Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

8187941 .. 8189443

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACTATTCATCACCCATTGACTTTGGCTTTTGGCCTCTTAGGCAACATTATCTCCTTTATGGTTTTCCTTGCTCCACTGCCAACCTTTTATACAATTTACAAGAAAAAAACAACTGAAGGGTTTCAAGCACTGCCATATGTGGTGGCACTCTTCAGCTGCATGCTGTGGATTTACTATGCGCTGCTTAAACAAGACGCCACATTTCTCATCACTATCAACTCTGTTGGCTGCGTCATTGAGACTGCTTACCTTGCCATTTTCCTTTTTTATTCCCCCAAGATGGCCAGGATCTCAACTGTAAAACTTCTGCTGTTGCTCAACGTGTTCGGATATGGCTTGATGCTTGTGCTTACTCACTTCCTTGCGAAAGGTGAAAAGCGTCTCAAGGTTGTGGGCTGGATCTGTCTTGTCTTCAATCAAACCGTGTTTGCTGCACCTCTATGCATCTCGGGTGTTGAGTTCATGCTATTTCTTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGAGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGAGGAGCCAAGCAAGGTTCAGGAGCTATCAGACGATATTACTGAGGTGCTGAATATCAGCACATGGTGTCCAAATGACATTAACCTCATTGAAGTAGTACTTGACCCAAATAATATTATCAAGGAAATCAAGACCGAAGAAACCAAGGAAGACATGGATGATGCCTCCACTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

271

Amino Acids

30.74

Weight (kDa)

6.31

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	9.5e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 209	3e-12	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	299, 410
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	138, 139
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	702
AfaI	GTAC	3 cut(s)	611, 630, 735
AfiI	CCNNNNNNNGG	2 cut(s)	283, 496
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	128, 418, 728
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	159, 551, 661
AluI	AGCT	3 cut(s)	159, 551, 661
Alw26I	GTCTC	2 cut(s)	236, 389
AlwI	GGATC	2 cut(s)	299, 410
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	2 cut(s)	34, 285
ApeKI	GCWGC	4 cut(s)	159, 184, 231, 434
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	5, 386
AvaI	CYCGRG	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	406, 792
BbvI	GCAGC	4 cut(s)	146, 171, 218, 421
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	236, 389
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	160, 185, 232, 435
BlsI	GCNGC	4 cut(s)	161, 186, 233, 436
BmcAI	AGTACT	2 cut(s)	630, 735
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	3 cut(s)	333, 456, 787
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	406, 792
BpmI	CTGGAG	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	371, 518
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 496
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	283, 496
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	4 cut(s)	146, 171, 218, 421
BsgI	GTGCAG	2 cut(s)	420, 522
BshFI	GGCC	2 cut(s)	36, 287
BsiHKCI	CYCGRG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	283, 496
BsmAI	GTCTC	2 cut(s)	236, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	36, 287
BsoBI	CYCGRG	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	291, 402
BspANI	GGCC	2 cut(s)	36, 287
BspCNI	CTCAG	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	642
BspPI	GGATC	2 cut(s)	299, 410
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	2 cut(s)	291, 402
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	301, 427
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	40, 678
BstF5I	GGATG	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	294, 405
BstMAI	GTCTC	2 cut(s)	236, 389
BstMBI	GATC	2 cut(s)	291, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 254, 595
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	146, 171, 218, 421
BstV2I	GAAGAC	2 cut(s)	406, 792
BstX2I	RGATCY	2 cut(s)	291, 402
BstYI	RGATCY	2 cut(s)	291, 402
BsuRI	GGCC	2 cut(s)	36, 287
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	2 cut(s)	77, 131
BtsIMutI	CAGTG	2 cut(s)	77, 131
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	184
CseI	GACGC	3 cut(s)	206, 223, 371
Csp6I	GTAC	3 cut(s)	610, 629, 734
CviAII	CATG	5 cut(s)	163, 466, 508, 699, 790
CviQI	GTAC	3 cut(s)	610, 629, 734
DdeI	CTNAG	2 cut(s)	40, 678
DpnI	GATC	2 cut(s)	293, 404
DpnII	GATC	2 cut(s)	291, 402
DraIII	CACNNNGTG	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	780
Eco57I	CTGAAG	2 cut(s)	138, 139
Eco88I	CYCGRG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	5 cut(s)	166, 469, 511, 702, 793
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FatI	CATG	5 cut(s)	162, 465, 507, 698, 789
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	160, 185, 232, 435
FokI	GGATG	1 cut(s)	806
Fsp4HI	GCNGC	4 cut(s)	160, 185, 232, 435
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	160, 185, 232, 435
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	36, 287
HgaI	GACGC	3 cut(s)	206, 223, 371
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	166, 469, 511, 702, 793
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HphI	GGTGA	2 cut(s)	5, 386
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	332, 667
Hpy188III	TCNNGA	5 cut(s)	490, 508, 635, 656, 766
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	301, 427
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	162, 437, 447, 503, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 254, 595
HpyF3I	CTNAG	2 cut(s)	40, 678
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	166, 469, 511, 702, 793
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	291, 402
LmnI	GCTCC	3 cut(s)	79, 640, 658
LpnPI	CCDG	7 cut(s)	274, 301, 385, 503, 551, 620, 641
Lsp1109I	GCAGC	4 cut(s)	146, 171, 218, 421
LweI	GCATC	3 cut(s)	333, 456, 787
MaeII	ACGT	1 cut(s)	324
MalI	GATC	2 cut(s)	293, 404
MboI	GATC	2 cut(s)	291, 402
MboII	GAAGA	6 cut(s)	145, 406, 467, 508, 785, 797
MflI	RGATCY	2 cut(s)	291, 402
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	287
MnlI	CCTC	7 cut(s)	47, 450, 504, 631, 673, 731, 811
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	189, 717
MslI	CAYNNNNRTG	1 cut(s)	442
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	42, 254, 595
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	291, 402
NlaIII	CATG	5 cut(s)	166, 469, 511, 702, 793
NlaIV	GGNNCC	1 cut(s)	642
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	507
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	161, 186, 233, 436
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	642
PsuI	RGATCY	2 cut(s)	291, 402
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	611, 630, 735
RsaNI	GTAC	3 cut(s)	610, 629, 734
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	189, 717
SatI	GCNGC	4 cut(s)	160, 185, 232, 435
Sau3AI	GATC	2 cut(s)	291, 402
ScaI	AGTACT	2 cut(s)	630, 735
ScrFI	CCNGG	1 cut(s)	289
SfaNI	GCATC	3 cut(s)	333, 456, 787
SmiMI	CAYNNNNRTG	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	386, 533
SmoI	CTYRAG	2 cut(s)	386, 533
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	96
SspI	AATATT	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	2 cut(s)	301, 427
TaiI	ACGT	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	1 cut(s)	96
TatI	WGTACW	3 cut(s)	609, 628, 733
Tru1I	TTAA	2 cut(s)	189, 717
Tru9I	TTAA	2 cut(s)	189, 717
TscAI	CASTG	2 cut(s)	84, 138
TseI	GCWGC	4 cut(s)	159, 184, 231, 434
TspDTI	ATGAA	2 cut(s)	454, 471
TspRI	CASTG	2 cut(s)	84, 138
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	2 cut(s)	630, 735
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.