Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022060.1

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 967

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 805 bp

atgtccgacatatccacaactccaagtctccaactcaccccgaataagacgtcgcttaagacctgggcaatcagtaacggcaagtcggcaacttactgtctgattatccattgcaggagaaacgattccacgtcgcctttaagccacctggcggaaaatgagacgtggttggtttatttcgttactcgtgtcgttcacatagagcccgacacatgcagaggaggcacaaccttttgctcccgccattcctttaaagcttccccttcccctcctctgtttctcacactcttgtttctttcaacacaaaaaaagttctttgttttaatcaatcagaaatatcgcaaagtttggatcatggatactcatgcagtacattctcgtgttgaaggtgaggaggaggagcaccatgagaagacgtcggttttgaagaaggtgaaggcgaaagcgaggaagttgagggatactatcacagggcagggcaatcaaggccatgaacccgaaggccatcagactcctgataatgatcaagatctggatgaggaggatgacgaagatgtagacgacccagatgtccatggtgcaccaaaatatgactcggcagttaagaaaactgatgctcctctgcaaggcgacattttgaaggtgcctgtggggaatttcggagacactagagcggggcatgatgagcatgaacctgtagttccaagggagaattctaatgtcagtgtcagtgatccattgagatctaatgtgcctgagctacatggaactacagaccacggtgcaagtaggttgcttcaactcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

268

Amino Acids

29.94

Weight (kDa)

5.9

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AatII	GACGTC	2 cut(s)	53, 419
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	3 cut(s)	152, 241, 674
AclWI	GGATC	2 cut(s)	359, 728
AcsI	RAATTY	2 cut(s)	655, 712
AcyI	GRCGYC	2 cut(s)	50, 416
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	151, 626
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	300, 386, 427, 640, 800
AjiI	CACGTC	2 cut(s)	132, 165
AjnI	CCWGG	2 cut(s)	62, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	2 cut(s)	257, 760
AluI	AGCT	2 cut(s)	257, 760
Alw21I	GWGCWC	2 cut(s)	405, 583
Alw26I	GTCTC	3 cut(s)	32, 155, 657
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	359, 728
AoxI	GGCC	2 cut(s)	487, 502
ApaLI	GTGCAC	1 cut(s)	579
ApoI	RAATTY	2 cut(s)	655, 712
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 406, 438
Asp700I	GAANNNNTTC	1 cut(s)	124
AsuHPI	GGTGA	3 cut(s)	28, 401, 445
BaeGI	GKGCMC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	2 cut(s)	186, 378
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	2 cut(s)	405, 583
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	64, 149
BciVI	GTATCC	2 cut(s)	352, 454
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	32, 155, 657
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	2 cut(s)	696, 771
BfrI	CTTAAG	1 cut(s)	56
BfuI	GTATCC	2 cut(s)	352, 454
BglII	AGATCT	2 cut(s)	529, 743
Bme1390I	CCNGG	2 cut(s)	64, 149
BmgBI	CACGTC	2 cut(s)	132, 165
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	2 cut(s)	64, 149
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	756
BsaBI	GATNNNNATC	2 cut(s)	522, 528
BsaHI	GRCGYC	2 cut(s)	50, 416
BsaJI	CCNNGG	4 cut(s)	63, 574, 704, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 626
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	2 cut(s)	522, 528
BseBI	CCWGG	2 cut(s)	64, 149
BseDI	CCNNGG	4 cut(s)	63, 574, 704, 778
BseGI	GGATG	2 cut(s)	541, 550
BseJI	GATNNNNATC	2 cut(s)	522, 528
BseLI	CCNNNNNNNGG	2 cut(s)	151, 626
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	747
BseRI	GAGGAG	7 cut(s)	234, 261, 407, 410, 413, 554, 609
BseSI	GKGCMC	1 cut(s)	583
BshFI	GGCC	2 cut(s)	489, 504
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	2 cut(s)	405, 583
BslI	CCNNNNNNNGG	2 cut(s)	151, 626
BsmAI	GTCTC	3 cut(s)	32, 155, 657
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	489, 504
Bsp1286I	GDGCHC	3 cut(s)	207, 405, 583
Bsp143I	GATC	5 cut(s)	351, 523, 529, 733, 743
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	3 cut(s)	152, 241, 674
BspANI	GGCC	2 cut(s)	489, 504
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	645
BspPI	GGATC	2 cut(s)	359, 728
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	4 cut(s)	63, 574, 704, 778
BssMI	GATC	5 cut(s)	351, 523, 529, 733, 743
BssNI	GRCGYC	2 cut(s)	50, 416
BssSI	CACGAG	2 cut(s)	186, 378
BssT1I	CCWWGG	2 cut(s)	574, 704
Bst2BI	CACGAG	2 cut(s)	186, 378
Bst2UI	CCWGG	2 cut(s)	64, 149
Bst4CI	ACNGT	2 cut(s)	98, 782
BstACI	GRCGYC	2 cut(s)	50, 416
BstAFI	CTTAAG	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	2 cut(s)	574, 778
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	541, 550
BstKTI	GATC	5 cut(s)	354, 526, 532, 736, 746
BstMAI	GTCTC	3 cut(s)	32, 155, 657
BstMBI	GATC	5 cut(s)	351, 523, 529, 733, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 486, 685
BstNI	CCWGG	2 cut(s)	64, 149
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	62, 147
BstSFI	CTRYAG	2 cut(s)	696, 771
BstSLI	GKGCMC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	2 cut(s)	529, 743
BstYI	RGATCY	2 cut(s)	529, 743
BsuI	GTATCC	2 cut(s)	352, 454
BsuRI	GGCC	2 cut(s)	489, 504
BtgI	CCRYGG	2 cut(s)	574, 778
BtrI	CACGTC	2 cut(s)	132, 165
BtsCI	GGATG	2 cut(s)	541, 550
BtsIMutI	CAGTG	2 cut(s)	730, 736
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	9 cut(s)	213, 355, 365, 407, 491, 575, 680, 689, 764
CviJI	RGCY	6 cut(s)	144, 205, 257, 489, 504, 760
CviKI_1	RGCY	6 cut(s)	144, 205, 257, 489, 504, 760
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	5 cut(s)	353, 525, 531, 735, 745
DpnII	GATC	5 cut(s)	351, 523, 529, 733, 743
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	574, 704
Eco24I	GRGCYC	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	62, 147
EcoT14I	CCWWGG	2 cut(s)	574, 704
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	574, 704
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	9 cut(s)	216, 358, 368, 410, 494, 578, 683, 692, 767
FatI	CATG	9 cut(s)	212, 354, 364, 406, 490, 574, 679, 688, 763
FauI	CCCGC	2 cut(s)	248, 667
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	558
FokI	GGATG	2 cut(s)	548, 557
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	489, 504
Hin1I	GRCGYC	2 cut(s)	50, 416
Hin1II	CATG	9 cut(s)	216, 358, 368, 410, 494, 578, 683, 692, 767
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	3 cut(s)	125, 511, 593
HphI	GGTGA	3 cut(s)	28, 401, 445
Hpy166II	GTNNAC	3 cut(s)	196, 559, 581
Hpy188I	TCNGA	5 cut(s)	7, 102, 333, 510, 662
Hpy188III	TCNNGA	3 cut(s)	515, 527, 533
Hpy8I	GTNNAC	3 cut(s)	196, 559, 581
Hpy99I	CGWCG	3 cut(s)	55, 136, 421
HpyAV	CCTTC	6 cut(s)	273, 380, 424, 430, 494, 634
HpyCH4III	ACNGT	2 cut(s)	98, 782
HpyCH4IV	ACGT	4 cut(s)	50, 131, 164, 416
HpyCH4V	TGCA	6 cut(s)	114, 216, 368, 581, 625, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 486, 685
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	4 cut(s)	50, 131, 164, 416
Hsp92I	GRCGYC	2 cut(s)	50, 416
Hsp92II	CATG	9 cut(s)	216, 358, 368, 410, 494, 578, 683, 692, 767
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	351, 523, 529, 733, 743
LmnI	GCTCC	3 cut(s)	242, 400, 622
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	4 cut(s)	50, 131, 164, 416
MaeIII	GTNAC	2 cut(s)	74, 181
MalI	GATC	5 cut(s)	353, 525, 531, 735, 745
MbiI	CCGCTC	1 cut(s)	674
MboI	GATC	5 cut(s)	351, 523, 529, 733, 743
MboII	GAAGA	3 cut(s)	424, 439, 563
MflI	RGATCY	2 cut(s)	529, 743
MhlI	GDGCHC	3 cut(s)	207, 405, 583
MluCI	AATT	2 cut(s)	655, 712
MlyI	GAGTC	2 cut(s)	505, 587
MmeI	TCCRAC	2 cut(s)	30, 55
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	5 cut(s)	57, 140, 252, 323, 603
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	64, 149
MvaI	CCWGG	2 cut(s)	64, 149
MwoI	GCNNNNNNNGC	3 cut(s)	222, 486, 685
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	5 cut(s)	351, 523, 529, 733, 743
NlaIII	CATG	9 cut(s)	216, 358, 368, 410, 494, 578, 683, 692, 767
NlaIV	GGNNCC	1 cut(s)	645
NmeAIII	GCCGAG	1 cut(s)	575
NspI	RCATGY	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	125
PleI	GAGTC	2 cut(s)	505, 587
PpsI	GAGTC	2 cut(s)	505, 587
Psp6I	CCWGG	2 cut(s)	62, 147
PspGI	CCWGG	2 cut(s)	62, 147
PspN4I	GGNNCC	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	529, 743
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	57, 140, 252, 323, 603
Sau3AI	GATC	5 cut(s)	351, 523, 529, 733, 743
SchI	GAGTC	2 cut(s)	505, 587
ScrFI	CCNGG	2 cut(s)	64, 149
SduI	GDGCHC	3 cut(s)	207, 405, 583
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	2 cut(s)	696, 771
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	655, 712
SsiI	CCGC	3 cut(s)	152, 241, 674
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	62, 147
StyI	CCWWGG	2 cut(s)	574, 704
TaaI	ACNGT	2 cut(s)	98, 782
TaiI	ACGT	4 cut(s)	53, 134, 167, 419
TasI	AATT	2 cut(s)	655, 712
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	5 cut(s)	57, 140, 252, 323, 603
Tru9I	TTAA	5 cut(s)	57, 140, 252, 323, 603
TscAI	CASTG	2 cut(s)	730, 736
TspDTI	ATGAA	2 cut(s)	507, 705
TspRI	CASTG	2 cut(s)	730, 736
Vha464I	CTTAAG	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	2 cut(s)	655, 712
XceI	RCATGY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	669
ZraI	GACGTC	2 cut(s)	51, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.