 89, 105, 198, 261, 370
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	85, 110, 157, 360
Fsp4HI	GCNGC	4 cut(s)	85, 110, 157, 360
FspBI	CTAG	1 cut(s)	388
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	4 cut(s)	85, 110, 157, 360
HaeIII	GGCC	2 cut(s)	8, 212
HgaI	GACGC	3 cut(s)	131, 148, 296
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	274, 352
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	4, 87, 362, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	216, 327
LpnPI	CCDG	4 cut(s)	104, 199, 226, 310
Lsp1109I	GCAGC	4 cut(s)	71, 96, 143, 346
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	388
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	218, 329
MboI	GATC	2 cut(s)	216, 327
MboII	GAAGA	2 cut(s)	70, 331
MflI	RGATCY	2 cut(s)	216, 327
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	1 cut(s)	375
Mox20I	TGGCCA	1 cut(s)	212
Mph1103I	ATGCAT	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	367
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	216, 327
NlaIII	CATG	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	48
Pfl23II	CGTACG	1 cut(s)	290
PkrI	GCNGC	4 cut(s)	86, 111, 158, 361
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspLI	CGTACG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	216, 327
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	367
SatI	GCNGC	4 cut(s)	85, 110, 157, 360
Sau3AI	GATC	2 cut(s)	216, 327
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	8 cut(s)	15, 86, 180, 252, 301, 318, 367, 389
SfaNI	GCATC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	274, 352
TaiI	ACGT	1 cut(s)	252
TasI	AATT	1 cut(s)	22
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	4 cut(s)	84, 109, 156, 359
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.