Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3634697 .. 3637430

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGATACTCATGTAGTACATTCTCGTGTTGAAGGTGAGGATGAGGAGCACCATGAGAAGACGTCGGTTTTGAAGAAGGTGAAGGCGAAAGCGAGGAAGTTGAAGGAGACCATCACAGGGCATGGCCATCACGGCCATGAACACGAAGGCCATCATACTCCTGATGATCATGATCTGGATGAGGAAGATGACGAAGAGGTAGACGACCCAGAAGTTCATGGTGCACCCATATATGACTCGGCAGTTAGGAGGACTGACGCTCCTACGCAAGGAGACATTTTGAAAGTGCCTATGGTGAATTTTGGAGACACTAGAGCGGGGCATGATGAATATGATCCTGTAGTTCCAAGGGAGAGGTTTAATGTCAATGTCAGTGATCCAATGAGGTCTAATGTGCCTGGGCTACATGGAACCACAGGCCAGGGTTTAACGACTAGGAGGACTGATGCTCCTGTGCAAGGAGGCATTCATTTTGGAGACACACACCATGAATATGATCCTATAGTGCCAAGAGAGAGGACTAATGTGGGATTTAGTGGACCGGTGAGGGATTTTGTGCCTGGGCAAAATCGAACTACAACACGGCATGAGGATCTTTTGGGAGGAGCAAGGACCAAACTGGCTGGTCCAACAACTGGACCTGCCCTTAAGCATGAAGAGCCAAAGGGATTCGTTGATGTAATTGGGTGTGGTCCTCATGCGCCGCACAACACCCCTGTTTCTCCTCTTCCTCATCATGGAAATTACAACACTATTACCATGGATGTTGACCCAGGTAAGACTTTTGGCTCCTGGCAAGGAGGGCATTTGGGTCAAACCAGGGTCAAATTGGGGGAGACTGGTGTATTAGGGGAAGGAACTCCTGTGCCAGAGAGTACCCCTGTTTCTTCTCTTGCTCATGAAACTCACAGAAGTACGATGGACGTCGACCCAAGGCAGACATTTGTATCCGGGCAGGGAGGGGGAGGGGAGTTAGGTCAGCCCAGGGTCAATCTGGACCGACCTAGAGGACTGGAGGAAGATCCTCATGCGCCTAAGGCCAATCCTCAAGCTTACACTCCTTCAAATTATGAGACCAAAGTCACTGATCCCACCAAATCTGGTGGTCAGGAAATTGGAGTCACACCAATACTTCATTCCTTCGATAAGATGAACCTTCACGGTGATGATCGCCAATACTTGAAAAATGGTGCCAAACACACCATTGCCGACAAGGCAATTTCGGCAAAGAATGTAGTTGCTTCCAAGTTGGGATATGGCGGGAATGAGCCTGATCATGATCATGTCTACTCGAGAGGCTATGTTACTGGTGCTGGGAAATCTGGTTCATCACCTCGGAACAAAGTACTTGATCCCTCTACTAACCAATTCAGACCAGCAGAGACTCCACAAGTCCGAGGAACCATCAAACCGGAATATGATACCACTACTGATCAGAAGCCGGTCCAGACAGGTGGAAGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGACGATATCCGCAAAGAAGGTTGTTGCTTCCAAGCTGGGATATGGGGCAAGTGATCAGGTGCATGACACGGAAGATGTTACTTGCACTAATGTGCGCTCTGGGACAACAGCAGCGGATCAACATGGCAAGACGATAAGCTCTACAGTTGCGGAGAAGCTAACACCTTTGTATGAGAAGGTTGCCGGGGCAGGGACTGCTGTGATGTCCAAGATTCAAGGCGGGAGTACTGTTAGTACTGACCGAGATACTAGTACTGGCGTTGTTAATCAAGCTGGACAGGACAAAGGGGTGTCTGTGAAGGACTATTTCGTGGAGAAGCTGAGGCCCGGAGAGGAGGACAGAGCACTTTCTGAGGTCATAACTGAGACATTACACAAGCATAAGCCGGGTGTTAAACAAGAGACAGGGTACTTTGCTAGTGCTAGGCCCAAGGGGAAGGTGACGGAGTCGGTGGAGGTGAGGCAGCGTTTGGGGGATACCGAGGGGAATGAGAATTTTGTGGTGGATAAGATTAAGGACTCTGTTGGTTCGATGCTTGGTGGTACTGAAAAGAGTGATGAAGAACGTCGGCAAGGTCTCTCTAGCTCTGCTGGTACCGGGGAGGAAGATCGGCGCAGTGTTTGTGTGGTGGAGCATGGGAGGCTACAGGAATCCGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

722

Amino Acids

77.67

Weight (kDa)

5.95

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	16 - 82	3.7e-27	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	329 - 388	2.9e-32	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	402 - 421	3.5e-11	CAP160 repeat
CAP160	PF07918	492 - 517	4.2e-10	CAP160 repeat
LTI65_PGEED	PF23399	596 - 626	3.3e-19	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	65, 927
Acc36I	ACCTGC	1 cut(s)	649
Acc65I	GGTACC	1 cut(s)	2099
AccB1I	GGYRCC	2 cut(s)	1190, 2099
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	317
AccI	GTMKAC	3 cut(s)	201, 927, 1287
AciI	CCGC	7 cut(s)	317, 704, 1260, 1515, 1619, 1655, 1725
AclWI	GGATC	9 cut(s)	329, 371, 491, 600, 1016, 1082, 1346, 1495, 1629
AcoI	YGGCCR	2 cut(s)	124, 133
AcsI	RAATTY	2 cut(s)	298, 1999
AcyI	GRCGYC	2 cut(s)	62, 924
AfiI	CCNNNNNNNGG	6 cut(s)	117, 269, 458, 635, 737, 1695
AflII	CTTAAG	1 cut(s)	647
AgeI	ACCGGT	1 cut(s)	541
AgsI	TTSAA	7 cut(s)	32, 73, 103, 283, 1065, 1183, 1721
AhlI	ACTAGT	1 cut(s)	1754
AjnI	CCWGG	7 cut(s)	397, 420, 559, 772, 791, 818, 983
AjuI	GAANNNNNNNTTGG	2 cut(s)	1120, 1152
AleI	CACNNNNGTG	1 cut(s)	1595
AloI	GAACNNNNNNTCC	2 cut(s)	1309, 1341
AluBI	AGCT	8 cut(s)	1052, 1461, 1540, 1644, 1663, 1778, 1825, 2091
AluI	AGCT	8 cut(s)	1052, 1461, 1540, 1644, 1663, 1778, 1825, 2091
Alw21I	GWGCWC	3 cut(s)	51, 226, 1852
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	9 cut(s)	329, 371, 491, 600, 1016, 1082, 1346, 1495, 1629
AlwNI	CAGNNNCTG	1 cut(s)	1700
Ama87I	CYCGRG	1 cut(s)	1291
AoxI	GGCC	7 cut(s)	124, 133, 148, 418, 1038, 1829, 1931
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	1616, 1969
ApoI	RAATTY	2 cut(s)	298, 1999
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AsiGI	ACCGGT	1 cut(s)	541
Asp718I	GGTACC	1 cut(s)	2099
AspLEI	GCGC	4 cut(s)	703, 1033, 1602, 2121
AspS9I	GGNCC	9 cut(s)	539, 612, 626, 638, 692, 997, 1444, 1830, 1932
AsuC2I	CCSGG	5 cut(s)	952, 1690, 1833, 1893, 2104
AsuHPI	GGTGA	8 cut(s)	47, 91, 307, 556, 1175, 1323, 1957, 1975
AvaI	CYCGRG	1 cut(s)	1291
AvaII	GGWCC	7 cut(s)	539, 612, 626, 638, 692, 997, 1444
AxyI	CCTNAGG	1 cut(s)	1035
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	3 cut(s)	30, 930, 963
BalI	TGGCCA	1 cut(s)	126
BanI	GGYRCC	2 cut(s)	1190, 2099
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	3 cut(s)	51, 226, 1852
BbvCI	CCTCAGC	1 cut(s)	1826
BbvI	GCAGC	2 cut(s)	1628, 1981
BccI	CCATC	5 cut(s)	119, 135, 159, 913, 1412
BceAI	ACGGC	2 cut(s)	148, 599
BciT130I	CCWGG	7 cut(s)	399, 422, 561, 774, 793, 820, 985
BciVI	GTATCC	2 cut(s)	958, 1975
BclI	TGATCA	5 cut(s)	166, 1273, 1279, 1432, 1558
BcnI	CCSGG	5 cut(s)	952, 1690, 1833, 1893, 2104
BcuI	ACTAGT	1 cut(s)	1754
BfaI	CTAG	7 cut(s)	312, 435, 1005, 1755, 1923, 1929, 2088
BfmI	CTRYAG	4 cut(s)	339, 501, 1647, 2150
BfrI	CTTAAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	649
BfuI	GTATCC	2 cut(s)	958, 1975
BglI	GCCNNNNNGGC	2 cut(s)	132, 1214
BisI	GCNGC	3 cut(s)	704, 1617, 1970
BlsI	GCNGC	3 cut(s)	705, 1618, 1971
BmcAI	AGTACT	4 cut(s)	1347, 1732, 1741, 1759
Bme18I	GGWCC	7 cut(s)	539, 612, 626, 638, 692, 997, 1444
BmeT110I	CYCGRG	1 cut(s)	1291
BmgT120I	GGNCC	9 cut(s)	539, 612, 626, 638, 692, 997, 1444, 1830, 1932
BmiI	GGNNCC	5 cut(s)	412, 790, 1192, 1402, 2101
BmsI	GCATC	2 cut(s)	436, 2028
BoxI	GACNNNNGTC	1 cut(s)	1079
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	1034
Bpu10I	CCTNAGC	1 cut(s)	1826
BpuEI	CTTGAG	1 cut(s)	1032
BpuMI	CCSGG	5 cut(s)	952, 1690, 1833, 1893, 2104
BsaBI	GATNNNNATC	2 cut(s)	171, 1278
BsaHI	GRCGYC	2 cut(s)	62, 924
BsaI	GGTCTC	3 cut(s)	101, 1067, 2087
BsaWI	WCCGGW	2 cut(s)	541, 1411
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 433, 463
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 269, 458, 635, 737, 1695
Bse118I	RCCGGY	2 cut(s)	541, 1441
Bse1I	ACTGG	6 cut(s)	624, 640, 844, 1017, 1312, 1765
Bse21I	CCTNAGG	1 cut(s)	1035
Bse3DI	GCAATG	2 cut(s)	1203, 1494
Bse8I	GATNNNNATC	2 cut(s)	171, 1278
BseBI	CCWGG	7 cut(s)	399, 422, 561, 774, 793, 820, 985
BseGI	GGATG	3 cut(s)	46, 184, 769
BseJI	GATNNNNATC	2 cut(s)	171, 1278
BseLI	CCNNNNNNNGG	6 cut(s)	117, 269, 458, 635, 737, 1695
BseMI	GCAATG	2 cut(s)	1203, 1494
BseMII	CTCAG	4 cut(s)	1458, 1817, 1848, 1860
BseNI	ACTGG	6 cut(s)	624, 640, 844, 1017, 1312, 1765
BseRI	GAGGAG	4 cut(s)	59, 618, 714, 1853
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	1628, 1981
BseYI	CCCAGC	2 cut(s)	1313, 1540
BshFI	GGCC	7 cut(s)	126, 135, 150, 420, 1040, 1831, 1933
BshNI	GGYRCC	2 cut(s)	1190, 2099
BshTI	ACCGGT	1 cut(s)	541
BsiHKAI	GWGCWC	3 cut(s)	51, 226, 1852
BsiHKCI	CYCGRG	1 cut(s)	1291
BslFI	GGGAC	2 cut(s)	1621, 1711
BslI	CCNNNNNNNGG	6 cut(s)	117, 269, 458, 635, 737, 1695
BsmFI	GGGAC	2 cut(s)	1621, 1711
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	7 cut(s)	126, 135, 150, 420, 1040, 1831, 1933
Bso31I	GGTCTC	3 cut(s)	101, 1067, 2087
BsoBI	CYCGRG	1 cut(s)	1291
Bsp1286I	GDGCHC	3 cut(s)	51, 226, 1852
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	7 cut(s)	317, 704, 1260, 1515, 1619, 1655, 1725
BspANI	GGCC	7 cut(s)	126, 135, 150, 420, 1040, 1831, 1933
BspCNI	CTCAG	4 cut(s)	1459, 1818, 1849, 1861
BspHI	TCATGA	3 cut(s)	169, 898, 1276
BspLI	GGNNCC	5 cut(s)	412, 790, 1192, 1402, 2101
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	9 cut(s)	329, 371, 491, 600, 1016, 1082, 1346, 1495, 1629
BspQI	GCTCTTC	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	1190, 2099
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	3 cut(s)	101, 1067, 2087
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	1203, 1494
BsrFI	RCCGGY	2 cut(s)	541, 1441
BsrI	ACTGG	6 cut(s)	624, 640, 844, 1017, 1312, 1765
BssAI	RCCGGY	2 cut(s)	541, 1441
BssNI	GRCGYC	2 cut(s)	62, 924
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	4 cut(s)	347, 759, 932, 1935
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	7 cut(s)	399, 422, 561, 774, 793, 820, 985
Bst4CI	ACNGT	3 cut(s)	1163, 1651, 1735
Bst6I	CTCTTC	3 cut(s)	189, 651, 732
BstACI	GRCGYC	2 cut(s)	62, 924
BstAFI	CTTAAG	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	1700
BstDEI	CTNAG	5 cut(s)	1035, 1467, 1826, 1857, 1869
BstDSI	CCRYGG	1 cut(s)	759
BstENI	CCTNNNNNAGG	2 cut(s)	267, 456
BstF5I	GGATG	3 cut(s)	46, 184, 769
BstHHI	GCGC	4 cut(s)	703, 1033, 1602, 2121
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 658, 802, 1037, 1214, 1223, 1490, 1700, 2146
BstNI	CCWGG	7 cut(s)	399, 422, 561, 774, 793, 820, 985
BstPAI	GACNNNNGTC	1 cut(s)	1079
BstSFI	CTRYAG	4 cut(s)	339, 501, 1647, 2150
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	1628, 1981
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	3 cut(s)	592, 1021, 1487
BstXI	CCANNNNNNTGG	1 cut(s)	1454
BstYI	RGATCY	3 cut(s)	592, 1021, 1487
Bsu36I	CCTNAGG	1 cut(s)	1035
BsuI	GTATCC	2 cut(s)	958, 1975
BsuRI	GGCC	7 cut(s)	126, 135, 150, 420, 1040, 1831, 1933
BtgI	CCRYGG	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	46, 184, 769
BtsI	GCAGTG	1 cut(s)	2128
BtsIMutI	CAGTG	4 cut(s)	379, 1083, 1464, 2128
BveI	ACCTGC	1 cut(s)	649
CaiI	CAGNNNCTG	1 cut(s)	1700
CciI	TCATGA	3 cut(s)	169, 898, 1276
CfoI	GCGC	4 cut(s)	703, 1033, 1602, 2121
Cfr10I	RCCGGY	2 cut(s)	541, 1441
Cfr13I	GGNCC	9 cut(s)	539, 612, 626, 638, 692, 997, 1444, 1830, 1932
CseI	GACGC	1 cut(s)	266
CspAI	ACCGGT	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	1084, 1119
DdeI	CTNAG	5 cut(s)	1035, 1467, 1826, 1857, 1869
EaeI	YGGCCR	2 cut(s)	124, 133
Eam1104I	CTCTTC	3 cut(s)	189, 651, 732
EarI	CTCTTC	3 cut(s)	189, 651, 732
Eco130I	CCWWGG	4 cut(s)	347, 759, 932, 1935
Eco31I	GGTCTC	3 cut(s)	101, 1067, 2087
Eco32I	GATATC	1 cut(s)	1512
Eco47I	GGWCC	7 cut(s)	539, 612, 626, 638, 692, 997, 1444
Eco81I	CCTNAGG	1 cut(s)	1035
Eco88I	CYCGRG	1 cut(s)	1291
EcoNI	CCTNNNNNAGG	2 cut(s)	267, 456
EcoRII	CCWGG	7 cut(s)	397, 420, 559, 772, 791, 818, 983
EcoRV	GATATC	1 cut(s)	1512
EcoT14I	CCWWGG	4 cut(s)	347, 759, 932, 1935
ErhI	CCWWGG	4 cut(s)	347, 759, 932, 1935
FaqI	GGGAC	2 cut(s)	1621, 1711
FauI	CCCGC	3 cut(s)	310, 1253, 1718
FbaI	TGATCA	5 cut(s)	166, 1273, 1279, 1432, 1558
FblI	GTMKAC	3 cut(s)	201, 927, 1287
Fnu4HI	GCNGC	3 cut(s)	704, 1617, 1970
FokI	GGATG	3 cut(s)	53, 191, 776
Fsp4HI	GCNGC	3 cut(s)	704, 1617, 1970
FspBI	CTAG	7 cut(s)	312, 435, 1005, 1755, 1923, 1929, 2088
GlaI	GCGC	4 cut(s)	702, 1032, 1601, 2120
GluI	GCNGC	3 cut(s)	704, 1617, 1970
GsaI	CCCAGC	2 cut(s)	1317, 1544
GsuI	CTGGAG	1 cut(s)	1034
HaeIII	GGCC	7 cut(s)	126, 135, 150, 420, 1040, 1831, 1933
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	4 cut(s)	703, 1033, 1602, 2121
Hin1I	GRCGYC	2 cut(s)	62, 924
Hin6I	GCGC	4 cut(s)	701, 1031, 1600, 2119
HinP1I	GCGC	4 cut(s)	701, 1031, 1600, 2119
HincII	GTYRAC	2 cut(s)	769, 928
HindII	GTYRAC	2 cut(s)	769, 928
HindIII	AAGCTT	1 cut(s)	1050
HinfI	GANTC	8 cut(s)	236, 669, 1119, 1384, 1717, 1952, 2024, 2156
HphI	GGTGA	8 cut(s)	47, 91, 307, 556, 1175, 1323, 1957, 1975
Hpy166II	GTNNAC	6 cut(s)	202, 224, 539, 769, 928, 1288
Hpy188I	TCNGA	5 cut(s)	1338, 1373, 1397, 1437, 1858
Hpy188III	TCNNGA	9 cut(s)	161, 170, 176, 899, 995, 1109, 1277, 1293, 1447
Hpy8I	GTNNAC	6 cut(s)	202, 224, 539, 769, 928, 1288
Hpy99I	CGWCG	3 cut(s)	67, 929, 2076
HpyCH4III	ACNGT	3 cut(s)	1163, 1651, 1735
HpyCH4IV	ACGT	3 cut(s)	62, 924, 2071
HpyCH4V	TGCA	4 cut(s)	224, 457, 1567, 1590
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 658, 802, 1037, 1214, 1223, 1490, 1700, 2146
HpyF3I	CTNAG	5 cut(s)	1035, 1467, 1826, 1857, 1869
HpySE526I	ACGT	3 cut(s)	62, 924, 2071
Hsp92I	GRCGYC	2 cut(s)	62, 924
HspAI	GCGC	4 cut(s)	701, 1031, 1600, 2119
KpnI	GGTACC	1 cut(s)	2103
Ksp22I	TGATCA	5 cut(s)	166, 1273, 1279, 1432, 1558
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	6 cut(s)	46, 265, 454, 605, 794, 2137
Lsp1109I	GCAGC	2 cut(s)	1628, 1981
LweI	GCATC	2 cut(s)	436, 2028
MaeI	CTAG	7 cut(s)	312, 435, 1005, 1755, 1923, 1929, 2088
MaeII	ACGT	3 cut(s)	62, 924, 2071
MaeIII	GTNAC	5 cut(s)	1081, 1120, 1303, 1582, 1945
MbiI	CCGCTC	1 cut(s)	317
MflI	RGATCY	3 cut(s)	592, 1021, 1487
MhlI	GDGCHC	3 cut(s)	51, 226, 1852
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	9 cut(s)	298, 681, 742, 827, 1066, 1113, 1218, 1367, 1999
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	5 cut(s)	230, 1128, 1378, 1961, 2018
MmeI	TCCRAC	1 cut(s)	653
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	6 cut(s)	360, 428, 648, 1770, 1899, 2019
MslI	CAYNNNNRTG	6 cut(s)	24, 135, 492, 1164, 1281, 1595
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	1619
MspCI	CTTAAG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	7 cut(s)	399, 422, 561, 774, 793, 820, 985
MwoI	GCNNNNNNNGC	9 cut(s)	132, 658, 802, 1037, 1214, 1223, 1490, 1700, 2146
NciI	CCSGG	5 cut(s)	952, 1690, 1833, 1893, 2104
NcoI	CCATGG	1 cut(s)	759
NlaIV	GGNNCC	5 cut(s)	412, 790, 1192, 1402, 2101
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	3 cut(s)	1081, 1120, 1945
OliI	CACNNNNGTG	1 cut(s)	1595
PaeR7I	CTCGAG	1 cut(s)	1291
PagI	TCATGA	3 cut(s)	169, 898, 1276
PasI	CCCWGGG	1 cut(s)	984
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	669, 1717, 2156
PflFI	GACNNNGTC	1 cut(s)	1951
PflMI	CCANNNNNTGG	1 cut(s)	635
PinAI	ACCGGT	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	705, 1618, 1971
PleI	GAGTC	5 cut(s)	230, 1127, 1378, 1960, 2018
PpsI	GAGTC	5 cut(s)	230, 1127, 1378, 1960, 2018
PshAI	GACNNNNGTC	1 cut(s)	1079
Psp6I	CCWGG	7 cut(s)	397, 420, 559, 772, 791, 818, 983
PspFI	CCCAGC	2 cut(s)	1313, 1540
PspGI	CCWGG	7 cut(s)	397, 420, 559, 772, 791, 818, 983
PspN4I	GGNNCC	5 cut(s)	412, 790, 1192, 1402, 2101
PspPI	GGNCC	9 cut(s)	539, 612, 626, 638, 692, 997, 1444, 1830, 1932
PstNI	CAGNNNCTG	1 cut(s)	1700
PsuI	RGATCY	3 cut(s)	592, 1021, 1487
PsyI	GACNNNGTC	1 cut(s)	1951
RseI	CAYNNNNRTG	6 cut(s)	24, 135, 492, 1164, 1281, 1595
SalI	GTCGAC	1 cut(s)	926
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	6 cut(s)	360, 428, 648, 1770, 1899, 2019
SatI	GCNGC	3 cut(s)	704, 1617, 1970
Sau96I	GGNCC	9 cut(s)	539, 612, 626, 638, 692, 997, 1444, 1830, 1932
ScaI	AGTACT	4 cut(s)	1347, 1732, 1741, 1759
SchI	GAGTC	5 cut(s)	230, 1128, 1378, 1961, 2018
SduI	GDGCHC	3 cut(s)	51, 226, 1852
SfaNI	GCATC	2 cut(s)	436, 2028
SfcI	CTRYAG	4 cut(s)	339, 501, 1647, 2150
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	1291
SinI	GGWCC	7 cut(s)	539, 612, 626, 638, 692, 997, 1444
SlaI	CTCGAG	1 cut(s)	1291
SmiMI	CAYNNNNRTG	6 cut(s)	24, 135, 492, 1164, 1281, 1595
SmlI	CTYRAG	3 cut(s)	647, 1047, 1291
SmoI	CTYRAG	3 cut(s)	647, 1047, 1291
SpeI	ACTAGT	1 cut(s)	1754
Sse9I	AATT	9 cut(s)	298, 681, 742, 827, 1066, 1113, 1218, 1367, 1999
SsiI	CCGC	7 cut(s)	317, 704, 1260, 1515, 1619, 1655, 1725
SspMI	CTAG	7 cut(s)	312, 435, 1005, 1755, 1923, 1929, 2088
StyI	CCWWGG	4 cut(s)	347, 759, 932, 1935
TaaI	ACNGT	3 cut(s)	1163, 1651, 1735
TaiI	ACGT	3 cut(s)	65, 927, 2074
TaqI	TCGA	5 cut(s)	571, 927, 1143, 1292, 2036
TaqII	GACCGA	2 cut(s)	1014, 1761
TasI	AATT	9 cut(s)	298, 681, 742, 827, 1066, 1113, 1218, 1367, 1999
TatI	WGTACW	5 cut(s)	16, 1345, 1730, 1739, 1757
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	3 cut(s)	669, 1717, 2156
Tru1I	TTAA	6 cut(s)	360, 428, 648, 1770, 1899, 2019
Tru9I	TTAA	6 cut(s)	360, 428, 648, 1770, 1899, 2019
TscAI	CASTG	4 cut(s)	379, 1090, 1471, 2128
TseFI	GTSAC	3 cut(s)	1081, 1120, 1945
TseI	GCWGC	2 cut(s)	1616, 1969
Tsp45I	GTSAC	3 cut(s)	1081, 1120, 1945
TspGWI	ACGGA	2 cut(s)	1589, 1964
TspRI	CASTG	4 cut(s)	379, 1090, 1471, 2128
Tth111I	GACNNNGTC	1 cut(s)	1951
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	647
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	7 cut(s)	539, 612, 626, 638, 692, 997, 1444
XagI	CCTNNNNNAGG	2 cut(s)	267, 456
XapI	RAATTY	2 cut(s)	298, 1999
XcmI	CCANNNNNNNNNTGG	2 cut(s)	826, 991
XhoI	CTCGAG	1 cut(s)	1291
XmiI	GTMKAC	3 cut(s)	201, 927, 1287
XspI	CTAG	7 cut(s)	312, 435, 1005, 1755, 1923, 1929, 2088
ZraI	GACGTC	2 cut(s)	63, 925
ZrmI	AGTACT	4 cut(s)	1347, 1732, 1741, 1759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.