Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009172

Physical Location & Seq

Genomic Coordinates Forward (+)

13456636 .. 13458837

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G146500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCCATTCAACATCCTTTGACTTTGTCCTTTGGCCTCTTAGGCAACATCATCTCCTTCTTGGTCTTCCTTGCTCCAGTGCCAACATTTTATACAATATACAAGAGAAAAACTGCTGAAGGGTTTCAAGCACTTCCATATGTAATAGCCCTCTTGAGTTCAATGCTGTACATATACTATGCTCTCCTCAAAGAAGAGTTCAAAGAAGATGCCACTTTTCTCATCACAATCAACTCATTTGGCTGCGTCGTAGAGACTCTTTACATTTCCCTATTTCTTTTCTATGCCCCTAAGAAAGCCAGGATCTCAACCCTGACGCTTGTGTTCTTGCTGAACCTTTTCGGTTTCGGCTTGATGATGCTATTGACTCACTTTCTAGCCACAGGTGAAATGCGGCTTAAGATTGTGGGATGGATTTGTCTTGTCTTCAGTCTAAGCGTATTCGTTGCACCTCTTGGCGTCCTGAGACGAGTAATACGGACCAAGAGTGTTGAGTTCATGCCATTTCCATTATCATTTTTCCTAACATTAGGTGCTGTCACGTGGTTCTTCTATGGTCTTCTGATCAAGGACTACAACATAGCTTTTCCAAACATACTGGGCTTCCTCTTTGGGATTGCTCAAATGGTGCTTTACATAGTCTACAAGAACACCAAGAAAGTTCTGGAGGAGCAGCCGAAAGTGCAAGAATTATCGGAACATATTATTGATGTGGTGAAGATCAGTTCCCTGGTGTGCCCAGAACTAAACCCAGTGGTTCTGCAGCCAACTCTGGATATTACAAATGACATGATCGAAGCGGTTCAGAATATAATCGTGATGGCTGAAAAGACTGAAGAAGCCAAGGAAGCCATGGATATTGATGCCTCCACCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

294

Amino Acids

33.18

Weight (kDa)

6.33

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50790
fragaria_vesca	FvH4_5g08962
malus_domestica	MD06G1136600.v1.1 MD14G1151400.v1.1
prunus_persica	Prupe.5G146500_v2.0.a1
pyrus_communis	pycom06g12780 pycom14g12620
rosa_chinensis	RchiOBHm_Chr7g0189341 RchiOBHm_Chr7g0189371
rosa_laevigata	RLG00000004617
rosa_multiflora	Rmu_sc0001282.1_g000004 Rmu_sc0001282.1_g000012
rosa_roxburghii	Rroxscaffold_3G00265520 Rroxscaffold_5G00355460
rosa_rugosa	Rorug06G0497300
rosa_samantha	Rh7AG102300 Rh7BG104900 Rh7CG106400 Rh7CG106700 Rh7DG103900 Rh7DG104200
rosa_wichuraiana	Rw7G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	2 cut(s)	394, 800
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	3 cut(s)	138, 412, 855
AcvI	CACGTG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	11, 128, 162, 202
AjnI	CCWGG	2 cut(s)	299, 729
AluBI	AGCT	1 cut(s)	584
AluI	AGCT	1 cut(s)	584
Alw26I	GTCTC	2 cut(s)	248, 460
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	3, 34
ApeKI	GCWGC	3 cut(s)	243, 673, 763
Asp700I	GAANNNNTTC	3 cut(s)	123, 338, 801
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	398, 727
AvaII	GGWCC	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	543
BbsI	GAAGAC	3 cut(s)	58, 418, 551
BbvI	GCAGC	3 cut(s)	230, 685, 775
BccI	CCATC	2 cut(s)	405, 814
BciT130I	CCWGG	2 cut(s)	301, 731
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	248, 460
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	761
BfrI	CTTAAG	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	244, 395, 674, 764
BlsI	GCNGC	4 cut(s)	245, 396, 675, 765
Bme1390I	CCNGG	2 cut(s)	301, 731
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmrFI	CCNGG	2 cut(s)	301, 731
BmrI	ACTGGG	2 cut(s)	608, 746
BmsI	GCATC	3 cut(s)	199, 348, 853
BmuI	ACTGGG	2 cut(s)	608, 746
BpiI	GAAGAC	3 cut(s)	58, 418, 551
BpmI	CTGGAG	2 cut(s)	60, 686
BpuEI	CTTGAG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	729, 843, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	3 cut(s)	77, 603, 752
BseBI	CCWGG	2 cut(s)	301, 731
BseDI	CCNNGG	3 cut(s)	729, 843, 852
BseGI	GGATG	2 cut(s)	13, 416
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	3 cut(s)	77, 603, 752
BseRI	GAGGAG	2 cut(s)	176, 683
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	3 cut(s)	230, 685, 775
BshFI	GGCC	2 cut(s)	5, 36
BsmAI	GTCTC	2 cut(s)	248, 460
BsmBI	CGTCTC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	5, 36
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	303, 564, 720, 792
Bsp19I	CCATGG	1 cut(s)	852
BspACI	CCGC	2 cut(s)	394, 800
BspANI	GGCC	2 cut(s)	5, 36
BspCNI	CTCAG	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	765
BspPI	GGATC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	77, 603, 752
BssECI	CCNNGG	3 cut(s)	729, 843, 852
BssMI	GATC	4 cut(s)	303, 564, 720, 792
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	843, 852
Bst2UI	CCWGG	2 cut(s)	301, 731
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	459
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	40, 291, 434, 464
BstDSI	CCRYGG	1 cut(s)	852
BstF5I	GGATG	2 cut(s)	13, 416
BstKTI	GATC	4 cut(s)	306, 567, 723, 795
BstMAI	GTCTC	2 cut(s)	248, 460
BstMBI	GATC	4 cut(s)	303, 564, 720, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 682, 848
BstNI	CCWGG	2 cut(s)	301, 731
BstSCI	CCNGG	2 cut(s)	299, 729
BstSFI	CTRYAG	1 cut(s)	761
BstSLI	GKGCMC	1 cut(s)	740
BstV1I	GCAGC	3 cut(s)	230, 685, 775
BstV2I	GAAGAC	3 cut(s)	58, 418, 551
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	5, 36
BtgI	CCRYGG	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	13, 416
BtsIMutI	CAGTG	2 cut(s)	84, 759
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	3 cut(s)	235, 325, 448
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	499, 790, 853
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	40, 291, 434, 464
DpnI	GATC	4 cut(s)	305, 566, 722, 794
DpnII	GATC	4 cut(s)	303, 564, 720, 792
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	843, 852
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	3 cut(s)	138, 412, 855
Eco72I	CACGTG	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	299, 729
EcoT14I	CCWWGG	2 cut(s)	843, 852
ErhI	CCWWGG	2 cut(s)	843, 852
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	3 cut(s)	502, 793, 856
FatI	CATG	3 cut(s)	498, 789, 852
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	4 cut(s)	244, 395, 674, 764
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	244, 395, 674, 764
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	4 cut(s)	244, 395, 674, 764
GsuI	CTGGAG	2 cut(s)	60, 686
HaeIII	GGCC	2 cut(s)	5, 36
HgaI	GACGC	3 cut(s)	235, 325, 448
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	502, 793, 856
HinfI	GANTC	2 cut(s)	256, 367
HphI	GGTGA	2 cut(s)	398, 727
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	3 cut(s)	564, 697, 807
Hpy188III	TCNNGA	5 cut(s)	154, 463, 665, 773, 817
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	67, 113
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	449, 685, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 682, 848
HpyF3I	CTNAG	4 cut(s)	40, 291, 434, 464
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	502, 793, 856
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	303, 564, 720, 792
LmnI	GCTCC	2 cut(s)	79, 670
Lsp1109I	GCAGC	3 cut(s)	230, 685, 775
LweI	GCATC	3 cut(s)	199, 348, 853
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	305, 566, 722, 794
MboI	GATC	4 cut(s)	303, 564, 720, 792
MboII	GAAGA	8 cut(s)	58, 206, 218, 418, 541, 551, 730, 848
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	250, 361
MnlI	CCTC	7 cut(s)	47, 161, 197, 462, 617, 661, 877
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	123, 338, 801
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	399, 880
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	301, 731
MvaI	CCWGG	2 cut(s)	301, 731
MwoI	GCNNNNNNNGC	3 cut(s)	42, 682, 848
NcoI	CCATGG	1 cut(s)	852
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	4 cut(s)	303, 564, 720, 792
NlaIII	CATG	3 cut(s)	502, 793, 856
NmuCI	GTSAC	1 cut(s)	538
PdmI	GAANNNNTTC	3 cut(s)	123, 338, 801
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	245, 396, 675, 765
PleI	GAGTC	2 cut(s)	250, 361
PmaCI	CACGTG	1 cut(s)	543
PmlI	CACGTG	1 cut(s)	543
PpsI	GAGTC	2 cut(s)	250, 361
Ppu21I	YACGTR	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	299, 729
PspCI	CACGTG	1 cut(s)	543
PspGI	CCWGG	2 cut(s)	299, 729
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	399, 880
SatI	GCNGC	4 cut(s)	244, 395, 674, 764
Sau3AI	GATC	4 cut(s)	303, 564, 720, 792
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	2 cut(s)	250, 361
ScrFI	CCNGG	2 cut(s)	301, 731
SduI	GDGCHC	1 cut(s)	740
SetI	ASST	6 cut(s)	339, 388, 454, 535, 545, 586
SfaNI	GCATC	3 cut(s)	199, 348, 853
SfcI	CTRYAG	1 cut(s)	761
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	154, 398
SmoI	CTYRAG	2 cut(s)	154, 398
Sse9I	AATT	1 cut(s)	689
SsiI	CCGC	2 cut(s)	394, 800
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	299, 729
StyI	CCWWGG	2 cut(s)	843, 852
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	795
TasI	AATT	1 cut(s)	689
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	399, 880
Tru9I	TTAA	2 cut(s)	399, 880
TscAI	CASTG	2 cut(s)	84, 759
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	243, 673, 763
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	487
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	2 cut(s)	84, 759
Tth111I	GACNNNGTC	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	2 cut(s)	661, 850
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	3 cut(s)	123, 338, 801
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.