AT5G52300

Low-temperature-induced 65 kDa protein-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
21237021 .. 21239531
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52300.2

Sequence Viewer

Length: 1860 bp
ATGGAGTCACAGTTGACACGTCCTTATGGTCATGAGCAAGCAGAAGAACCAATCAGAATTCACCATCCAGAAGAAGAAGAGCATCATGAGAAGGGAGCATCCAAAGTGTTGAAGAAAGTAAAAGAAAAGGCTAAGAAAATCAAGAACAGTCTCACTAAACATGGAAATGGTCATGATCACGATGTGGAAGATGATGATGATGAGTATGACGAGCAAGACCCAGAAGTTCACGGCGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAGTCTCTTAGTCATGCCGGAGAAACTAATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCAAACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGGCACTGGCTGATCCTGTAAGAACGACGGAAACATCGGACTGGGAAGCGAAAAGAGAGGCACCGACTCATTATCCTCTCGGAGTGTCAGAATTTTCAGACAGAGGAGAGAGCAGAGAGGCTCATCAAGAGCCATTGAACACTCCTGTGTCTCTGCTTTCAGCAACAGAGGACGTGACTAGGACGTTTGCTCCTGGTGGTGAAGATGACTATCTCGGTGGTCAACGGAAAGTCAACGTCGAGACGCCAAAACGTTTGGAGGAAGATCCGGCTGCTCCAGGAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCACGCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGAATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACTTTCCGACGAGAAGCCATGAGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTCCGGCAAGATTTGGAGGGGAATCAAAAGCTGGGATGGAGGAAGATTTTCCGACAAGAGGTGATGTGAAAGTAGAGAGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAGTTCTCACCAGAACTATCTCGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAGTCGACACATGAGACAAAACCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACTAACAAAGCTATAGCCGCAAAGAACGTCGTTGCCTCAAAGCTAGGTTACACCGGAGAGAATGGCGGCGGGCAAAGCGAGAGCCCTGTAAAAGATGAAACTCCGAGATCTGTTACTGCTTACGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTTTACGAAAAAGTCAAAGAAACAGGATCAACGGTGATGACAAAGCTACCTCTCTCCGGAGGTGGAAGTGGAGTGAAGGAGACGCAACAAGGGGAAGAGAAAGGTGTGACGGCTAAAAATTATATATCAGAGAAGCTGAAACCTGGAGAAGAGGACAAAGCTTTATCGGAAATGATAGCTGAGAAACTTCATTTTGGAGGAGGAGGAGAGAAGAAGACAACGGCTACAAAGGAGGTGGAAGTGACGGTTGAGAAGATACCTTCCGACCAGATAGCGGAGGGGAAAGGACATGGTGAGGCGGTTGCAGAGGAAGGAAAAGGTGGAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTCGGTGGTAAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACCGTTGGGACTATGGGGTTTTCGGATTCCGGTGGAAGTGAGTTGGGAGGCAGTGGCGGAGGTAAGGGAGTTCAAGATTCTGGGAACTGA

Protein Analysis

619

Amino Acids

65.97

Weight (kDa)

5.07

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTI65_LTI78_N PF23403 26 - 87 1.1e-18 LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV PF23402 219 - 279 5.4e-22 LTI65/LTI78 NYQTKV repeat
CAP160 PF07918 387 - 411 3.5e-13 CAP160 repeat
LTI65_PGEED PF23399 481 - 510 1.4e-13 LTI65/LTI78 PGEED repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 838
AccB1I GGYRCC 2 cut(s) 490, 1766
AccBSI CCGCTC 1 cut(s) 1697
AccI GTMKAC 1 cut(s) 1118
AccII CGCG 1 cut(s) 870
AccIII TCCGGA 1 cut(s) 1400
AciI CCGC 8 cut(s) 1197, 1245, 1248, 1316, 1619, 1643, 1697, 1827
AclI AACGTT 1 cut(s) 682
AclWI GGATC 5 cut(s) 437, 689, 724, 758, 1378
AcsI RAATTY 3 cut(s) 57, 521, 934
AcuI CTGAAG 2 cut(s) 929, 1146
AcyI GRCGYC 1 cut(s) 674
AdeI CACNNNGTG 1 cut(s) 184
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 5 cut(s) 713, 995, 1400, 1618, 1776
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 4 cut(s) 112, 568, 1745, 1844
AjiI CACGTC 2 cut(s) 20, 604
AjnI CCWGG 4 cut(s) 343, 622, 706, 1486
AleI CACNNNNGTG 1 cut(s) 575
AlwI GGATC 5 cut(s) 437, 689, 724, 758, 1378
Aor13HI TCCGGA 1 cut(s) 1400
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 3 cut(s) 57, 521, 934
Asp700I GAANNNNTTC 2 cut(s) 879, 984
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 1737
AsuHPI GGTGA 6 cut(s) 53, 641, 1010, 1053, 1390, 1649
AvaII GGWCC 1 cut(s) 1737
BanI GGYRCC 2 cut(s) 490, 1766
BanII GRGCYC 1 cut(s) 1265
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
BbsI GAAGAC 3 cut(s) 363, 882, 1565
BbvI GCAGC 1 cut(s) 688
BccI CCATC 2 cut(s) 72, 967
BceAI ACGGC 4 cut(s) 242, 247, 1470, 1581
BciT130I CCWGG 4 cut(s) 345, 624, 708, 1488
BclI TGATCA 3 cut(s) 175, 847, 1051
BfaI CTAG 2 cut(s) 609, 1223
BfmI CTRYAG 1 cut(s) 1191
BglII AGATCT 1 cut(s) 1286
BisI GCNGC 3 cut(s) 702, 1197, 1246
BlsI GCNGC 3 cut(s) 703, 1198, 1247
Bme1390I CCNGG 4 cut(s) 345, 624, 708, 1488
Bme18I GGWCC 1 cut(s) 1737
BmgBI CACGTC 2 cut(s) 20, 604
BmgT120I GGNCC 1 cut(s) 1737
BmiI GGNNCC 2 cut(s) 492, 1768
BmrFI CCNGG 4 cut(s) 345, 624, 708, 1488
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 91, 107, 332
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 3 cut(s) 363, 882, 1565
BpmI CTGGAG 4 cut(s) 327, 690, 810, 1509
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 344, 1733
BsaWI WCCGGW 4 cut(s) 1232, 1342, 1400, 1799
BsaXI ACNNNNNCTCC 3 cut(s) 26, 604, 634
Bsc4I CCNNNNNNNGG 5 cut(s) 713, 995, 1400, 1618, 1776
Bse1I ACTGG 3 cut(s) 239, 441, 476
Bse8I GATNNNNATC 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 1400
BseBI CCWGG 4 cut(s) 345, 624, 708, 1488
BseDI CCNNGG 2 cut(s) 344, 1733
BseGI GGATG 3 cut(s) 64, 98, 978
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 5 cut(s) 713, 995, 1400, 1618, 1776
BseMII CTCAG 5 cut(s) 742, 798, 1089, 1320, 1515
BseNI ACTGG 3 cut(s) 239, 441, 476
BseRI GAGGAG 6 cut(s) 344, 549, 726, 1557, 1560, 1563
BseXI GCAGC 1 cut(s) 688
BseYI CCCAGC 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 870
BshNI GGYRCC 2 cut(s) 490, 1766
BsiSI CCGG 8 cut(s) 303, 320, 698, 941, 1233, 1343, 1401, 1800
BslFI GGGAC 3 cut(s) 361, 1062, 1792
BslI CCNNNNNNNGG 5 cut(s) 713, 995, 1400, 1618, 1776
BsmBI CGTCTC 2 cut(s) 665, 1418
BsmFI GGGAC 3 cut(s) 361, 1062, 1792
Bsp1286I GDGCHC 1 cut(s) 1265
Bsp13I TCCGGA 1 cut(s) 1400
BspACI CCGC 8 cut(s) 1197, 1245, 1248, 1316, 1619, 1643, 1697, 1827
BspCNI CTCAG 5 cut(s) 741, 799, 1090, 1321, 1516
BspEI TCCGGA 1 cut(s) 1400
BspFNI CGCG 1 cut(s) 870
BspHI TCATGA 4 cut(s) 31, 85, 172, 1048
BspLI GGNNCC 2 cut(s) 492, 1768
BspPI GGATC 5 cut(s) 437, 689, 724, 758, 1378
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 490, 1766
BsrBI CCGCTC 1 cut(s) 1697
BsrI ACTGG 3 cut(s) 239, 441, 476
BssECI CCNNGG 2 cut(s) 344, 1733
BssNI GRCGYC 1 cut(s) 674
Bst2UI CCWGG 4 cut(s) 345, 624, 708, 1488
Bst4CI ACNGT 7 cut(s) 12, 149, 1324, 1378, 1591, 1737, 1774
Bst6I CTCTTC 5 cut(s) 72, 1021, 1434, 1488, 1740
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 39, 1250
BstDEI CTNAG 8 cut(s) 132, 285, 293, 728, 807, 1098, 1329, 1524
BstDSI CCRYGG 1 cut(s) 1733
BstF5I GGATG 3 cut(s) 64, 98, 978
BstFNI CGCG 1 cut(s) 870
BstHHI GCGC 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 1172, 1196, 1254
BstNI CCWGG 4 cut(s) 345, 624, 708, 1488
BstSCI CCNGG 4 cut(s) 343, 622, 706, 1486
BstSFI CTRYAG 1 cut(s) 1191
BstUI CGCG 1 cut(s) 870
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 3 cut(s) 363, 882, 1565
BstX2I RGATCY 2 cut(s) 694, 1286
BstYI RGATCY 2 cut(s) 694, 1286
BtgI CCRYGG 1 cut(s) 1733
BtrI CACGTC 2 cut(s) 20, 604
BtsCI GGATG 3 cut(s) 64, 98, 978
BtsI GCAGTG 1 cut(s) 1828
BtsIMutI CAGTG 4 cut(s) 246, 434, 736, 1828
Cac8I GCNNGC 2 cut(s) 39, 1250
CciI TCATGA 4 cut(s) 31, 85, 172, 1048
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 1737
CpoI CGGWCCG 1 cut(s) 1737
CseI GACGC 3 cut(s) 682, 876, 1435
Csp6I GTAC 1 cut(s) 794
CspCI CAANNNNNGTGG 2 cut(s) 1560, 1595
CspI CGGWCCG 1 cut(s) 1737
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 8 cut(s) 132, 285, 293, 728, 807, 1098, 1329, 1524
DraIII CACNNNGTG 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 838
DseDI GACNNNNNNGTC 1 cut(s) 838
Eam1104I CTCTTC 5 cut(s) 72, 1021, 1434, 1488, 1740
EarI CTCTTC 5 cut(s) 72, 1021, 1434, 1488, 1740
EciI GGCGGA 1 cut(s) 1842
Eco24I GRGCYC 1 cut(s) 1265
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 1737
Eco57I CTGAAG 2 cut(s) 929, 1146
EcoRI GAATTC 2 cut(s) 57, 934
EcoRII CCWGG 4 cut(s) 343, 622, 706, 1486
EcoRV GATATC 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 1265
Esp3I CGTCTC 2 cut(s) 665, 1418
FaqI GGGAC 3 cut(s) 361, 1062, 1792
FauI CCCGC 2 cut(s) 1241, 1309
FbaI TGATCA 3 cut(s) 175, 847, 1051
FblI GTMKAC 1 cut(s) 1118
Fnu4HI GCNGC 3 cut(s) 702, 1197, 1246
FokI GGATG 3 cut(s) 51, 85, 985
FriOI GRGCYC 1 cut(s) 1265
Fsp4HI GCNGC 3 cut(s) 702, 1197, 1246
FspBI CTAG 2 cut(s) 609, 1223
GlaI GCGC 1 cut(s) 235
GluI GCNGC 3 cut(s) 702, 1197, 1246
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 4 cut(s) 327, 690, 810, 1509
HapII CCGG 8 cut(s) 303, 320, 698, 941, 1233, 1343, 1401, 1800
HgaI GACGC 3 cut(s) 682, 876, 1435
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 674
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 5 cut(s) 15, 653, 664, 1119, 1338
HindII GTYRAC 5 cut(s) 15, 653, 664, 1119, 1338
HindIII AAGCTT 1 cut(s) 1503
HpaII CCGG 8 cut(s) 303, 320, 698, 941, 1233, 1343, 1401, 1800
HphI GGTGA 6 cut(s) 53, 641, 1010, 1053, 1390, 1649
Hpy166II GTNNAC 9 cut(s) 15, 229, 281, 653, 664, 1119, 1338, 1348, 1721
Hpy8I GTNNAC 9 cut(s) 15, 229, 281, 653, 664, 1119, 1338, 1348, 1721
Hpy99I CGWCG 5 cut(s) 460, 671, 889, 1042, 1211
HpyAV CCTTC 6 cut(s) 85, 907, 1414, 1614, 1649, 1664
HpyCH4III ACNGT 7 cut(s) 12, 149, 1324, 1378, 1591, 1737, 1774
HpyCH4IV ACGT 6 cut(s) 19, 603, 614, 666, 682, 1206
HpyCH4V TGCA 1 cut(s) 1649
HpyF10VI GCNNNNNNNGC 3 cut(s) 1172, 1196, 1254
HpyF3I CTNAG 8 cut(s) 132, 285, 293, 728, 807, 1098, 1329, 1524
HpySE526I ACGT 6 cut(s) 19, 603, 614, 666, 682, 1206
Hsp92I GRCGYC 1 cut(s) 674
HspAI GCGC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 1400
Ksp22I TGATCA 3 cut(s) 175, 847, 1051
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 4 cut(s) 95, 625, 709, 1694
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 3 cut(s) 91, 107, 332
MaeI CTAG 2 cut(s) 609, 1223
MaeII ACGT 6 cut(s) 19, 603, 614, 666, 682, 1206
MbiI CCGCTC 1 cut(s) 1697
MflI RGATCY 2 cut(s) 694, 1286
MhlI GDGCHC 1 cut(s) 1265
MluCI AATT 5 cut(s) 57, 521, 742, 934, 1462
MlyI GAGTC 7 cut(s) 14, 490, 818, 848, 1124, 1333, 1757
MmeI TCCRAC 3 cut(s) 908, 1013, 1632
MroI TCCGGA 1 cut(s) 1400
MroXI GAANNNNTTC 2 cut(s) 879, 984
MseI TTAA 1 cut(s) 1689
MslI CAYNNNNRTG 3 cut(s) 165, 575, 777
MspI CCGG 8 cut(s) 303, 320, 698, 941, 1233, 1343, 1401, 1800
MspR9I CCNGG 4 cut(s) 345, 624, 708, 1488
MvaI CCWGG 4 cut(s) 345, 624, 708, 1488
MvnI CGCG 1 cut(s) 870
MwoI GCNNNNNNNGC 3 cut(s) 1172, 1196, 1254
NlaIV GGNNCC 2 cut(s) 492, 1768
NmuCI GTSAC 6 cut(s) 6, 604, 829, 1450, 1585, 1699
OliI CACNNNNGTG 1 cut(s) 575
PagI TCATGA 4 cut(s) 31, 85, 172, 1048
PciSI GCTCTTC 1 cut(s) 72
PdmI GAANNNNTTC 2 cut(s) 879, 984
PfeI GAWTC 6 cut(s) 248, 917, 959, 1094, 1796, 1847
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 3 cut(s) 703, 1198, 1247
PleI GAGTC 7 cut(s) 13, 490, 817, 847, 1123, 1333, 1756
PpsI GAGTC 7 cut(s) 13, 490, 817, 847, 1123, 1333, 1756
Psp1406I AACGTT 1 cut(s) 682
Psp6I CCWGG 4 cut(s) 343, 622, 706, 1486
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 4 cut(s) 343, 622, 706, 1486
PspN4I GGNNCC 2 cut(s) 492, 1768
PspPI GGNCC 1 cut(s) 1737
PsuI RGATCY 2 cut(s) 694, 1286
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 3 cut(s) 165, 575, 777
Rsr2I CGGWCCG 1 cut(s) 1737
RsrII CGGWCCG 1 cut(s) 1737
SalI GTCGAC 1 cut(s) 1117
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 1689
SatI GCNGC 3 cut(s) 702, 1197, 1246
Sau96I GGNCC 1 cut(s) 1737
SchI GAGTC 7 cut(s) 14, 490, 818, 848, 1124, 1333, 1757
ScrFI CCNGG 4 cut(s) 345, 624, 708, 1488
SduI GDGCHC 1 cut(s) 1265
SfaNI GCATC 3 cut(s) 91, 107, 332
SfcI CTRYAG 1 cut(s) 1191
SinI GGWCC 1 cut(s) 1737
SmiMI CAYNNNNRTG 3 cut(s) 165, 575, 777
Sse9I AATT 5 cut(s) 57, 521, 742, 934, 1462
SsiI CCGC 8 cut(s) 1197, 1245, 1248, 1316, 1619, 1643, 1697, 1827
SspMI CTAG 2 cut(s) 609, 1223
StyD4I CCNGG 4 cut(s) 343, 622, 706, 1486
TaaI ACNGT 7 cut(s) 12, 149, 1324, 1378, 1591, 1737, 1774
TaiI ACGT 6 cut(s) 22, 606, 617, 669, 685, 1209
TaqI TCGA 2 cut(s) 669, 1118
TasI AATT 5 cut(s) 57, 521, 742, 934, 1462
TauI GCSGC 2 cut(s) 1199, 1248
TfiI GAWTC 6 cut(s) 248, 917, 959, 1094, 1796, 1847
Tru1I TTAA 1 cut(s) 1689
Tru9I TTAA 1 cut(s) 1689
TscAI CASTG 4 cut(s) 246, 441, 736, 1828
TseFI GTSAC 6 cut(s) 6, 604, 829, 1450, 1585, 1699
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 6 cut(s) 6, 604, 829, 1450, 1585, 1699
TspDTI ATGAA 4 cut(s) 261, 839, 1290, 1523
TspGWI ACGGA 4 cut(s) 438, 473, 670, 1729
TspRI CASTG 4 cut(s) 246, 441, 736, 1828
VpaK11BI GGWCC 1 cut(s) 1737
XapI RAATTY 3 cut(s) 57, 521, 934
XmiI GTMKAC 1 cut(s) 1118
XmnI GAANNNNTTC 2 cut(s) 879, 984
XspI CTAG 2 cut(s) 609, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.