Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

62717616 .. 62736925

Gene Structure 19310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG409700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATGCAGGTAGTGAAAGTAATACTCAGCAATGTCAAATCATTTGTGGCGTTGTTCTCAATGCACAAAGCATAAATAGTCATCTCGGATGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGGCGATATACGCAAAGAATGTTGTTGCGTCCAAGCTGGGATATGGGGCAAGTGATCAGGTGCATGACAGGGAAGATGTTACTCGCACTAATGTGCAGTCTGGAACAACAGCAGCGGATCAACATGGCAAGACGATTACCTCTTCAGTGTATGAGAAGGTTGCCGGGGCAGGGACTGCTGTAATGTCCAAGTTTCAAGGTGGGATTACTGTTAGTACTGGCAGGGACACTAGTACTGGGGCTGTTAATCAAGCCGGACAGGACAAAGGGGGGTCTGTGAAGGACTATTTCGTGAAGAAGTTGAAGCCCGGAGAAGAGGACAAAGCGCTTTCGGAGGTTATAAGTGAGACATTACACAAGCCTAAGCCGGCTGTTAAGCAAGAGACAGGGTACCCTGCTAGTGCTAGGCCCAAGGGGAAGGTGACTGAGTCGGCGGAGGTGAGGCAACGTTTGGGGAATACCGAGGGGAATGAGAATTTTGTGGTGGACAAGATTGAGGTTACTGTTGGTTCGATGCTTGATGGTACTGGTAAGAGTGATAAAGAACGTGGGCAAGGTCTCTCTAGATCTGCTGCTACCGGGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

242

Amino Acids

25.29

Weight (kDa)

6.45

Isoelectric Point (pI)

20.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP160	PF07918	36 - 61	9.3e-13	CAP160 repeat
LTI65_PGEED	PF23399	133 - 163	6.4e-17	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AciI	CCGC	2 cut(s)	251, 569
AclI	AACGTT	1 cut(s)	583
AclWI	GGATC	2 cut(s)	127, 261
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	4 cut(s)	352, 370, 527, 661
AfeI	AGCGCT	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	332, 439
AhlI	ACTAGT	1 cut(s)	365
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	3 cut(s)	476, 512, 698
AlwI	GGATC	2 cut(s)	127, 261
AlwNI	CAGNNNCTG	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	462
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	2 cut(s)	248, 707
ApoI	RAATTY	1 cut(s)	610
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	543
AsuC2I	CCSGG	3 cut(s)	301, 444, 715
AsuHPI	GGTGA	2 cut(s)	568, 586
BanI	GGYRCC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	260, 694
BccI	CCATC	1 cut(s)	650
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	3 cut(s)	301, 444, 715
BcoDI	GTCTC	3 cut(s)	476, 512, 698
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	4 cut(s)	366, 534, 540, 699
BfoI	RGCGCY	1 cut(s)	464
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	2 cut(s)	249, 708
BlsI	GCNGC	2 cut(s)	250, 709
BmcAI	AGTACT	2 cut(s)	352, 370
Bme1390I	CCNGG	3 cut(s)	301, 444, 715
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	3 cut(s)	301, 444, 715
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	80, 639
BmuI	ACTGGG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	498
BpuMI	CCSGG	3 cut(s)	301, 444, 715
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	4 cut(s)	300, 546, 597, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	358, 376, 667
Bse3DI	GCAATG	2 cut(s)	38, 126
BseDI	CCNNGG	4 cut(s)	300, 546, 597, 714
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	2 cut(s)	38, 126
BseMII	CTCAG	3 cut(s)	41, 90, 552
BseNI	ACTGG	3 cut(s)	358, 376, 667
BseXI	GCAGC	2 cut(s)	260, 694
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	525
BsiSI	CCGG	6 cut(s)	117, 300, 390, 444, 503, 714
BslFI	GGGAC	2 cut(s)	322, 374
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	3 cut(s)	476, 512, 698
BsmFI	GGGAC	2 cut(s)	322, 374
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	698
Bsp143I	GATC	4 cut(s)	119, 190, 253, 701
BspACI	CCGC	2 cut(s)	251, 569
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	3 cut(s)	40, 91, 553
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	2 cut(s)	127, 261
BspT107I	GGYRCC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	698
BsrDI	GCAATG	2 cut(s)	38, 126
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	358, 376, 667
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	4 cut(s)	300, 546, 597, 714
BssMI	GATC	4 cut(s)	119, 190, 253, 701
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	346, 640
Bst6I	CTCTTC	2 cut(s)	283, 444
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	4 cut(s)	27, 99, 498, 561
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	4 cut(s)	122, 193, 256, 704
BstMAI	GTCTC	3 cut(s)	476, 512, 698
BstMBI	GATC	4 cut(s)	119, 190, 253, 701
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 137, 146, 311
BstSCI	CCNGG	3 cut(s)	299, 442, 713
BstV1I	GCAGC	2 cut(s)	260, 694
BstX2I	RGATCY	2 cut(s)	119, 701
BstYI	RGATCY	2 cut(s)	119, 701
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	96, 288
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	311
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	543
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	4 cut(s)	351, 369, 526, 660
CviAII	CATG	2 cut(s)	200, 260
CviJI	RGCY	8 cut(s)	172, 377, 389, 442, 496, 502, 506, 544
CviKI_1	RGCY	8 cut(s)	172, 377, 389, 442, 496, 502, 506, 544
CviQI	GTAC	4 cut(s)	351, 369, 526, 660
DdeI	CTNAG	4 cut(s)	27, 99, 498, 561
DpnI	GATC	4 cut(s)	121, 192, 255, 703
DpnII	GATC	4 cut(s)	119, 190, 253, 701
Eam1104I	CTCTTC	2 cut(s)	283, 444
EarI	CTCTTC	2 cut(s)	283, 444
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	698
Eco47III	AGCGCT	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	2 cut(s)	203, 263
FaiI	YATR	7 cut(s)	74, 145, 180, 201, 261, 288, 476
FaqI	GGGAC	2 cut(s)	322, 374
FatI	CATG	2 cut(s)	199, 259
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	249, 708
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	249, 708
FspBI	CTAG	4 cut(s)	366, 534, 540, 699
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	249, 708
GsaI	CCCAGC	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	6 cut(s)	117, 300, 390, 444, 503, 714
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	203, 263
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	6 cut(s)	117, 300, 390, 444, 503, 714
HphI	GGTGA	2 cut(s)	568, 586
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	2 cut(s)	89, 469
Hpy188III	TCNNGA	3 cut(s)	237, 427, 699
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	286, 409, 547
HpyCH4III	ACNGT	2 cut(s)	346, 640
HpyCH4IV	ACGT	2 cut(s)	583, 682
HpyCH4V	TGCA	4 cut(s)	8, 65, 199, 232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 137, 146, 311
HpyF3I	CTNAG	4 cut(s)	27, 99, 498, 561
HpySE526I	ACGT	2 cut(s)	583, 682
Hsp92II	CATG	2 cut(s)	203, 263
HspAI	GCGC	1 cut(s)	461
KpnI	GGTACC	1 cut(s)	529
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	119, 190, 253, 701
Lsp1109I	GCAGC	2 cut(s)	260, 694
LweI	GCATC	2 cut(s)	80, 639
MaeI	CTAG	4 cut(s)	366, 534, 540, 699
MaeII	ACGT	2 cut(s)	583, 682
MaeIII	GTNAC	3 cut(s)	214, 556, 634
MalI	GATC	4 cut(s)	121, 192, 255, 703
MboI	GATC	4 cut(s)	119, 190, 253, 701
MboII	GAAGA	5 cut(s)	115, 221, 270, 442, 461
MflI	RGATCY	2 cut(s)	119, 701
MluCI	AATT	1 cut(s)	610
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	286, 445, 463, 565, 570, 592, 625, 712
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	2 cut(s)	381, 510
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	6 cut(s)	117, 300, 390, 444, 503, 714
MspR9I	CCNGG	3 cut(s)	301, 444, 715
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	122, 137, 146, 311
NaeI	GCCGGC	1 cut(s)	504
NciI	CCSGG	3 cut(s)	301, 444, 715
NdeII	GATC	4 cut(s)	119, 190, 253, 701
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	203, 263
NlaIV	GGNNCC	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	556
OliI	CACNNNNGTG	1 cut(s)	227
PctI	GAATGC	1 cut(s)	10
PdiI	GCCGGC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	250, 709
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PsiI	TTATAA	1 cut(s)	476
Psp1406I	AACGTT	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	119, 701
PsyI	GACNNNGTC	1 cut(s)	562
RsaI	GTAC	4 cut(s)	352, 370, 527, 661
RsaNI	GTAC	4 cut(s)	351, 369, 526, 660
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	381, 510
SatI	GCNGC	2 cut(s)	249, 708
Sau3AI	GATC	4 cut(s)	119, 190, 253, 701
Sau96I	GGNCC	1 cut(s)	543
ScaI	AGTACT	2 cut(s)	352, 370
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	301, 444, 715
SfaNI	GCATC	2 cut(s)	80, 639
SmiMI	CAYNNNNRTG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	1 cut(s)	610
SsiI	CCGC	2 cut(s)	251, 569
SspMI	CTAG	4 cut(s)	366, 534, 540, 699
StyD4I	CCNGG	3 cut(s)	299, 442, 713
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	346, 640
TaiI	ACGT	2 cut(s)	586, 685
TaqI	TCGA	1 cut(s)	647
TasI	AATT	1 cut(s)	610
TatI	WGTACW	2 cut(s)	350, 368
Tru1I	TTAA	2 cut(s)	381, 510
Tru9I	TTAA	2 cut(s)	381, 510
TscAI	CASTG	2 cut(s)	103, 288
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	248, 707
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	17, 99
TspRI	CASTG	2 cut(s)	103, 288
Tth111I	GACNNNGTC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	610
XbaI	TCTAGA	1 cut(s)	698
XspI	CTAG	4 cut(s)	366, 534, 540, 699
ZrmI	AGTACT	2 cut(s)	352, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.